Calcium in PDB 6jjj: Trimeric Structure of Kupffer Cell C-Type Lectin Receptor CLEC4F

The structure of Trimeric Structure of Kupffer Cell C-Type Lectin Receptor CLEC4F, PDB code: 6jjj was solved by Y.Wen, Z.Ouyang, J.Felix, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.56 / 2.79
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	75.150, 75.190, 61.200, 90.01, 90.04, 120.06
R / Rfree (%)	25 / 29.3

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>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Calcium atom in the Trimeric Structure of Kupffer Cell C-Type Lectin Receptor CLEC4F (pdb code 6jjj). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 12 binding sites of Calcium where determined in the Trimeric Structure of Kupffer Cell C-Type Lectin Receptor CLEC4F, PDB code: 6jjj:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 12 in the Trimeric Structure of Kupffer Cell C-Type Lectin Receptor CLEC4F


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Trimeric Structure of Kupffer Cell C-Type Lectin Receptor CLEC4F within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca601 b:0.8 occ:1.00 OE2 A:GLU478 2.1 0.3 1.0 OD1 A:ASP474 2.3 0.2 1.0 OD1 A:ASP515 2.3 0.9 1.0 OD2 A:ASP474 2.3 0.7 1.0 O A:GLU514 2.4 91.5 1.0 CG A:ASP474 2.6 0.3 1.0 OD1 A:ASN505 2.8 0.5 1.0 CD A:GLU478 2.8 0.7 1.0 HA A:ASP515 2.9 1.0 1.0 OE1 A:GLU478 2.9 0.2 1.0 C A:GLU514 3.4 90.1 1.0 CG A:ASP515 3.4 0.1 1.0 CG A:ASN505 3.6 0.7 1.0 CA A:ASP515 3.7 0.4 1.0 HH2 A:TRP481 3.9 0.7 1.0 N A:ASP515 4.0 99.9 1.0 CB A:ASP515 4.0 0.2 1.0 HA A:GLU478 4.1 0.5 1.0 CB A:ASP474 4.1 0.8 1.0 HD21 A:ASN505 4.1 0.2 1.0 CH2 A:TRP481 4.1 0.3 1.0 ND2 A:ASN505 4.2 0.6 1.0 HB2 A:ASN505 4.2 0.8 1.0 O A:GLU478 4.2 0.5 1.0 CG A:GLU478 4.2 0.6 1.0 HB3 A:ASP515 4.2 0.6 1.0 HZ2 A:TRP481 4.3 0.2 1.0 CZ2 A:TRP481 4.3 0.1 1.0 HG3 A:GLU478 4.4 0.8 1.0 H A:GLU514 4.4 0.8 1.0 HA A:ASN505 4.4 0.5 1.0 CB A:ASN505 4.4 0.4 1.0 O A:ASP474 4.4 0.4 1.0 HB2 A:ASP474 4.5 0.9 1.0 OD2 A:ASP515 4.5 0.6 1.0 H A:ASP474 4.5 0.8 1.0 HB3 A:ASP474 4.5 0.9 1.0 OD2 A:ASP525 4.5 95.4 1.0 CA A:GLU514 4.7 95.1 1.0 HB2 A:ASP525 4.8 0.7 1.0 HB2 A:GLU514 4.8 0.9 1.0 N A:GLU514 4.8 91.4 1.0 HG2 A:GLU478 4.8 0.8 1.0 CZ3 A:TRP481 4.8 0.8 1.0 C A:ASP474 4.8 0.1 1.0 H A:ASP515 4.8 0.0 1.0 CA A:GLU478 4.8 0.5 1.0 HD22 A:ASN505 4.9 0.2 1.0 HB3 A:ARG513 4.9 0.9 1.0 C A:ASP515 4.9 91.0 1.0 CA A:ASP474 4.9 0.1 1.0 HB2 A:ASP515 4.9 0.6 1.0 C A:GLU478 5.0 0.8 1.0 CA A:ASN505 5.0 0.3 1.0

Calcium binding site 2 out of 12 in the Trimeric Structure of Kupffer Cell C-Type Lectin Receptor CLEC4F


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Trimeric Structure of Kupffer Cell C-Type Lectin Receptor CLEC4F within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca602 b:0.5 occ:1.00 OE1 A:GLU514 2.2 0.7 1.0 O A:HOH701 2.3 0.8 1.0 OD1 A:ASN524 2.4 0.0 1.0 OD1 A:ASP504 2.5 0.7 1.0 O A:ASP525 2.6 0.1 1.0 OD1 A:ASP525 2.8 99.2 1.0 CD A:GLU514 2.9 0.9 1.0 OE2 A:GLU514 3.0 0.7 1.0 CG A:ASP504 3.1 0.1 1.0 OD2 A:ASP504 3.1 0.9 1.0 HE22 A:GLN502 3.2 0.8 1.0 HD21 A:ASN524 3.2 0.6 1.0 CG A:ASN524 3.4 96.9 1.0 OE1 A:GLN502 3.4 0.8 1.0 NE2 A:GLN502 3.6 0.6 1.0 ND2 A:ASN524 3.7 89.5 1.0 CD A:GLN502 3.7 0.1 1.0 C A:ASP525 3.8 0.7 1.0 CG A:ASP525 3.9 0.8 1.0 H A:ASP504 3.9 0.1 1.0 H A:TRP506 3.9 0.1 1.0 HB2 A:TRP506 4.0 0.2 1.0 H A:ASP525 4.1 0.6 1.0 HE21 A:GLN502 4.1 0.8 1.0 H A:ASN505 4.3 0.8 1.0 N A:ASP525 4.3 0.4 1.0 HA A:MET526 4.3 0.8 1.0 CG A:GLU514 4.4 0.4 1.0 HB3 A:TRP506 4.4 0.2 1.0 CA A:ASP525 4.5 0.1 1.0 HD22 A:ASN524 4.5 0.6 1.0 HB3 A:GLU514 4.6 0.9 1.0 CB A:ASP504 4.6 0.9 1.0 OD2 A:ASP525 4.6 95.4 1.0 CB A:TRP506 4.6 0.8 1.0 N A:ASP504 4.7 0.6 1.0 HB2 A:GLU514 4.7 0.9 1.0 N A:TRP506 4.8 0.5 1.0 N A:MET526 4.8 94.2 1.0 CB A:ASN524 4.8 0.3 1.0 N A:ASN505 4.8 0.6 1.0 CB A:ASP525 4.8 0.3 1.0 CB A:GLU514 4.8 0.4 1.0 C A:ASN524 4.8 0.9 1.0 HG3 A:GLU514 4.9 0.1 1.0 CG A:GLN502 4.9 0.3 1.0 HG2 A:GLU514 4.9 0.1 1.0 HB3 A:ASP504 4.9 0.4 1.0 HG3 A:GLN502 4.9 0.3 1.0 HA A:ASN524 4.9 0.5 1.0 HG2 A:GLN502 5.0 0.3 1.0 CA A:MET526 5.0 94.8 1.0

Calcium binding site 3 out of 12 in the Trimeric Structure of Kupffer Cell C-Type Lectin Receptor CLEC4F


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Trimeric Structure of Kupffer Cell C-Type Lectin Receptor CLEC4F within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca601 b:0.2 occ:1.00 OE1 B:GLU514 2.1 0.3 1.0 OD1 B:ASN524 2.4 99.8 1.0 OD1 B:ASP504 2.5 0.0 1.0 O B:ASP525 2.5 0.3 1.0 O B:HOH701 2.6 0.1 1.0 CD B:GLU514 2.8 0.3 1.0 OE2 B:GLU514 2.8 0.5 1.0 OD1 B:ASP525 2.8 99.1 1.0 HD21 B:ASN524 3.1 0.8 1.0 CG B:ASP504 3.2 0.7 1.0 OD2 B:ASP504 3.3 0.9 1.0 HE22 B:GLN502 3.3 0.7 1.0 CG B:ASN524 3.3 96.0 1.0 OE1 B:GLN502 3.5 0.1 1.0 ND2 B:ASN524 3.6 97.2 1.0 NE2 B:GLN502 3.6 0.3 1.0 C B:ASP525 3.6 92.1 1.0 CD B:GLN502 3.7 0.4 1.0 CG B:ASP525 3.9 96.3 1.0 H B:TRP506 3.9 0.1 1.0 H B:ASP504 3.9 0.3 1.0 HB2 B:TRP506 4.0 0.2 1.0 HA B:MET526 4.1 99.7 1.0 H B:ASP525 4.1 0.2 1.0 HE21 B:GLN502 4.2 0.7 1.0 CG B:GLU514 4.2 0.4 1.0 N B:ASP525 4.2 85.1 1.0 H B:ASN505 4.3 0.2 1.0 HB3 B:TRP506 4.3 0.2 1.0 HB3 B:GLU514 4.4 0.3 1.0 CA B:ASP525 4.4 89.5 1.0 HD22 B:ASN524 4.4 0.8 1.0 OD2 B:ASP525 4.6 95.2 1.0 HB2 B:GLU514 4.6 0.3 1.0 CB B:TRP506 4.6 0.4 1.0 N B:MET526 4.6 79.4 1.0 CB B:ASP504 4.6 0.7 1.0 CB B:GLU514 4.7 0.3 1.0 HG2 B:GLU514 4.7 0.9 1.0 N B:ASP504 4.7 0.5 1.0 HG3 B:GLU514 4.7 0.9 1.0 N B:TRP506 4.7 0.5 1.0 CB B:ASN524 4.7 93.0 1.0 CB B:ASP525 4.8 94.8 1.0 C B:ASN524 4.8 92.5 1.0 N B:ASN505 4.8 0.1 1.0 CA B:MET526 4.8 83.0 1.0 CG B:GLN502 4.9 0.5 1.0 HG3 B:GLN502 4.9 0.5 1.0 HE2 B:HIS508 4.9 99.4 1.0 HG2 B:GLN502 5.0 0.5 1.0 HA B:ASN524 5.0 0.7 1.0 HB3 B:ASP504 5.0 0.9 1.0

Calcium binding site 4 out of 12 in the Trimeric Structure of Kupffer Cell C-Type Lectin Receptor CLEC4F


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Trimeric Structure of Kupffer Cell C-Type Lectin Receptor CLEC4F within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca602 b:0.6 occ:1.00 OE2 B:GLU478 2.2 0.7 1.0 O B:GLU514 2.3 92.8 1.0 OD2 B:ASP474 2.3 0.3 1.0 OD1 B:ASP474 2.5 0.1 1.0 OD1 B:ASP515 2.6 0.6 1.0 CG B:ASP474 2.7 0.1 1.0 HA B:ASP515 2.9 0.3 1.0 CD B:GLU478 3.1 0.9 1.0 OE1 B:GLU478 3.4 0.9 1.0 C B:GLU514 3.4 91.2 1.0 HH2 B:TRP481 3.6 0.0 1.0 OD1 B:ASN505 3.7 0.3 1.0 CG B:ASN505 3.7 0.5 1.0 CA B:ASP515 3.8 0.2 1.0 CG B:ASP515 3.8 0.6 1.0 CH2 B:TRP481 3.8 0.6 1.0 ND2 B:ASN505 3.8 0.7 1.0 HD21 B:ASN505 3.8 0.1 1.0 N B:ASP515 4.0 0.6 1.0 HZ2 B:TRP481 4.0 0.7 1.0 CZ2 B:TRP481 4.1 0.7 1.0 HB2 B:ASN505 4.1 0.9 1.0 HA B:ASN505 4.1 0.0 1.0 OD2 B:ASP525 4.2 95.2 1.0 HD22 B:ASN505 4.3 0.1 1.0 CB B:ASP474 4.3 0.9 1.0 CB B:ASP515 4.3 1.0 1.0 O B:GLU478 4.3 0.9 1.0 H B:GLU514 4.4 0.6 1.0 CG B:GLU478 4.4 0.4 1.0 CB B:ASN505 4.4 0.5 1.0 HG3 B:GLU478 4.4 0.2 1.0 HA B:GLU478 4.5 0.7 1.0 HB2 B:ASP525 4.5 0.9 1.0 HB3 B:ASP515 4.5 0.9 1.0 HB2 B:GLU514 4.5 0.3 1.0 CZ3 B:TRP481 4.5 0.7 1.0 HB3 B:ASP474 4.6 0.8 1.0 CA B:GLU514 4.6 0.3 1.0 H B:ASP474 4.7 0.1 1.0 HB2 B:ASP474 4.7 0.8 1.0 HZ3 B:TRP481 4.8 0.7 1.0 CA B:ASN505 4.8 0.1 1.0 OD2 B:ASP515 4.8 0.0 1.0 N B:GLU514 4.8 1.0 1.0 O B:ASP474 4.8 0.1 1.0 H B:ASP515 4.9 0.7 1.0 HB3 B:ARG513 4.9 0.7 1.0 C B:ASP515 4.9 98.6 1.0 HG2 B:GLU478 4.9 0.2 1.0 CE2 B:TRP481 5.0 0.7 1.0

Calcium binding site 5 out of 12 in the Trimeric Structure of Kupffer Cell C-Type Lectin Receptor CLEC4F


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Trimeric Structure of Kupffer Cell C-Type Lectin Receptor CLEC4F within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca601 b:98.9 occ:1.00 OE1 C:GLU514 2.2 87.2 1.0 OD1 C:ASP504 2.4 0.9 1.0 OD1 C:ASN524 2.5 0.1 1.0 O C:HOH701 2.6 0.0 1.0 O C:ASP525 2.8 97.3 1.0 OE2 C:GLU514 2.8 85.2 1.0 CD C:GLU514 2.8 88.9 1.0 OD2 C:ASP504 3.0 0.1 1.0 CG C:ASP504 3.0 0.7 1.0 OD1 C:ASP525 3.0 0.5 1.0 HD21 C:ASN524 3.1 0.2 1.0 HE22 C:GLN502 3.3 1.0 1.0 CG C:ASN524 3.4 0.4 1.0 OE1 C:GLN502 3.5 0.7 1.0 ND2 C:ASN524 3.6 0.3 1.0 NE2 C:GLN502 3.6 0.6 1.0 CD C:GLN502 3.7 0.0 1.0 H C:ASP504 3.9 0.7 1.0 H C:TRP506 3.9 0.6 1.0 C C:ASP525 4.0 88.6 1.0 HB2 C:TRP506 4.0 0.8 1.0 CG C:ASP525 4.1 95.1 1.0 H C:ASN505 4.2 0.2 1.0 HE21 C:GLN502 4.2 1.0 1.0 CG C:GLU514 4.3 95.9 1.0 HA C:MET526 4.3 0.6 1.0 H C:ASP525 4.4 0.7 1.0 HB3 C:TRP506 4.4 0.8 1.0 HD22 C:ASN524 4.4 0.2 1.0 CB C:ASP504 4.5 0.3 1.0 N C:ASP525 4.5 88.0 1.0 HB3 C:GLU514 4.5 0.0 1.0 N C:ASP504 4.7 0.7 1.0 CB C:TRP506 4.7 0.5 1.0 HB2 C:GLU514 4.7 0.0 1.0 N C:ASN505 4.7 0.4 1.0 N C:TRP506 4.7 0.6 1.0 HG3 C:GLU514 4.8 0.2 1.0 CA C:ASP525 4.8 81.4 1.0 HG2 C:GLU514 4.8 0.2 1.0 CB C:GLU514 4.8 0.8 1.0 OD2 C:ASP525 4.8 95.2 1.0 HB3 C:ASP504 4.8 0.7 1.0 CB C:ASN524 4.8 0.8 1.0 CG C:GLN502 4.9 0.2 1.0 HG3 C:GLN502 4.9 0.7 1.0 N C:MET526 4.9 84.2 1.0 HE2 C:HIS508 5.0 0.7 1.0 HG2 C:GLN502 5.0 0.7 1.0

Calcium binding site 6 out of 12 in the Trimeric Structure of Kupffer Cell C-Type Lectin Receptor CLEC4F


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Trimeric Structure of Kupffer Cell C-Type Lectin Receptor CLEC4F within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca602 b:0.5 occ:1.00 HD21 C:ASN505 2.1 0.9 1.0 OD1 C:ASP515 2.2 0.8 1.0 OE2 C:GLU478 2.2 0.3 1.0 OD2 C:ASP474 2.2 0.5 1.0 O C:GLU514 2.2 95.1 1.0 HD22 C:ASN505 2.3 0.9 1.0 OD1 C:ASP474 2.3 0.1 1.0 ND2 C:ASN505 2.4 0.5 1.0 CG C:ASP474 2.6 0.1 1.0 HA C:ASP515 2.8 0.5 1.0 CD C:GLU478 3.0 0.9 1.0 OE1 C:GLU478 3.1 0.6 1.0 C C:GLU514 3.3 95.2 1.0 CG C:ASP515 3.4 0.6 1.0 CA C:ASP515 3.5 95.3 1.0 CG C:ASN505 3.6 0.1 1.0 N C:ASP515 3.8 91.2 1.0 CB C:ASP515 3.9 0.8 1.0 HH2 C:TRP481 4.0 1.0 1.0 H C:GLU514 4.1 0.3 1.0 CB C:ASP474 4.1 0.6 1.0 HB3 C:ASP515 4.2 0.9 1.0 O C:GLU478 4.3 1.0 1.0 HA C:GLU478 4.3 0.7 1.0 CG C:GLU478 4.3 0.2 1.0 HB2 C:ASN505 4.3 0.5 1.0 OD1 C:ASN505 4.4 92.1 1.0 CH2 C:TRP481 4.4 0.9 1.0 OD2 C:ASP515 4.4 0.2 1.0 HG3 C:GLU478 4.4 0.9 1.0 HB3 C:ASP474 4.4 0.8 1.0 HB3 C:ARG513 4.4 0.2 1.0 CA C:GLU514 4.4 0.7 1.0 HA C:ASN505 4.5 0.2 1.0 OD2 C:ASP525 4.5 95.2 1.0 HB2 C:ASP474 4.5 0.8 1.0 N C:GLU514 4.5 0.3 1.0 H C:ASP474 4.5 0.0 1.0 HZ2 C:TRP481 4.5 0.5 1.0 CB C:ASN505 4.6 0.1 1.0 HB2 C:GLU514 4.6 0.0 1.0 CZ2 C:TRP481 4.6 0.5 1.0 H C:ASP515 4.7 0.6 1.0 O C:ASP474 4.7 0.8 1.0 HB2 C:ASP525 4.7 0.8 1.0 HB2 C:ASP515 4.8 0.9 1.0 C C:ASP515 4.8 88.0 1.0 HG2 C:GLU478 4.9 0.9 1.0 CA C:ASP474 5.0 0.8 1.0

Calcium binding site 7 out of 12 in the Trimeric Structure of Kupffer Cell C-Type Lectin Receptor CLEC4F


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Trimeric Structure of Kupffer Cell C-Type Lectin Receptor CLEC4F within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca601 b:0.8 occ:1.00 OE1 D:GLU514 2.3 0.2 1.0 O D:HOH701 2.4 98.8 1.0 OD1 D:ASP504 2.4 0.2 1.0 OD1 D:ASN524 2.5 95.9 1.0 O D:ASP525 2.7 0.5 1.0 OE2 D:GLU514 2.7 99.7 1.0 CD D:GLU514 2.8 98.2 1.0 OD2 D:ASP504 3.0 0.1 1.0 CG D:ASP504 3.1 0.3 1.0 OD1 D:ASP525 3.1 96.3 1.0 HD21 D:ASN524 3.1 0.2 1.0 CG D:ASN524 3.4 92.0 1.0 ND2 D:ASN524 3.6 90.9 1.0 HB2 D:TRP506 3.8 0.8 1.0 H D:TRP506 3.8 0.1 1.0 C D:ASP525 3.9 0.8 1.0 OE1 D:GLN502 3.9 0.8 1.0 H D:ASP504 4.0 0.2 1.0 CG D:ASP525 4.1 93.8 1.0 HB3 D:TRP506 4.2 0.8 1.0 HA D:MET526 4.2 99.8 1.0 CD D:GLN502 4.3 0.0 1.0 CG D:GLU514 4.3 93.8 1.0 H D:ASP525 4.3 0.5 1.0 H D:ASN505 4.3 0.9 1.0 HG3 D:GLN502 4.4 0.3 1.0 CB D:TRP506 4.4 0.2 1.0 HD22 D:ASN524 4.4 0.2 1.0 N D:ASP525 4.5 91.2 1.0 CB D:ASP504 4.5 0.3 1.0 HB3 D:GLU514 4.6 0.0 1.0 CA D:ASP525 4.7 94.0 1.0 N D:TRP506 4.7 0.1 1.0 HG2 D:GLU514 4.7 0.7 1.0 N D:ASP504 4.8 0.4 1.0 HG3 D:GLU514 4.8 0.7 1.0 NE2 D:GLN502 4.8 0.0 1.0 HB2 D:GLU514 4.8 0.0 1.0 CG D:GLN502 4.8 0.3 1.0 N D:MET526 4.8 82.1 1.0 CB D:ASN524 4.8 87.0 1.0 OD2 D:ASP525 4.8 94.4 1.0 N D:ASN505 4.9 0.5 1.0 CB D:GLU514 4.9 92.4 1.0 HE22 D:GLN502 4.9 0.3 1.0 HB3 D:ASP504 4.9 0.7 1.0 HE2 D:HIS508 4.9 0.7 1.0 C D:ASN524 5.0 80.7 1.0 HG2 D:GLN502 5.0 0.3 1.0 CA D:MET526 5.0 83.0 1.0

Calcium binding site 8 out of 12 in the Trimeric Structure of Kupffer Cell C-Type Lectin Receptor CLEC4F


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Trimeric Structure of Kupffer Cell C-Type Lectin Receptor CLEC4F within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca602 b:0.9 occ:1.00 OE2 D:GLU478 2.1 0.2 1.0 OD1 D:ASP515 2.2 0.1 1.0 O D:GLU514 2.2 85.5 1.0 OD1 D:ASP474 2.3 0.0 1.0 OD2 D:ASP474 2.4 0.8 1.0 OE1 D:GLU478 2.6 0.9 1.0 CD D:GLU478 2.7 0.4 1.0 CG D:ASP474 2.7 0.4 1.0 HA D:ASP515 2.7 0.5 1.0 C D:GLU514 3.2 88.3 1.0 CG D:ASP515 3.3 0.9 1.0 CA D:ASP515 3.5 0.4 1.0 OD1 D:ASN505 3.7 0.5 1.0 N D:ASP515 3.8 92.4 1.0 CB D:ASP515 3.9 0.8 1.0 CG D:ASN505 3.9 0.7 1.0 HD21 D:ASN505 3.9 1.0 1.0 HA D:GLU478 3.9 0.7 1.0 ND2 D:ASN505 4.0 0.6 1.0 HH2 D:TRP481 4.1 0.8 1.0 CG D:GLU478 4.1 0.4 1.0 HB3 D:ASP515 4.1 0.6 1.0 CB D:ASP474 4.2 0.9 1.0 H D:GLU514 4.2 0.1 1.0 O D:GLU478 4.2 0.9 1.0 HG3 D:GLU478 4.3 0.2 1.0 CH2 D:TRP481 4.4 0.9 1.0 OD2 D:ASP515 4.4 0.7 1.0 O D:ASP474 4.4 1.0 1.0 HA D:ASN505 4.5 0.3 1.0 CA D:GLU514 4.5 90.8 1.0 HB2 D:ASP474 4.5 0.9 1.0 HD22 D:ASN505 4.5 1.0 1.0 H D:ASP474 4.5 0.3 1.0 HB2 D:ASN505 4.6 0.1 1.0 HZ2 D:TRP481 4.6 0.0 1.0 OD2 D:ASP525 4.6 94.4 1.0 N D:GLU514 4.6 92.5 1.0 H D:ASP515 4.6 0.9 1.0 HB3 D:ARG513 4.6 0.0 1.0 HB3 D:ASP474 4.6 0.9 1.0 HB2 D:GLU514 4.6 0.0 1.0 HG2 D:GLU478 4.6 0.2 1.0 CZ2 D:TRP481 4.7 0.3 1.0 CA D:GLU478 4.7 0.9 1.0 HB2 D:ASP525 4.7 1.0 1.0 C D:ASP515 4.7 90.7 1.0 CB D:ASN505 4.7 0.3 1.0 HB2 D:ASP515 4.8 0.6 1.0 C D:ASP474 4.8 0.2 1.0 CB D:GLU478 4.9 0.7 1.0 CA D:ASP474 4.9 0.8 1.0 C D:GLU478 5.0 0.4 1.0

Calcium binding site 9 out of 12 in the Trimeric Structure of Kupffer Cell C-Type Lectin Receptor CLEC4F


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Trimeric Structure of Kupffer Cell C-Type Lectin Receptor CLEC4F within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca601 b:0.8 occ:1.00 OE1 E:GLU514 2.3 0.5 1.0 O E:HOH701 2.4 0.8 1.0 OD1 E:ASN524 2.4 90.3 1.0 O E:ASP525 2.5 91.8 1.0 OE2 E:GLU514 2.7 0.8 1.0 OD1 E:ASP504 2.7 0.2 1.0 CD E:GLU514 2.8 0.2 1.0 OD1 E:ASP525 2.9 98.7 1.0 HE22 E:GLN502 3.0 0.7 1.0 HD21 E:ASN524 3.0 93.5 1.0 CG E:ASN524 3.3 83.8 1.0 NE2 E:GLN502 3.3 0.8 1.0 OD2 E:ASP504 3.4 0.9 1.0 CG E:ASP504 3.4 0.2 1.0 ND2 E:ASN524 3.5 77.8 1.0 OE1 E:GLN502 3.6 0.2 1.0 CD E:GLN502 3.6 0.5 1.0 C E:ASP525 3.7 81.4 1.0 HE21 E:GLN502 3.8 0.7 1.0 CG E:ASP525 4.0 94.3 1.0 HA E:MET526 4.1 91.8 1.0 H E:ASP504 4.1 0.2 1.0 H E:TRP506 4.2 0.5 1.0 H E:ASP525 4.2 99.8 1.0 HB2 E:TRP506 4.2 0.9 1.0 CG E:GLU514 4.3 0.3 1.0 N E:ASP525 4.3 83.1 1.0 HD22 E:ASN524 4.3 93.5 1.0 CA E:ASP525 4.5 85.0 1.0 HB3 E:GLU514 4.5 0.6 1.0 HB3 E:TRP506 4.5 0.9 1.0 H E:ASN505 4.5 0.5 1.0 N E:MET526 4.7 74.8 1.0 CB E:ASN524 4.7 83.2 1.0 HG2 E:GLN502 4.7 0.1 1.0 CG E:GLN502 4.7 0.8 1.0 HG2 E:GLU514 4.7 0.7 1.0 OD2 E:ASP525 4.7 95.1 1.0 HB2 E:GLU514 4.7 0.6 1.0 C E:ASN524 4.8 88.2 1.0 HG3 E:GLU514 4.8 0.7 1.0 CB E:GLU514 4.8 0.1 1.0 HG3 E:GLN502 4.8 0.1 1.0 CB E:TRP506 4.8 0.7 1.0 CA E:MET526 4.8 76.4 1.0 CB E:ASP504 4.9 0.1 1.0 CB E:ASP525 4.9 87.9 1.0 N E:ASP504 4.9 0.6 1.0 HA E:ASN524 4.9 0.6 1.0 HE2 E:HIS508 4.9 0.8 1.0

Calcium binding site 10 out of 12 in the Trimeric Structure of Kupffer Cell C-Type Lectin Receptor CLEC4F


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Trimeric Structure of Kupffer Cell C-Type Lectin Receptor CLEC4F within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca602 b:0.7 occ:1.00 OE2 E:GLU478 2.1 0.9 1.0 OD1 E:ASP515 2.3 0.0 1.0 O E:GLU514 2.4 87.9 1.0 OD2 E:ASP474 2.4 0.4 1.0 OD1 E:ASP474 2.4 0.9 1.0 OE1 E:GLU478 2.7 0.7 1.0 CD E:GLU478 2.7 0.8 1.0 CG E:ASP474 2.7 0.3 1.0 OD1 E:ASN505 2.8 0.2 1.0 HA E:ASP515 2.8 0.2 1.0 C E:GLU514 3.4 91.9 1.0 CG E:ASP515 3.4 0.6 1.0 CA E:ASP515 3.6 98.4 1.0 CG E:ASN505 3.7 0.1 1.0 N E:ASP515 4.0 0.9 1.0 HH2 E:TRP481 4.0 0.7 1.0 CB E:ASP515 4.0 1.0 1.0 HA E:GLU478 4.1 0.4 1.0 CG E:GLU478 4.2 0.5 1.0 CH2 E:TRP481 4.2 0.7 1.0 HB3 E:ASP515 4.2 0.5 1.0 CB E:ASP474 4.3 0.0 1.0 HB2 E:ASN505 4.3 0.4 1.0 O E:GLU478 4.3 0.7 1.0 H E:GLU514 4.3 0.4 1.0 HZ2 E:TRP481 4.4 0.4 1.0 HD21 E:ASN505 4.4 0.5 1.0 ND2 E:ASN505 4.4 1.0 1.0 HG3 E:GLU478 4.4 0.7 1.0 HA E:ASN505 4.4 0.7 1.0 CZ2 E:TRP481 4.4 0.9 1.0 OD2 E:ASP515 4.5 0.6 1.0 CB E:ASN505 4.5 0.1 1.0 O E:ASP474 4.6 0.1 1.0 HB2 E:ASP474 4.6 0.5 1.0 OD2 E:ASP525 4.6 95.1 1.0 CA E:GLU514 4.6 95.7 1.0 H E:ASP474 4.7 0.6 1.0 HG2 E:GLU478 4.7 0.7 1.0 HB3 E:ASP474 4.7 0.5 1.0 HB2 E:GLU514 4.7 0.6 1.0 N E:GLU514 4.8 99.4 1.0 HB2 E:ASP525 4.8 0.6 1.0 H E:ASP515 4.8 0.0 1.0 HB3 E:ARG513 4.8 0.1 1.0 CA E:GLU478 4.8 0.6 1.0 C E:ASP515 4.9 0.2 1.0 HB2 E:ASP515 4.9 0.5 1.0 CZ3 E:TRP481 4.9 0.9 1.0 C E:ASP474 4.9 0.6 1.0

Z.Ouyang, J.Felix, J.Zhou, Y.Pei, B.Ma, P.M.Hwang, M.J.Lemieux, I.Gutsche, F.Zheng, Y.Wen. Trimeric Structure of the Mouse Kupffer Cell C-Type Lectin Receptor CLEC4F. Febs Lett. 2019.
ISSN: ISSN 0014-5793
PubMed: 31369681
DOI: 10.1002/1873-3468.13565