Calcium in PDB 6hs5: N-Terminal Domain Including the Conserved IMPA_N Region of the Tssa Component of the Type VI Secretion System From Burkholderia Cenocepacia

The structure of N-Terminal Domain Including the Conserved IMPA_N Region of the Tssa Component of the Type VI Secretion System From Burkholderia Cenocepacia, PDB code: 6hs5 was solved by S.R.Dix, H.J.Owen, R.Sun, A.Ahmad, S.Shastri, H.L.Spiewak, D.J.Mosby, M.J.Harris, S.L.Batters, T.A.Brooker, S.B.Tzokov, S.E.Sedelnikova, P.J.Baker, P.A.Bullough, D.W.Rice, M.S.Thomas, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.21 / 1.80
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	49.670, 125.740, 45.560, 90.00, 90.00, 90.00
R / Rfree (%)	17.7 / 22.6

The binding sites of Calcium atom in the N-Terminal Domain Including the Conserved IMPA_N Region of the Tssa Component of the Type VI Secretion System From Burkholderia Cenocepacia (pdb code 6hs5). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the N-Terminal Domain Including the Conserved IMPA_N Region of the Tssa Component of the Type VI Secretion System From Burkholderia Cenocepacia, PDB code: 6hs5:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the N-Terminal Domain Including the Conserved IMPA_N Region of the Tssa Component of the Type VI Secretion System From Burkholderia Cenocepacia


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of N-Terminal Domain Including the Conserved IMPA_N Region of the Tssa Component of the Type VI Secretion System From Burkholderia Cenocepacia within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:25.0 occ:0.50 O A:HOH423 2.4 21.7 1.0 O A:HOH406 2.4 17.6 0.5 OE1 A:GLU121 2.5 36.3 1.0 O A:HOH471 2.5 21.2 1.0 CD A:GLU121 3.6 0.5 1.0 CG A:GLU121 4.2 53.4 1.0 O A:HOH421 4.3 23.4 1.0 O A:HOH427 4.3 21.4 1.0 O A:ALA227 4.5 20.0 1.0 OE2 A:GLU121 4.7 52.4 1.0 O A:SER226 4.7 18.6 1.0 CB A:GLU121 4.9 25.1 1.0 CA A:PRO228 4.9 16.6 1.0

Calcium binding site 2 out of 2 in the N-Terminal Domain Including the Conserved IMPA_N Region of the Tssa Component of the Type VI Secretion System From Burkholderia Cenocepacia


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of N-Terminal Domain Including the Conserved IMPA_N Region of the Tssa Component of the Type VI Secretion System From Burkholderia Cenocepacia within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca302 b:16.1 occ:1.00 O A:HOH415 2.3 15.7 1.0 O A:HOH474 2.4 15.8 1.0 O A:HOH481 2.4 18.2 1.0 OD1 A:ASP55 4.1 16.5 1.0 N A:GLY57 4.5 18.7 1.0 O A:HOH492 4.5 18.9 1.0 OE2 A:GLU87 4.6 21.7 1.0 CA A:GLY57 4.7 19.4 1.0 OE1 A:GLU87 4.7 26.6 1.0 CD A:GLU87 5.0 25.7 1.0

S.R.Dix, H.J.Owen, R.Sun, A.Ahmad, S.Shastri, H.L.Spiewak, D.J.Mosby, M.J.Harris, S.L.Batters, T.A.Brooker, S.B.Tzokov, S.E.Sedelnikova, P.J.Baker, P.A.Bullough, D.W.Rice, M.S.Thomas. Structural Insights Into the Function of Type VI Secretion System Tssa Subunits. Nat Commun V. 9 4765 2018.
ISSN: ESSN 2041-1723
PubMed: 30420757
DOI: 10.1038/S41467-018-07247-1