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Calcium in PDB 6kcw: Structure of Alginate Lyase ALY36B

Protein crystallography data

The structure of Structure of Alginate Lyase ALY36B, PDB code: 6kcw was solved by F.Dong, X.L.Chen, Y.Z.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.86 / 2.28
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 53.770, 89.492, 46.856, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 23.5

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of Alginate Lyase ALY36B (pdb code 6kcw). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of Alginate Lyase ALY36B, PDB code: 6kcw:

Calcium binding site 1 out of 1 in 6kcw

Go back to Calcium Binding Sites List in 6kcw
Calcium binding site 1 out of 1 in the Structure of Alginate Lyase ALY36B


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Alginate Lyase ALY36B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca302

b:45.2
occ:1.00
O A:HOH406 2.1 30.0 1.0
OD1 A:ASN29 2.2 42.3 1.0
O A:ASN27 2.2 40.6 1.0
O A:GLY61 2.3 44.7 1.0
OD1 A:ASP251 2.5 41.5 1.0
OD2 A:ASP251 2.7 38.3 1.0
O A:HOH408 2.7 35.7 1.0
CG A:ASP251 2.9 43.1 1.0
CG A:ASN29 3.2 46.3 1.0
C A:ASN27 3.4 41.6 1.0
C A:GLY61 3.4 47.0 1.0
ND2 A:ASN29 3.8 45.0 1.0
CB A:ASN27 3.9 39.6 1.0
CA A:ASN27 4.1 42.4 1.0
CA A:GLY61 4.2 47.7 1.0
N A:ASN29 4.2 44.8 1.0
OD1 A:ASN252 4.3 40.4 1.0
C A:TRP28 4.3 44.1 1.0
N A:THR62 4.4 48.9 1.0
CB A:ASP251 4.4 40.7 1.0
CB A:ASN29 4.4 42.7 1.0
N A:TRP28 4.4 44.8 1.0
CA A:ASN29 4.5 44.8 1.0
O A:HOH402 4.5 30.0 1.0
CA A:THR62 4.6 43.3 1.0
CG2 A:THR62 4.7 48.0 1.0
O A:TRP28 4.7 45.2 1.0
CB A:TRP28 4.7 40.2 1.0
CG A:ASN27 4.7 41.8 1.0
CA A:TRP28 4.7 45.4 1.0
CG A:ASN252 4.9 39.0 1.0

Reference:

F.Dong, P.Wang, X.L.Chen, Y.Z.Zhang. Structure of Alginate Lyase ALY36B To Be Published.
Page generated: Tue Jul 16 10:24:08 2024

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