Calcium in PDB 6jow: Exo-Beta-D-Glucosaminidase From Pyrococcus Furiosus

The structure of Exo-Beta-D-Glucosaminidase From Pyrococcus Furiosus, PDB code: 6jow was solved by S.Mine, M.Watanabe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.75
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	85.130, 149.597, 147.315, 90.00, 102.07, 90.00
R / Rfree (%)	14.8 / 22

The binding sites of Calcium atom in the Exo-Beta-D-Glucosaminidase From Pyrococcus Furiosus (pdb code 6jow). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Exo-Beta-D-Glucosaminidase From Pyrococcus Furiosus, PDB code: 6jow:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Exo-Beta-D-Glucosaminidase From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Exo-Beta-D-Glucosaminidase From Pyrococcus Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca801 b:38.6 occ:1.00 O B:HOH1167 2.1 35.0 1.0 O A:HOH1049 2.2 25.6 1.0 O B:HOH1054 2.2 27.9 1.0 O B:HOH1123 2.3 28.8 1.0 O A:HOH998 2.3 23.8 1.0 O A:HOH974 2.3 42.2 1.0 OE1 A:GLU351 3.8 29.7 1.0 OE1 B:GLU351 3.8 25.9 1.0 OE2 A:GLU354 3.9 28.8 1.0 OE2 B:GLU354 3.9 29.1 1.0 OD2 B:ASP353 4.1 23.4 1.0 OD2 A:ASP353 4.2 30.9 1.0 NH1 B:ARG690 4.3 24.5 1.0 OD1 B:ASP353 4.4 26.3 1.0 NH1 A:ARG690 4.4 28.0 1.0 OD1 A:ASP353 4.4 26.8 1.0 OD2 B:ASP669 4.4 29.4 1.0 OD2 A:ASP669 4.4 31.6 1.0 CD B:GLU351 4.6 27.4 1.0 CD A:GLU351 4.7 28.6 1.0 CG B:ASP353 4.7 26.4 1.0 CG A:ASP353 4.7 26.7 1.0 CD A:GLU354 5.0 24.7 1.0 CD B:GLU354 5.0 24.4 1.0

Calcium binding site 2 out of 2 in the Exo-Beta-D-Glucosaminidase From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Exo-Beta-D-Glucosaminidase From Pyrococcus Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca802 b:47.2 occ:1.00 O D:HOH1119 2.1 25.4 1.0 O D:HOH1134 2.1 24.5 1.0 O C:HOH913 2.2 23.4 1.0 O C:HOH1096 2.2 23.2 1.0 O D:HOH1157 2.2 28.5 1.0 O C:HOH948 2.2 22.6 1.0 OE1 D:GLU351 3.8 24.8 1.0 OE2 C:GLU354 3.9 24.4 1.0 OE2 D:GLU354 4.0 24.5 1.0 OE1 C:GLU351 4.0 25.3 1.0 OD2 D:ASP353 4.0 27.1 1.0 OD2 C:ASP669 4.1 28.3 1.0 OD2 C:ASP353 4.1 24.2 1.0 NH1 D:ARG690 4.2 27.7 1.0 OD1 D:ASP353 4.3 25.5 1.0 NH1 C:ARG690 4.3 22.3 1.0 OD2 D:ASP669 4.3 28.3 1.0 OD1 C:ASP353 4.4 30.3 1.0 CG D:ASP353 4.6 24.2 1.0 CD D:GLU351 4.6 24.2 1.0 CG C:ASP353 4.6 25.1 1.0 CD C:GLU351 4.8 31.5 1.0 CD D:GLU354 5.0 25.8 1.0 CB C:ASP669 5.0 20.8 1.0 CD C:GLU354 5.0 29.6 1.0

S.Mine, M.Watanabe. Exo-Beta-D-Glucosaminidase From Pyrococcus Furiosus To Be Published.