Calcium in PDB 6jdo: Crystal Structure of N-Acetyl Mannosmaine Kinase with Amp-Pnp From Pasteurella Multocida

All present enzymatic activity of Crystal Structure of N-Acetyl Mannosmaine Kinase with Amp-Pnp From Pasteurella Multocida:
2.7.1.60;

The structure of Crystal Structure of N-Acetyl Mannosmaine Kinase with Amp-Pnp From Pasteurella Multocida, PDB code: 6jdo was solved by G.Thanuja, S.Ramaswamy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.77 / 2.00
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	126.433, 126.433, 82.912, 90.00, 90.00, 120.00
R / Rfree (%)	19.2 / 22.9

The binding sites of Calcium atom in the Crystal Structure of N-Acetyl Mannosmaine Kinase with Amp-Pnp From Pasteurella Multocida (pdb code 6jdo). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of N-Acetyl Mannosmaine Kinase with Amp-Pnp From Pasteurella Multocida, PDB code: 6jdo:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of N-Acetyl Mannosmaine Kinase with Amp-Pnp From Pasteurella Multocida


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of N-Acetyl Mannosmaine Kinase with Amp-Pnp From Pasteurella Multocida within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca302 b:49.1 occ:1.00 OH A:TYR264 3.1 37.3 1.0 N B:ARG170 3.2 46.8 1.0 N B:CYS168 3.4 51.2 1.0 N B:GLY169 3.4 47.1 1.0 CB B:CYS168 3.5 52.9 1.0 CB B:ARG170 3.6 40.5 1.0 C B:CYS168 3.6 53.3 1.0 CA B:CYS168 3.7 51.1 1.0 CB B:CYS166 3.7 44.4 0.5 CD2 B:HIS156 3.9 40.4 1.0 CB B:CYS166 3.9 44.4 0.5 CA B:ARG170 4.0 43.8 1.0 CZ A:PHE263 4.1 42.0 1.0 CZ A:TYR264 4.1 36.9 1.0 CE2 A:TYR264 4.1 35.3 1.0 SG B:CYS166 4.1 46.0 0.5 C B:GLY169 4.2 44.7 1.0 CA B:GLY169 4.3 45.1 1.0 SG B:CYS173 4.4 60.8 1.0 C B:CYS166 4.4 45.4 0.5 O B:CYS168 4.4 56.6 1.0 C B:CYS166 4.4 45.5 0.5 CG A:PRO261 4.5 39.2 1.0 O B:CYS166 4.5 44.6 0.5 CE1 A:PHE263 4.5 43.0 1.0 N B:GLY167 4.5 46.8 1.0 C B:GLY167 4.6 52.3 1.0 O B:ARG170 4.7 40.9 1.0 NE2 B:HIS156 4.7 48.9 1.0 CA B:CYS166 4.7 44.4 0.5 SG B:CYS168 4.7 64.3 1.0 O B:CYS166 4.7 44.7 0.5 CA B:CYS166 4.7 44.4 0.5 C B:ARG170 4.9 40.3 1.0 CG B:HIS156 5.0 39.9 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of N-Acetyl Mannosmaine Kinase with Amp-Pnp From Pasteurella Multocida


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of N-Acetyl Mannosmaine Kinase with Amp-Pnp From Pasteurella Multocida within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca301 b:47.1 occ:1.00 OH B:TYR264 3.0 35.2 1.0 N A:ARG170 3.3 39.3 1.0 CB A:CYS168 3.3 55.9 1.0 C A:CYS168 3.4 49.3 1.0 N A:GLY169 3.5 45.4 1.0 ND1 A:HIS156 3.5 44.2 1.0 CA A:CYS168 3.6 50.0 1.0 CB A:ARG170 3.7 38.2 1.0 N A:CYS168 3.7 52.2 1.0 CB A:CYS166 3.8 44.1 1.0 O A:CYS168 3.8 45.5 1.0 CZ B:TYR264 4.0 35.6 1.0 CE2 B:TYR264 4.0 34.9 1.0 CZ B:PHE263 4.0 43.2 1.0 CA A:ARG170 4.1 40.5 1.0 CE1 A:HIS156 4.1 43.5 1.0 CE1 B:PHE263 4.1 41.2 1.0 SG A:CYS166 4.3 65.0 1.0 C A:GLY169 4.3 41.1 1.0 SG A:CYS173 4.3 55.9 1.0 CA A:GLY169 4.4 41.1 1.0 CG A:HIS156 4.7 38.3 1.0 C A:CYS166 4.8 41.8 1.0 SG A:CYS168 4.8 67.1 1.0 O A:ARG170 4.8 39.5 1.0 CG B:PRO261 4.8 38.4 1.0 CA A:CYS166 4.9 39.4 1.0 C A:GLY167 4.9 49.8 1.0 O A:CYS166 4.9 42.0 1.0 C A:ARG170 5.0 37.4 1.0

G.Thanuja, S.Ramaswamy. Crystal Structure of N-Acetyl Mannosmaine Kinase with Amp-Pnp From Pasteurella Multocida To Be Published.