Calcium in PDB 6jp5: Rabbit CAV1.1-Nifedipine Complex

The binding sites of Calcium atom in the Rabbit CAV1.1-Nifedipine Complex (pdb code 6jp5). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Rabbit CAV1.1-Nifedipine Complex, PDB code: 6jp5:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Rabbit CAV1.1-Nifedipine Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Rabbit CAV1.1-Nifedipine Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1902 b:16.7 occ:1.00 OE2 A:GLU1014 2.4 0.9 1.0 OE2 A:GLU292 2.4 1.9 1.0 OE1 A:GLU1014 2.5 0.9 1.0 CD A:GLU1014 2.8 0.9 1.0 OE1 A:GLU292 3.0 1.9 1.0 CD A:GLU292 3.1 1.9 1.0 OE1 A:GLU614 3.4 1.0 1.0 O A:GLU1323 3.7 2.1 1.0 O A:GLY1322 3.7 2.4 1.0 CA A:CA1903 3.8 18.0 1.0 CD A:GLU614 4.1 1.0 1.0 OE2 A:GLU614 4.2 1.0 1.0 CG A:GLU1014 4.3 0.9 1.0 CG A:GLU292 4.5 1.9 1.0 C A:GLU1323 4.5 2.1 1.0 CA A:GLU1323 4.5 2.1 1.0 C A:GLY1322 4.8 2.4 1.0 N A:ASP615 4.8 2.9 1.0 OE2 A:GLU1323 4.9 2.1 1.0

Calcium binding site 2 out of 3 in the Rabbit CAV1.1-Nifedipine Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Rabbit CAV1.1-Nifedipine Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1903 b:18.0 occ:1.00 OE1 A:GLU292 3.0 1.9 1.0 OE2 A:GLU1014 3.2 0.9 1.0 CA A:CA1902 3.8 16.7 1.0 CD A:GLU292 4.2 1.9 1.0 CD A:GLU1014 4.4 0.9 1.0 O A:GLY1322 4.5 2.4 1.0 OE1 A:GLU614 4.6 1.0 1.0 O A:MET291 4.7 3.8 1.0 OE2 A:GLU292 4.7 1.9 1.0 C A:GLY613 4.7 1.8 1.0 O A:GLY613 4.8 1.8 1.0 O A:THR612 4.8 1.4 1.0 N A:GLU614 4.8 1.0 1.0 CB A:PHE1013 4.9 0.8 1.0 O A:THR1321 4.9 3.3 1.0 O A:PHE1013 4.9 0.8 1.0

Calcium binding site 3 out of 3 in the Rabbit CAV1.1-Nifedipine Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Rabbit CAV1.1-Nifedipine Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1914 b:10.7 occ:1.00 OG1 F:THR333 2.3 46.4 1.0 OG F:SER265 2.6 42.0 1.0 OG F:SER263 2.8 43.0 1.0 OD2 A:ASP78 3.0 5.8 1.0 CB F:THR333 3.5 46.4 1.0 CB F:SER263 3.6 43.0 1.0 CG2 F:THR333 3.9 46.4 1.0 CB F:SER265 3.9 42.0 1.0 CG A:ASP78 4.1 5.8 1.0 OD2 F:ASP261 4.2 38.4 1.0 OD1 F:ASP365 4.3 46.9 1.0 OD1 A:ASP78 4.4 5.8 1.0 O F:GLY366 4.5 51.8 1.0 CA F:THR333 4.7 46.4 1.0 N F:SER265 4.8 42.0 1.0 OD1 F:ASP261 4.8 38.4 1.0 N F:THR333 4.9 46.4 1.0 CA F:SER265 4.9 42.0 1.0 CG F:ASP261 4.9 38.4 1.0 CA F:SER263 5.0 43.0 1.0

Y.Zhao, G.Huang, J.Wu, Q.Wu, S.Gao, Z.Yan, J.Lei, N.Yan. Molecular Basis For Ligand Modulation of A Mammalian Voltage-Gated CA2+Channel. Cell V. 177 1495 2019.
ISSN: ISSN 1097-4172
PubMed: 31150622
DOI: 10.1016/J.CELL.2019.04.043