Calcium in PDB 6jhj: Structure of Marine Bacterial Laminarinase Mutant-E135A

Protein crystallography data

The structure of Structure of Marine Bacterial Laminarinase Mutant-E135A, PDB code: 6jhj was solved by Y.Jian, X.Yuqun, M.Takuya, T.Masaru, L.Lijuan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.61 / 1.69
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 66.808, 94.606, 72.442, 90.00, 90.00, 90.00
R / Rfree (%) 15 / 18.5

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of Marine Bacterial Laminarinase Mutant-E135A (pdb code 6jhj). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of Marine Bacterial Laminarinase Mutant-E135A, PDB code: 6jhj:

Calcium binding site 1 out of 1 in 6jhj

Go back to Calcium Binding Sites List in 6jhj
Calcium binding site 1 out of 1 in the Structure of Marine Bacterial Laminarinase Mutant-E135A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Marine Bacterial Laminarinase Mutant-E135A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca301

b:28.3
occ:0.84
O A:GLY68 2.2 26.5 1.0
O A:ASP245 2.2 21.5 1.0
O A:GLU30 2.3 20.2 1.0
O A:HOH403 2.5 27.5 1.0
O A:HOH571 2.5 45.5 1.0
OD1 A:ASP245 2.6 28.2 1.0
C A:ASP245 3.3 20.9 1.0
C A:GLY68 3.4 27.9 1.0
C A:GLU30 3.5 20.9 1.0
CG A:ASP245 3.7 26.5 1.0
CA A:ASP245 3.9 20.0 1.0
CA A:GLY68 4.1 29.0 1.0
CA A:GLU30 4.1 19.5 1.0
O A:HOH457 4.1 54.6 1.0
CB A:GLU30 4.3 21.9 1.0
CB A:ASP245 4.4 20.8 1.0
N A:TYR246 4.4 19.8 1.0
N A:ASN69 4.4 22.1 1.0
CG2 A:THR32 4.5 35.0 1.0
OE1 A:GLU30 4.6 23.5 1.0
N A:PHE31 4.6 20.4 1.0
CB A:PHE31 4.6 22.2 1.0
CA A:ASN69 4.7 22.1 1.0
OD2 A:ASP245 4.7 26.0 1.0
CB A:TYR246 4.7 20.0 1.0
CA A:TYR246 4.8 19.8 1.0
ND2 A:ASN69 4.9 31.1 1.0
C A:PHE31 4.9 27.0 1.0
CD2 A:PHE31 4.9 23.1 1.0
CA A:PHE31 4.9 22.1 1.0
N A:THR32 5.0 26.9 1.0

Reference:

Y.Jian, X.Yuqun, M.Takuya, T.Masaru, L.Lijuan. Marine Bacterial Laminarinase To Be Published.
Page generated: Sat Dec 12 06:13:09 2020

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