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Calcium in PDB 6ih7: Crystal Structure of A Standalone Versatile Eal Protein From Vibrio Cholerae O395 - 3',3'-Cgamp Bound Form

Enzymatic activity of Crystal Structure of A Standalone Versatile Eal Protein From Vibrio Cholerae O395 - 3',3'-Cgamp Bound Form

All present enzymatic activity of Crystal Structure of A Standalone Versatile Eal Protein From Vibrio Cholerae O395 - 3',3'-Cgamp Bound Form:
3.1.4.52;

Protein crystallography data

The structure of Crystal Structure of A Standalone Versatile Eal Protein From Vibrio Cholerae O395 - 3',3'-Cgamp Bound Form, PDB code: 6ih7 was solved by M.Yadav, K.Pal, U.Sen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.97 / 2.25
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 157.899, 42.600, 73.330, 90.00, 94.91, 90.00
R / Rfree (%) 18.1 / 24

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Standalone Versatile Eal Protein From Vibrio Cholerae O395 - 3',3'-Cgamp Bound Form (pdb code 6ih7). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of A Standalone Versatile Eal Protein From Vibrio Cholerae O395 - 3',3'-Cgamp Bound Form, PDB code: 6ih7:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 6ih7

Go back to Calcium Binding Sites List in 6ih7
Calcium binding site 1 out of 4 in the Crystal Structure of A Standalone Versatile Eal Protein From Vibrio Cholerae O395 - 3',3'-Cgamp Bound Form


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Standalone Versatile Eal Protein From Vibrio Cholerae O395 - 3',3'-Cgamp Bound Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca302

b:36.9
occ:1.00
 OD1 B:ASN95 2.0 60.9 1.0
O B:HOH402 2.2 29.2 1.0
OE2 B:GLU128 2.3 49.4 1.0
OD2 B:ASP158 2.3 39.9 1.0
OAD B:4BW301 2.4 51.3 1.0
OE2 B:GLU45 2.5 35.9 1.0
CG B:ASN95 3.1 59.7 1.0
CG B:ASP158 3.2 38.9 1.0
CD B:GLU45 3.4 38.6 1.0
CD B:GLU128 3.5 47.0 1.0
ND2 B:ASN95 3.6 56.8 1.0
PBR B:4BW301 3.7 49.8 1.0
OE1 B:GLU45 3.7 34.4 1.0
OD1 B:ASP158 3.8 38.6 1.0
OAH B:4BW301 3.9 50.6 1.0
CB B:GLU128 4.1 35.0 1.0
OE2 B:GLU215 4.2 58.3 1.0
CB B:ASP158 4.2 36.0 1.0
CA B:CA303 4.2 97.8 1.0
OE1 B:GLU128 4.3 46.6 1.0
CG B:GLU128 4.3 40.1 1.0
NZ B:LYS179 4.4 30.5 1.0
CB B:ASN95 4.4 58.1 1.0
OAV B:4BW301 4.4 50.6 1.0
CG B:GLU45 4.6 32.9 1.0
CA B:ASN95 4.9 50.8 1.0
C2' B:4BW301 5.0 60.0 1.0

Calcium binding site 2 out of 4 in 6ih7

Go back to Calcium Binding Sites List in 6ih7
Calcium binding site 2 out of 4 in the Crystal Structure of A Standalone Versatile Eal Protein From Vibrio Cholerae O395 - 3',3'-Cgamp Bound Form


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Standalone Versatile Eal Protein From Vibrio Cholerae O395 - 3',3'-Cgamp Bound Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca303

b:97.8
occ:1.00
 OD1 B:ASP159 2.4 57.2 1.0
OE1 B:GLU215 2.4 57.0 1.0
OAH B:4BW301 2.4 50.6 1.0
OD1 B:ASP158 2.5 38.6 1.0
OE2 B:GLU215 3.0 58.3 1.0
CD B:GLU215 3.0 58.5 1.0
CG B:ASP158 3.1 38.9 1.0
CG B:ASP159 3.1 56.5 1.0
OD2 B:ASP158 3.1 39.9 1.0
O B:HOH404 3.2 45.1 1.0
O B:HOH402 3.2 29.2 1.0
OD2 B:ASP159 3.4 65.7 1.0
N B:ASP159 3.8 37.0 1.0
PBR B:4BW301 3.8 49.8 1.0
OAD B:4BW301 4.1 51.3 1.0
CA B:ASP159 4.1 39.2 1.0
CB B:ASP159 4.2 45.0 1.0
CA B:CA302 4.2 36.9 1.0
CG B:GLU215 4.4 54.3 1.0
CB B:ASP158 4.4 36.0 1.0
CAN B:4BW301 4.4 46.2 1.0
C B:ASP158 4.7 33.8 1.0
OAV B:4BW301 4.7 50.6 1.0
CA B:ASP158 4.9 34.1 1.0
OD1 B:ASP181 4.9 40.3 1.0
CB B:GLU215 4.9 41.9 1.0

Calcium binding site 3 out of 4 in 6ih7

Go back to Calcium Binding Sites List in 6ih7
Calcium binding site 3 out of 4 in the Crystal Structure of A Standalone Versatile Eal Protein From Vibrio Cholerae O395 - 3',3'-Cgamp Bound Form


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A Standalone Versatile Eal Protein From Vibrio Cholerae O395 - 3',3'-Cgamp Bound Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca302

b:42.5
occ:1.00
 OE2 A:GLU128 2.3 34.2 1.0
OAD A:4BW301 2.4 44.7 1.0
OD1 A:ASN95 2.4 40.4 1.0
OD2 A:ASP158 2.4 47.5 1.0
OE2 A:GLU45 2.5 36.5 1.0
CD A:GLU45 3.2 34.1 1.0
CG A:ASP158 3.3 38.3 1.0
CG A:ASN95 3.3 54.5 1.0
CD A:GLU128 3.4 38.3 1.0
PBR A:4BW301 3.5 46.3 1.0
OE1 A:GLU45 3.6 36.0 1.0
OD1 A:ASP158 3.6 38.3 1.0
ND2 A:ASN95 3.7 50.6 1.0
OAH A:4BW301 3.9 57.8 1.0
OAV A:4BW301 4.1 51.9 1.0
OE2 A:GLU215 4.1 86.3 1.0
CA A:CA303 4.2 0.2 1.0
OE1 A:GLU128 4.2 32.2 1.0
NZ A:LYS179 4.2 38.8 1.0
CB A:GLU128 4.3 40.5 1.0
O A:HOH402 4.4 52.7 1.0
CG A:GLU128 4.4 39.6 1.0
CG A:GLU45 4.5 34.1 1.0
CB A:ASP158 4.5 34.0 1.0
CB A:ASN95 4.7 54.5 1.0
CAN A:4BW301 4.8 48.7 1.0
O3' A:4BW301 5.0 42.2 1.0
CD A:LYS179 5.0 36.5 1.0

Calcium binding site 4 out of 4 in 6ih7

Go back to Calcium Binding Sites List in 6ih7
Calcium binding site 4 out of 4 in the Crystal Structure of A Standalone Versatile Eal Protein From Vibrio Cholerae O395 - 3',3'-Cgamp Bound Form


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of A Standalone Versatile Eal Protein From Vibrio Cholerae O395 - 3',3'-Cgamp Bound Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca303

b:0.2
occ:1.00
 OE1 A:GLU215 2.3 77.6 1.0
OD1 A:ASP159 2.4 58.5 1.0
OE2 A:GLU215 2.4 86.3 1.0
OD1 A:ASP158 2.4 38.3 1.0
OAH A:4BW301 2.5 57.8 1.0
CD A:GLU215 2.7 76.1 1.0
CG A:ASP159 3.0 57.1 1.0
CG A:ASP158 3.2 38.3 1.0
OD2 A:ASP159 3.4 63.9 1.0
OD2 A:ASP158 3.5 47.5 1.0
N A:ASP159 3.6 37.4 1.0
PBR A:4BW301 3.8 46.3 1.0
O A:HOH410 4.0 61.9 1.0
CA A:ASP159 4.0 43.1 1.0
CB A:ASP159 4.1 51.0 1.0
OAD A:4BW301 4.1 44.7 1.0
CA A:CA302 4.2 42.5 1.0
CG A:GLU215 4.2 61.4 1.0
O A:HOH402 4.4 52.7 1.0
CAN A:4BW301 4.4 48.7 1.0
CB A:ASP158 4.5 34.0 1.0
C A:ASP158 4.6 34.0 1.0
OAV A:4BW301 4.7 51.9 1.0
CB A:GLU215 4.8 45.9 1.0
CA A:ASP158 4.8 32.3 1.0
OD1 A:ASP181 4.9 44.8 1.0

Reference:

M.Yadav, K.Pal, U.Sen. Crystal Structure of A Standalone Versatile Eal Protein From Vibrio Cholerae O395 - 3',3'-Cgamp Bound Form To Be Published.
Page generated: Tue Jul 16 09:24:45 2024

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