Calcium in PDB 6k83: Structure of RGLG1 Mutant-D207G

All present enzymatic activity of Structure of RGLG1 Mutant-D207G:
2.3.2.27;

The structure of Structure of RGLG1 Mutant-D207G, PDB code: 6k83 was solved by Q.Wang, Y.Wu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.51 / 2.39
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	141.120, 42.180, 243.440, 90.00, 91.08, 90.00
R / Rfree (%)	20.5 / 26.8

The structure of Structure of RGLG1 Mutant-D207G also contains other interesting chemical elements:

Magnesium

(Mg)

8 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Calcium atom in the Structure of RGLG1 Mutant-D207G (pdb code 6k83). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 24 binding sites of Calcium where determined in the Structure of RGLG1 Mutant-D207G, PDB code: 6k83:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 24 in the Structure of RGLG1 Mutant-D207G


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of RGLG1 Mutant-D207G within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca502 b:54.8 occ:1.00 O B:LEU209 2.3 48.0 1.0 OD1 B:ASN156 2.6 41.6 1.0 OD2 B:ASP205 2.6 44.8 1.0 OD1 B:ASP205 2.6 42.5 1.0 CG B:ASP205 2.9 47.5 1.0 C B:LEU209 3.5 52.3 1.0 CG B:ASN156 3.5 40.7 1.0 CB B:ASN156 3.8 38.7 1.0 N B:LEU209 4.2 52.4 1.0 CA B:LEU209 4.2 51.8 1.0 CB B:ASP205 4.4 45.4 1.0 CB B:LEU209 4.4 52.5 1.0 CA B:ASN156 4.5 40.8 1.0 N B:ILE210 4.5 48.2 1.0 N B:LEU157 4.6 38.0 1.0 N B:GLY207 4.7 42.8 1.0 CA B:ILE210 4.7 44.2 1.0 O B:LEU157 4.7 36.9 1.0 ND2 B:ASN156 4.7 38.2 1.0 CD B:PRO211 4.7 39.0 1.0 CA B:ASP205 4.8 45.3 1.0 N B:GLU206 4.8 42.3 1.0 C B:ASP205 5.0 43.4 1.0

Calcium binding site 2 out of 24 in the Structure of RGLG1 Mutant-D207G


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of RGLG1 Mutant-D207G within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca503 b:34.5 occ:1.00 OE2 B:GLU378 2.3 35.6 1.0 OD1 B:ASP338 2.4 35.7 1.0 O B:PHE349 2.4 34.4 1.0 OD1 B:ASP347 2.5 29.6 1.0 O B:ASP338 2.5 29.4 1.0 OE1 B:GLU378 2.6 32.2 1.0 O B:HOH617 2.6 37.5 1.0 OD2 B:ASP347 2.6 35.5 1.0 CD B:GLU378 2.8 37.6 1.0 CG B:ASP347 2.9 35.7 1.0 C B:ASP338 3.4 35.8 1.0 CG B:ASP338 3.6 38.1 1.0 C B:PHE349 3.6 30.9 1.0 CA B:CA504 3.7 41.4 1.0 CA B:ASP338 3.9 34.5 1.0 CB B:ASP347 4.3 37.1 1.0 CG B:GLU378 4.3 32.5 1.0 CB B:ASP338 4.4 32.2 1.0 N B:GLN350 4.4 32.1 1.0 CA B:GLN350 4.4 37.0 1.0 N B:PHE349 4.5 30.2 1.0 O B:ILE133 4.5 45.0 1.0 OD2 B:ASP338 4.5 35.8 1.0 N B:ASP339 4.5 39.6 1.0 OD1 B:ASP339 4.5 49.4 1.0 OE1 B:GLN350 4.5 37.4 1.0 NH2 B:ARG344 4.6 33.2 1.0 CA B:PHE349 4.6 31.3 1.0 CA B:ASP339 4.9 42.3 1.0 NE2 B:GLN382 5.0 32.9 1.0 O B:HOH633 5.0 33.2 1.0 CB B:ILE133 5.0 39.4 1.0 N B:ILE133 5.0 45.3 1.0

Calcium binding site 3 out of 24 in the Structure of RGLG1 Mutant-D207G


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of RGLG1 Mutant-D207G within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca504 b:41.4 occ:1.00 O B:HOH633 2.3 33.2 1.0 OE1 B:GLN350 2.3 37.4 1.0 OD2 B:ASP338 2.4 35.8 1.0 O B:HOH626 2.4 39.9 1.0 OD1 B:ASP338 2.4 35.7 1.0 OE2 B:GLU378 2.5 35.6 1.0 CG B:ASP338 2.7 38.1 1.0 O B:HOH608 2.7 40.6 1.0 O B:HOH617 3.0 37.5 1.0 CD B:GLN350 3.4 38.2 1.0 CD B:GLU378 3.6 37.6 1.0 CA B:CA503 3.7 34.5 1.0 NE2 B:GLN350 3.8 33.0 1.0 OD1 B:ASP339 4.1 49.4 1.0 O B:ILE133 4.2 45.0 1.0 OD1 B:ASP135 4.2 51.1 1.0 CB B:ASP338 4.3 32.2 1.0 CG B:GLU378 4.3 32.5 1.0 OE1 B:GLU378 4.6 32.2 1.0 CA B:GLN350 4.7 37.0 1.0 CG B:GLN350 4.7 36.1 1.0 N B:PHE351 4.7 37.5 1.0 O B:HOH646 4.8 42.2 1.0 O B:PHE349 4.8 34.4 1.0 CB B:GLN350 4.8 31.5 1.0 CG B:ASP339 5.0 49.0 1.0

Calcium binding site 4 out of 24 in the Structure of RGLG1 Mutant-D207G


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of RGLG1 Mutant-D207G within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca502 b:41.0 occ:1.00 OE2 A:GLU378 2.2 34.3 1.0 O A:HOH613 2.4 43.9 1.0 O A:HOH625 2.4 35.7 1.0 OE1 A:GLN350 2.5 35.5 1.0 OD1 A:ASP338 2.5 35.1 1.0 O A:HOH624 2.6 39.5 1.0 OD2 A:ASP338 2.7 40.9 1.0 CG A:ASP338 3.0 35.7 1.0 CD A:GLU378 3.5 33.1 1.0 CD A:GLN350 3.6 34.0 1.0 CA A:CA503 3.7 31.0 1.0 OD1 A:ASP339 4.0 42.0 1.0 NE2 A:GLN350 4.1 29.7 1.0 OD1 A:ASP135 4.2 47.1 1.0 O A:ILE133 4.2 45.9 1.0 CG A:GLU378 4.2 36.6 1.0 OE1 A:GLU378 4.4 36.4 1.0 CB A:ASP338 4.5 33.9 1.0 N A:PHE351 4.7 35.8 1.0 CA A:GLN350 4.7 30.0 1.0 O A:PHE349 4.8 35.9 1.0 CG A:GLN350 4.8 28.4 1.0 CB A:GLN350 4.9 26.4 1.0 CG A:ASP339 5.0 45.3 1.0 O A:HOH621 5.0 38.3 1.0

Calcium binding site 5 out of 24 in the Structure of RGLG1 Mutant-D207G


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of RGLG1 Mutant-D207G within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca503 b:31.0 occ:1.00 OD1 A:ASP338 2.3 35.1 1.0 OD1 A:ASP347 2.4 33.2 1.0 O A:PHE349 2.4 35.9 1.0 OD2 A:ASP347 2.5 36.4 1.0 OE1 A:GLU378 2.5 36.4 1.0 O A:ASP338 2.5 32.9 1.0 O A:HOH624 2.6 39.5 1.0 OE2 A:GLU378 2.6 34.3 1.0 CG A:ASP347 2.7 37.0 1.0 CD A:GLU378 2.9 33.1 1.0 C A:ASP338 3.4 35.3 1.0 CG A:ASP338 3.5 35.7 1.0 C A:PHE349 3.6 30.9 1.0 CA A:CA502 3.7 41.0 1.0 CA A:ASP338 3.8 31.9 1.0 CB A:ASP347 4.2 40.8 1.0 CB A:ASP338 4.3 33.9 1.0 OD1 A:ASP339 4.3 42.0 1.0 CA A:GLN350 4.4 30.0 1.0 CG A:GLU378 4.4 36.6 1.0 N A:GLN350 4.4 30.7 1.0 NH2 A:ARG344 4.4 36.5 1.0 N A:PHE349 4.4 31.5 1.0 O A:ILE133 4.5 45.9 1.0 OD2 A:ASP338 4.5 40.9 1.0 CA A:PHE349 4.5 27.5 1.0 N A:ASP339 4.5 32.3 1.0 OE1 A:GLN350 4.6 35.5 1.0 CA A:ASP339 4.9 36.8 1.0 O A:HOH625 5.0 35.7 1.0

Calcium binding site 6 out of 24 in the Structure of RGLG1 Mutant-D207G


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Structure of RGLG1 Mutant-D207G within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca504 b:56.3 occ:1.00 O A:HOH652 2.3 48.8 1.0 OD1 A:ASN156 2.3 40.2 1.0 OD2 A:ASP205 2.4 44.2 1.0 O A:LEU209 2.7 41.1 1.0 OD1 A:ASP205 2.8 48.3 1.0 CG A:ASP205 2.9 46.4 1.0 CG A:ASN156 3.2 43.4 1.0 CB A:ASN156 3.8 41.1 1.0 C A:LEU209 3.8 46.6 1.0 ND2 A:ASN156 4.2 41.0 1.0 N A:LEU209 4.2 55.2 1.0 CB A:ASP205 4.3 39.8 1.0 N A:GLY207 4.3 41.9 1.0 CA A:ASN156 4.4 34.9 1.0 CA A:LEU209 4.4 52.0 1.0 CB A:LEU209 4.4 47.4 1.0 N A:LEU157 4.6 29.9 1.0 CA A:GLY207 4.7 47.0 1.0 CA A:ASP205 4.7 40.6 1.0 O A:HOH611 4.8 41.2 1.0 N A:ILE210 4.8 44.7 1.0 C A:ASP205 4.8 41.6 1.0 CD A:PRO211 4.9 37.4 1.0 O A:LEU157 4.9 38.7 1.0 N A:GLU206 4.9 37.3 1.0 N A:ASN208 5.0 48.6 1.0 C A:GLY207 5.0 47.9 1.0

Calcium binding site 7 out of 24 in the Structure of RGLG1 Mutant-D207G


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Structure of RGLG1 Mutant-D207G within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca502 b:45.2 occ:1.00 O C:LEU209 2.4 40.9 1.0 OD1 C:ASN156 2.5 36.1 1.0 O C:HOH618 2.6 39.0 1.0 O C:HOH675 2.7 41.0 1.0 OD2 C:ASP205 2.7 43.4 1.0 OD1 C:ASP205 2.7 48.1 1.0 CG C:ASP205 3.0 44.5 1.0 CG C:ASN156 3.4 35.5 1.0 C C:LEU209 3.6 42.8 1.0 CB C:ASN156 3.7 39.8 1.0 N C:LEU209 4.2 48.0 1.0 CA C:LEU209 4.2 50.2 1.0 CB C:LEU209 4.3 47.4 1.0 O C:HOH661 4.4 39.6 1.0 CB C:ASP205 4.5 36.5 1.0 CA C:ASN156 4.5 35.9 1.0 N C:LEU157 4.6 32.1 1.0 N C:GLY207 4.6 43.4 1.0 N C:ILE210 4.6 35.2 1.0 ND2 C:ASN156 4.7 37.0 1.0 CD C:PRO211 4.7 31.6 1.0 CA C:ILE210 4.8 42.5 1.0 O C:LEU157 4.8 35.8 1.0 O C:HOH647 4.9 40.4 1.0 CA C:GLY207 5.0 43.9 1.0

Calcium binding site 8 out of 24 in the Structure of RGLG1 Mutant-D207G


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Structure of RGLG1 Mutant-D207G within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca503 b:33.1 occ:1.00 OD1 C:ASP338 2.3 36.2 1.0 OE2 C:GLU378 2.3 39.6 1.0 OD2 C:ASP347 2.3 36.4 1.0 OD1 C:ASP347 2.4 34.7 1.0 O C:PHE349 2.4 35.9 1.0 OE1 C:GLU378 2.4 29.4 1.0 O C:ASP338 2.6 37.8 1.0 CG C:ASP347 2.7 34.7 1.0 CD C:GLU378 2.7 33.4 1.0 CG C:ASP338 3.5 43.1 1.0 C C:ASP338 3.6 36.1 1.0 C C:PHE349 3.6 32.5 1.0 CA C:CA504 3.8 40.4 1.0 CA C:ASP338 4.0 37.8 1.0 CB C:ASP347 4.1 37.1 1.0 CG C:GLU378 4.2 35.7 1.0 N C:PHE349 4.4 35.9 1.0 O C:ILE133 4.4 38.0 1.0 CB C:ASP338 4.4 35.8 1.0 OD2 C:ASP338 4.4 41.1 1.0 CA C:PHE349 4.5 35.2 1.0 N C:GLN350 4.5 31.7 1.0 CA C:GLN350 4.5 33.2 1.0 NH2 C:ARG344 4.5 37.0 1.0 OE1 C:GLN350 4.6 37.7 1.0 OD1 C:ASP339 4.6 48.1 1.0 N C:ASP339 4.7 38.0 1.0 CG C:ASP339 4.8 46.8 1.0 OD2 C:ASP339 4.8 40.5 1.0 NE2 C:GLN382 4.9 36.0 1.0 CB C:PHE349 4.9 38.1 1.0 CA C:ASP339 4.9 37.3 1.0 CA C:ASP347 5.0 33.2 1.0

Calcium binding site 9 out of 24 in the Structure of RGLG1 Mutant-D207G


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Structure of RGLG1 Mutant-D207G within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca504 b:40.4 occ:1.00 O C:HOH612 2.3 34.5 1.0 OE1 C:GLN350 2.3 37.7 1.0 OE2 C:GLU378 2.4 39.6 1.0 O C:HOH648 2.5 37.1 1.0 OD2 C:ASP338 2.6 41.1 1.0 O C:HOH610 2.6 32.6 1.0 OD1 C:ASP338 2.8 36.2 1.0 CG C:ASP338 3.1 43.1 1.0 CD C:GLN350 3.3 32.3 1.0 CD C:GLU378 3.5 33.4 1.0 NE2 C:GLN350 3.7 29.1 1.0 CA C:CA503 3.8 33.1 1.0 OD2 C:ASP339 4.0 40.5 1.0 CG C:GLU378 4.1 35.7 1.0 OD1 C:ASP135 4.2 48.7 1.0 O C:ILE133 4.2 38.0 1.0 OE1 C:GLU378 4.5 29.4 1.0 CB C:ASP338 4.6 35.8 1.0 CA C:GLN350 4.7 33.2 1.0 CG C:GLN350 4.7 32.2 1.0 O C:PHE349 4.7 35.9 1.0 N C:PHE351 4.8 37.7 1.0 CG C:ASP339 4.8 46.8 1.0 OD1 C:ASP339 4.8 48.1 1.0 CB C:GLN350 4.9 33.1 1.0

Calcium binding site 10 out of 24 in the Structure of RGLG1 Mutant-D207G


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Structure of RGLG1 Mutant-D207G within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca502 b:58.0 occ:1.00 OD1 D:ASN156 2.4 47.7 1.0 OD2 D:ASP205 2.4 44.8 1.0 O D:LEU209 2.4 48.7 1.0 OD1 D:ASP205 2.5 49.1 1.0 CG D:ASP205 2.7 46.4 1.0 CG D:ASN156 3.5 43.0 1.0 C D:LEU209 3.5 50.1 1.0 CB D:ASN156 4.0 40.4 1.0 N D:LEU209 4.2 58.1 1.0 CA D:LEU209 4.2 52.1 1.0 CB D:ASP205 4.2 44.4 1.0 CB D:LEU209 4.3 49.7 1.0 N D:GLY207 4.5 41.5 1.0 N D:ILE210 4.5 45.0 1.0 CA D:ASN156 4.6 39.5 1.0 ND2 D:ASN156 4.6 45.8 1.0 N D:LEU157 4.7 42.5 1.0 O D:LEU157 4.7 35.5 1.0 O D:HOH619 4.7 44.6 1.0 CA D:ILE210 4.7 39.5 1.0 CD D:PRO211 4.8 38.5 1.0 CA D:GLY207 4.8 40.3 1.0 CA D:ASP205 4.8 47.6 1.0 N D:ASN208 4.9 51.1 1.0 N D:GLU206 4.9 40.7 1.0 C D:ASP205 5.0 43.4 1.0

Q.Wang, Y.Wu. RGLG1 Mutant-D207G To Be Published.