Calcium in PDB 6kg9: Solution Structure of CADOC0917 From Clostridium Acetobutylicum

The binding sites of Calcium atom in the Solution Structure of CADOC0917 From Clostridium Acetobutylicum (pdb code 6kg9). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Solution Structure of CADOC0917 From Clostridium Acetobutylicum, PDB code: 6kg9:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Solution Structure of CADOC0917 From Clostridium Acetobutylicum


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Solution Structure of CADOC0917 From Clostridium Acetobutylicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca101 b:0.0 occ:1.00 OD1 A:ASP6 2.3 0.0 1.0 OD1 A:ASP10 2.3 0.0 1.0 O A:VAL12 2.3 0.0 1.0 OD1 A:ASP17 2.3 0.0 1.0 OD1 A:ASN8 2.3 0.0 1.0 OD1 A:ASN14 2.4 0.0 1.0 OD2 A:ASP17 2.4 0.0 1.0 CG A:ASP17 2.7 0.0 1.0 CG A:ASP10 3.0 0.0 1.0 H A:ASN14 3.2 0.0 1.0 HA A:ASP6 3.2 0.0 1.0 OD2 A:ASP10 3.2 0.0 1.0 CG A:ASP6 3.4 0.0 1.0 H A:VAL12 3.4 0.0 1.0 H A:ASP10 3.5 0.0 1.0 CG A:ASN8 3.5 0.0 1.0 C A:VAL12 3.5 0.0 1.0 H A:ASN8 3.5 0.0 1.0 CG A:ASN14 3.6 0.0 1.0 HA A:VAL13 3.7 0.0 1.0 HD22 A:ASN8 3.8 0.0 1.0 HG12 A:VAL12 3.8 0.0 1.0 HB2 A:ASP6 3.9 0.0 1.0 HD22 A:ASN14 4.0 0.0 1.0 CB A:ASP6 4.0 0.0 1.0 CA A:ASP6 4.0 0.0 1.0 N A:ASN14 4.0 0.0 1.0 H A:LEU7 4.0 0.0 1.0 ND2 A:ASN8 4.1 0.0 1.0 H A:ASP9 4.2 0.0 1.0 CB A:ASP17 4.2 0.0 1.0 ND2 A:ASN14 4.2 0.0 1.0 HB2 A:ARG16 4.2 0.0 1.0 N A:VAL12 4.2 0.0 1.0 N A:ASP10 4.3 0.0 1.0 CB A:ASP10 4.3 0.0 1.0 OD2 A:ASP6 4.4 0.0 1.0 H A:ASP17 4.4 0.0 1.0 N A:ASN8 4.4 0.0 1.0 N A:VAL13 4.4 0.0 1.0 H A:GLY11 4.4 0.0 1.0 CA A:VAL12 4.5 0.0 1.0 N A:LEU7 4.5 0.0 1.0 CA A:VAL13 4.5 0.0 1.0 C A:ASP6 4.5 0.0 1.0 HG13 A:VAL12 4.5 0.0 1.0 HB3 A:ASP10 4.6 0.0 1.0 CG1 A:VAL12 4.6 0.0 1.0 CB A:ASN14 4.6 0.0 1.0 HB2 A:ASP17 4.6 0.0 1.0 N A:ASP9 4.7 0.0 1.0 O A:GLY5 4.7 0.0 1.0 CB A:ASN8 4.7 0.0 1.0 N A:ASP17 4.7 0.0 1.0 CA A:ASP10 4.7 0.0 1.0 HA A:ASP17 4.7 0.0 1.0 C A:VAL13 4.7 0.0 1.0 CA A:ASN14 4.8 0.0 1.0 HB3 A:ASP17 4.8 0.0 1.0 CA A:ASP17 4.8 0.0 1.0 O A:ASN14 4.9 0.0 1.0 N A:GLY11 4.9 0.0 1.0 CA A:ASN8 4.9 0.0 1.0 HB3 A:ASN14 5.0 0.0 1.0

Calcium binding site 2 out of 2 in the Solution Structure of CADOC0917 From Clostridium Acetobutylicum


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Solution Structure of CADOC0917 From Clostridium Acetobutylicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca102 b:0.0 occ:1.00 OD1 A:ASP39 2.3 0.0 1.0 OD1 A:ASP50 2.3 0.0 1.0 O A:ALA45 2.3 0.0 1.0 OD2 A:ASP43 2.4 0.0 1.0 OD1 A:ASN41 2.4 0.0 1.0 OD2 A:ASP50 2.4 0.0 1.0 OD1 A:ASN47 2.6 0.0 1.0 OD1 A:ASP43 2.6 0.0 1.0 CG A:ASP50 2.7 0.0 1.0 CG A:ASP43 2.8 0.0 1.0 HD22 A:ASN47 3.1 0.0 1.0 CG A:ASN47 3.3 0.0 1.0 H A:ASP43 3.4 0.0 1.0 H A:ASN47 3.4 0.0 1.0 HA A:ASP39 3.4 0.0 1.0 CG A:ASN41 3.4 0.0 1.0 CG A:ASP39 3.5 0.0 1.0 H A:ALA45 3.5 0.0 1.0 ND2 A:ASN47 3.5 0.0 1.0 C A:ALA45 3.5 0.0 1.0 HD22 A:ASN41 3.6 0.0 1.0 HA A:VAL46 3.8 0.0 1.0 H A:ASN41 3.8 0.0 1.0 HB2 A:ARG49 3.9 0.0 1.0 ND2 A:ASN41 3.9 0.0 1.0 CB A:ASP43 4.1 0.0 1.0 N A:ASN47 4.1 0.0 1.0 N A:ASP43 4.2 0.0 1.0 H A:ASP50 4.2 0.0 1.0 CB A:ASP50 4.2 0.0 1.0 HB1 A:ALA45 4.2 0.0 1.0 CB A:ASP39 4.2 0.0 1.0 HB2 A:ASP39 4.2 0.0 1.0 CA A:ASP39 4.2 0.0 1.0 N A:ALA45 4.2 0.0 1.0 H A:GLY42 4.3 0.0 1.0 H A:GLY44 4.3 0.0 1.0 HB3 A:ASP43 4.4 0.0 1.0 OD2 A:ASP39 4.4 0.0 1.0 HD21 A:ASN47 4.4 0.0 1.0 CA A:ALA45 4.4 0.0 1.0 N A:VAL46 4.4 0.0 1.0 H A:ILE40 4.5 0.0 1.0 CA A:VAL46 4.5 0.0 1.0 CA A:ASP43 4.6 0.0 1.0 N A:ASP50 4.6 0.0 1.0 HB2 A:ASP50 4.6 0.0 1.0 CB A:ASN41 4.6 0.0 1.0 CB A:ASN47 4.6 0.0 1.0 N A:ASN41 4.7 0.0 1.0 N A:GLY42 4.7 0.0 1.0 C A:ASP39 4.7 0.0 1.0 HB3 A:ASP50 4.7 0.0 1.0 N A:GLY44 4.8 0.0 1.0 HB3 A:ASN41 4.8 0.0 1.0 C A:VAL46 4.8 0.0 1.0 CA A:ASP50 4.8 0.0 1.0 HB2 A:ASP43 4.8 0.0 1.0 HA A:ASP50 4.8 0.0 1.0 N A:ILE40 4.9 0.0 1.0 CB A:ALA45 4.9 0.0 1.0 HD21 A:ASN41 4.9 0.0 1.0 CA A:ASN47 4.9 0.0 1.0 CB A:ARG49 4.9 0.0 1.0 C A:ASP43 5.0 0.0 1.0

X.Yao, C.Chen, Y.Wang, S.Dong, Y.J.Liu, Y.Li, Z.Cui, W.Gong, S.Perrett, L.Yao, R.Lamed, E.A.Bayer, Q.Cui, Y.Feng. Discovery and Mechanism of A pH-Dependent Dual-Binding-Site Switch in the Interaction of A Pair of Protein Modules. Sci Adv V. 6 2020.
ISSN: ESSN 2375-2548
PubMed: 33097546
DOI: 10.1126/SCIADV.ABD7182