Calcium in PDB 6klw: Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Long Stem
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Calcium atom in the Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Long Stem
(pdb code 6klw). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 14 binding sites of Calcium where determined in the
Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Long Stem, PDB code: 6klw:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 14 in 6klw
Go back to
Calcium Binding Sites List in 6klw
Calcium binding site 1 out
of 14 in the Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Long Stem
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Long Stem within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1001
b:28.8
occ:1.00
|
OD2
|
A:ASP221
|
2.3
|
32.0
|
1.0
|
|
O
|
A:GLU262
|
2.3
|
32.8
|
1.0
|
|
O
|
A:SER259
|
2.4
|
30.5
|
1.0
|
|
OE2
|
A:GLU230
|
2.4
|
31.0
|
1.0
|
|
OD2
|
A:ASP272
|
2.4
|
26.0
|
1.0
|
|
OD2
|
A:ASP223
|
2.8
|
31.5
|
1.0
|
|
CD
|
A:GLU230
|
2.9
|
31.0
|
1.0
|
|
OE1
|
A:GLU230
|
2.9
|
31.0
|
1.0
|
|
CG
|
A:ASP221
|
3.5
|
32.0
|
1.0
|
|
C
|
A:SER259
|
3.5
|
30.5
|
1.0
|
|
C
|
A:GLU262
|
3.6
|
32.8
|
1.0
|
|
CG
|
A:ASP272
|
3.6
|
26.0
|
1.0
|
|
CG
|
A:ASP223
|
3.7
|
31.5
|
1.0
|
|
OD1
|
A:ASP223
|
4.0
|
31.5
|
1.0
|
|
CA
|
A:CA1002
|
4.0
|
25.9
|
1.0
|
|
CA
|
A:TYR260
|
4.2
|
32.3
|
1.0
|
|
CG
|
A:GLU230
|
4.2
|
31.0
|
1.0
|
|
CB
|
A:ASP272
|
4.2
|
26.0
|
1.0
|
|
CA
|
A:SER263
|
4.3
|
29.2
|
1.0
|
|
OD1
|
A:ASP221
|
4.3
|
32.0
|
1.0
|
|
OG1
|
A:THR265
|
4.3
|
27.3
|
1.0
|
|
CB
|
A:SER258
|
4.3
|
29.3
|
1.0
|
|
N
|
A:TYR260
|
4.3
|
32.3
|
1.0
|
|
N
|
A:SER263
|
4.4
|
29.2
|
1.0
|
|
N
|
A:GLU262
|
4.4
|
32.8
|
1.0
|
|
N
|
A:SER259
|
4.4
|
30.5
|
1.0
|
|
C
|
A:TYR260
|
4.5
|
32.3
|
1.0
|
|
CB
|
A:ASP221
|
4.5
|
32.0
|
1.0
|
|
CA
|
A:SER259
|
4.5
|
30.5
|
1.0
|
|
CA
|
A:GLU262
|
4.6
|
32.8
|
1.0
|
|
OD1
|
A:ASP272
|
4.6
|
26.0
|
1.0
|
|
C
|
A:SER263
|
4.8
|
29.2
|
1.0
|
|
CB
|
A:ASP223
|
4.8
|
31.5
|
1.0
|
|
N
|
A:LEU261
|
4.9
|
31.9
|
1.0
|
|
O
|
A:SER263
|
4.9
|
29.2
|
1.0
|
|
O
|
A:TYR260
|
4.9
|
32.3
|
1.0
|
|
CB
|
A:GLU230
|
5.0
|
31.0
|
1.0
|
|
Calcium binding site 2 out
of 14 in 6klw
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Calcium Binding Sites List in 6klw
Calcium binding site 2 out
of 14 in the Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Long Stem
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Long Stem within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1002
b:25.9
occ:1.00
|
OD1
|
A:ASP221
|
2.3
|
32.0
|
1.0
|
|
O
|
A:ILE225
|
2.3
|
31.4
|
1.0
|
|
OD1
|
A:ASP219
|
2.4
|
35.6
|
1.0
|
|
OD1
|
A:ASP223
|
2.5
|
31.5
|
1.0
|
|
OE1
|
A:GLU230
|
2.7
|
31.0
|
1.0
|
|
OD2
|
A:ASP221
|
3.0
|
32.0
|
1.0
|
|
CG
|
A:ASP221
|
3.0
|
32.0
|
1.0
|
|
CD
|
A:GLU230
|
3.1
|
31.0
|
1.0
|
|
OE2
|
A:GLU230
|
3.3
|
31.0
|
1.0
|
|
CG
|
A:ASP223
|
3.5
|
31.5
|
1.0
|
|
C
|
A:ILE225
|
3.5
|
31.4
|
1.0
|
|
CG
|
A:ASP219
|
3.6
|
35.6
|
1.0
|
|
OD2
|
A:ASP223
|
3.8
|
31.5
|
1.0
|
|
CA
|
A:CA1001
|
4.0
|
28.8
|
1.0
|
|
OD1
|
A:ASP227
|
4.0
|
34.8
|
1.0
|
|
N
|
A:ILE225
|
4.2
|
31.4
|
1.0
|
|
CA
|
A:ILE225
|
4.2
|
31.4
|
1.0
|
|
CB
|
A:ILE225
|
4.2
|
31.4
|
1.0
|
|
CG
|
A:GLU230
|
4.3
|
31.0
|
1.0
|
|
OD2
|
A:ASP219
|
4.3
|
35.6
|
1.0
|
|
O
|
A:TYR260
|
4.4
|
32.3
|
1.0
|
|
O
|
A:PRO226
|
4.4
|
34.6
|
1.0
|
|
C
|
A:PRO226
|
4.4
|
34.6
|
1.0
|
|
CB
|
A:ASP221
|
4.4
|
32.0
|
1.0
|
|
CA
|
A:ASP219
|
4.6
|
35.6
|
1.0
|
|
N
|
A:PRO226
|
4.6
|
34.6
|
1.0
|
|
N
|
A:ASP221
|
4.6
|
32.0
|
1.0
|
|
N
|
A:ASP223
|
4.6
|
31.5
|
1.0
|
|
CB
|
A:ASP219
|
4.7
|
35.6
|
1.0
|
|
CA
|
A:TYR260
|
4.7
|
32.3
|
1.0
|
|
CA
|
A:PRO226
|
4.7
|
34.6
|
1.0
|
|
N
|
A:ASP227
|
4.8
|
34.8
|
1.0
|
|
CB
|
A:ASP223
|
4.8
|
31.5
|
1.0
|
|
N
|
A:THR220
|
4.8
|
32.2
|
1.0
|
|
N
|
A:ASN222
|
4.9
|
34.1
|
1.0
|
|
C
|
A:TYR260
|
4.9
|
32.3
|
1.0
|
|
CB
|
A:GLU230
|
4.9
|
31.0
|
1.0
|
|
CA
|
A:ASP221
|
5.0
|
32.0
|
1.0
|
|
C
|
A:ASP219
|
5.0
|
35.6
|
1.0
|
|
Calcium binding site 3 out
of 14 in 6klw
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Calcium Binding Sites List in 6klw
Calcium binding site 3 out
of 14 in the Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Long Stem
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Long Stem within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1001
b:26.8
occ:1.00
|
OE1
|
B:GLU230
|
2.3
|
29.0
|
1.0
|
|
O
|
B:GLU262
|
2.3
|
30.9
|
1.0
|
|
OD2
|
B:ASP272
|
2.4
|
24.2
|
1.0
|
|
OD2
|
B:ASP223
|
2.4
|
30.6
|
1.0
|
|
O
|
B:SER259
|
2.5
|
29.8
|
1.0
|
|
OD2
|
B:ASP221
|
2.5
|
31.6
|
1.0
|
|
CD
|
B:GLU230
|
3.1
|
29.0
|
1.0
|
|
OE2
|
B:GLU230
|
3.3
|
29.0
|
1.0
|
|
C
|
B:GLU262
|
3.5
|
30.9
|
1.0
|
|
CG
|
B:ASP223
|
3.5
|
30.6
|
1.0
|
|
CG
|
B:ASP272
|
3.5
|
24.2
|
1.0
|
|
C
|
B:SER259
|
3.6
|
29.8
|
1.0
|
|
CG
|
B:ASP221
|
3.6
|
31.6
|
1.0
|
|
CA
|
B:SER263
|
4.0
|
25.9
|
1.0
|
|
OD1
|
B:ASP221
|
4.1
|
31.6
|
1.0
|
|
CA
|
B:TYR260
|
4.1
|
32.1
|
1.0
|
|
OD1
|
B:ASP223
|
4.1
|
30.6
|
1.0
|
|
N
|
B:SER263
|
4.2
|
25.9
|
1.0
|
|
OG
|
B:SER258
|
4.2
|
26.6
|
1.0
|
|
CB
|
B:ASP272
|
4.2
|
24.2
|
1.0
|
|
N
|
B:TYR260
|
4.3
|
32.1
|
1.0
|
|
CA
|
B:CA1002
|
4.3
|
26.9
|
1.0
|
|
N
|
B:GLU262
|
4.4
|
30.9
|
1.0
|
|
C
|
B:TYR260
|
4.4
|
32.1
|
1.0
|
|
OG1
|
B:THR265
|
4.4
|
24.2
|
1.0
|
|
CG
|
B:GLU230
|
4.5
|
29.0
|
1.0
|
|
C
|
B:SER263
|
4.5
|
25.9
|
1.0
|
|
CA
|
B:GLU262
|
4.5
|
30.9
|
1.0
|
|
OD1
|
B:ASP272
|
4.5
|
24.2
|
1.0
|
|
O
|
B:SER263
|
4.6
|
25.9
|
1.0
|
|
CB
|
B:ASP223
|
4.6
|
30.6
|
1.0
|
|
N
|
B:SER259
|
4.6
|
29.8
|
1.0
|
|
CA
|
B:SER259
|
4.7
|
29.8
|
1.0
|
|
O
|
B:TYR260
|
4.8
|
32.1
|
1.0
|
|
N
|
B:LEU261
|
4.8
|
31.2
|
1.0
|
|
CB
|
B:ASP221
|
4.9
|
31.6
|
1.0
|
|
CB
|
B:SER258
|
4.9
|
26.6
|
1.0
|
|
Calcium binding site 4 out
of 14 in 6klw
Go back to
Calcium Binding Sites List in 6klw
Calcium binding site 4 out
of 14 in the Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Long Stem
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Long Stem within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1002
b:26.9
occ:1.00
|
OE2
|
B:GLU230
|
2.3
|
29.0
|
1.0
|
|
OD1
|
B:ASP221
|
2.3
|
31.6
|
1.0
|
|
OD1
|
B:ASP219
|
2.3
|
35.6
|
1.0
|
|
OD1
|
B:ASP223
|
2.4
|
30.6
|
1.0
|
|
O
|
B:ILE225
|
2.5
|
28.8
|
1.0
|
|
CG
|
B:ASP223
|
3.3
|
30.6
|
1.0
|
|
CG
|
B:ASP221
|
3.4
|
31.6
|
1.0
|
|
CD
|
B:GLU230
|
3.4
|
29.0
|
1.0
|
|
OD1
|
B:ASP227
|
3.5
|
33.7
|
1.0
|
|
CG
|
B:ASP219
|
3.5
|
35.6
|
1.0
|
|
OD2
|
B:ASP223
|
3.6
|
30.6
|
1.0
|
|
C
|
B:ILE225
|
3.7
|
28.8
|
1.0
|
|
OD2
|
B:ASP221
|
3.7
|
31.6
|
1.0
|
|
OE1
|
B:GLU230
|
4.1
|
29.0
|
1.0
|
|
O
|
B:TYR260
|
4.1
|
32.1
|
1.0
|
|
OD2
|
B:ASP219
|
4.2
|
35.6
|
1.0
|
|
CA
|
B:CA1001
|
4.3
|
26.8
|
1.0
|
|
N
|
B:ASP221
|
4.3
|
31.6
|
1.0
|
|
C
|
B:PRO226
|
4.4
|
31.6
|
1.0
|
|
N
|
B:THR220
|
4.4
|
32.7
|
1.0
|
|
N
|
B:ASP223
|
4.4
|
30.6
|
1.0
|
|
CA
|
B:ASP219
|
4.5
|
35.6
|
1.0
|
|
N
|
B:ILE225
|
4.5
|
28.8
|
1.0
|
|
CA
|
B:ILE225
|
4.5
|
28.8
|
1.0
|
|
CG
|
B:GLU230
|
4.5
|
29.0
|
1.0
|
|
N
|
B:ASP227
|
4.5
|
33.7
|
1.0
|
|
CA
|
B:TYR260
|
4.5
|
32.1
|
1.0
|
|
CB
|
B:ILE225
|
4.6
|
28.8
|
1.0
|
|
CB
|
B:ASP219
|
4.6
|
35.6
|
1.0
|
|
O
|
B:PRO226
|
4.6
|
31.6
|
1.0
|
|
N
|
B:PRO226
|
4.6
|
31.6
|
1.0
|
|
N
|
B:ASN222
|
4.7
|
35.3
|
1.0
|
|
CB
|
B:ASP223
|
4.7
|
30.6
|
1.0
|
|
CB
|
B:ASP221
|
4.7
|
31.6
|
1.0
|
|
CA
|
B:PRO226
|
4.7
|
31.6
|
1.0
|
|
C
|
B:TYR260
|
4.7
|
32.1
|
1.0
|
|
CG
|
B:ASP227
|
4.7
|
33.7
|
1.0
|
|
C
|
B:ASP219
|
4.8
|
35.6
|
1.0
|
|
CB
|
B:TYR260
|
4.8
|
32.1
|
1.0
|
|
CA
|
B:ASP221
|
4.9
|
31.6
|
1.0
|
|
CA
|
B:ASP227
|
4.9
|
33.7
|
1.0
|
|
CA
|
B:ASP223
|
5.0
|
30.6
|
1.0
|
|
C
|
B:ASP221
|
5.0
|
31.6
|
1.0
|
|
Calcium binding site 5 out
of 14 in 6klw
Go back to
Calcium Binding Sites List in 6klw
Calcium binding site 5 out
of 14 in the Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Long Stem
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Long Stem within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca1001
b:26.2
occ:1.00
|
O
|
C:GLU262
|
2.3
|
32.8
|
1.0
|
|
OD2
|
C:ASP272
|
2.4
|
26.3
|
1.0
|
|
OE1
|
C:GLU230
|
2.4
|
30.1
|
1.0
|
|
OD2
|
C:ASP221
|
2.4
|
32.8
|
1.0
|
|
O
|
C:SER259
|
2.5
|
29.4
|
1.0
|
|
OE2
|
C:GLU230
|
2.9
|
30.1
|
1.0
|
|
CD
|
C:GLU230
|
3.0
|
30.1
|
1.0
|
|
OD2
|
C:ASP223
|
3.0
|
32.9
|
1.0
|
|
CG
|
C:ASP272
|
3.5
|
26.3
|
1.0
|
|
C
|
C:GLU262
|
3.6
|
32.8
|
1.0
|
|
CG
|
C:ASP221
|
3.6
|
32.8
|
1.0
|
|
C
|
C:SER259
|
3.6
|
29.4
|
1.0
|
|
CG
|
C:ASP223
|
3.8
|
32.9
|
1.0
|
|
OD1
|
C:ASP223
|
4.0
|
32.9
|
1.0
|
|
CB
|
C:ASP272
|
4.1
|
26.3
|
1.0
|
|
CA
|
C:TYR260
|
4.2
|
32.6
|
1.0
|
|
OG1
|
C:THR265
|
4.2
|
24.4
|
1.0
|
|
OD1
|
C:ASP221
|
4.2
|
32.8
|
1.0
|
|
CB
|
C:SER258
|
4.3
|
27.3
|
1.0
|
|
CA
|
C:CA1002
|
4.3
|
29.2
|
1.0
|
|
CA
|
C:SER263
|
4.3
|
28.6
|
1.0
|
|
N
|
C:GLU262
|
4.3
|
32.8
|
1.0
|
|
N
|
C:TYR260
|
4.3
|
32.6
|
1.0
|
|
N
|
C:SER263
|
4.4
|
28.6
|
1.0
|
|
CG
|
C:GLU230
|
4.5
|
30.1
|
1.0
|
|
N
|
C:SER259
|
4.5
|
29.4
|
1.0
|
|
OD1
|
C:ASP272
|
4.5
|
26.3
|
1.0
|
|
CA
|
C:GLU262
|
4.5
|
32.8
|
1.0
|
|
O
|
C:SER263
|
4.6
|
28.6
|
1.0
|
|
C
|
C:TYR260
|
4.6
|
32.6
|
1.0
|
|
CB
|
C:ASP221
|
4.6
|
32.8
|
1.0
|
|
CA
|
C:SER259
|
4.6
|
29.4
|
1.0
|
|
C
|
C:SER263
|
4.7
|
28.6
|
1.0
|
|
N
|
C:LEU261
|
4.9
|
31.8
|
1.0
|
|
CB
|
C:ASP223
|
5.0
|
32.9
|
1.0
|
|
Calcium binding site 6 out
of 14 in 6klw
Go back to
Calcium Binding Sites List in 6klw
Calcium binding site 6 out
of 14 in the Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Long Stem
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Long Stem within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca1002
b:29.2
occ:1.00
|
OD1
|
C:ASP221
|
2.2
|
32.8
|
1.0
|
|
O
|
C:ILE225
|
2.3
|
32.4
|
1.0
|
|
OD1
|
C:ASP219
|
2.4
|
38.0
|
1.0
|
|
OE2
|
C:GLU230
|
2.4
|
30.1
|
1.0
|
|
OD1
|
C:ASP223
|
2.5
|
32.9
|
1.0
|
|
CG
|
C:ASP221
|
3.1
|
32.8
|
1.0
|
|
OD2
|
C:ASP221
|
3.3
|
32.8
|
1.0
|
|
C
|
C:ILE225
|
3.4
|
32.4
|
1.0
|
|
CD
|
C:GLU230
|
3.5
|
30.1
|
1.0
|
|
CG
|
C:ASP219
|
3.6
|
38.0
|
1.0
|
|
CG
|
C:ASP223
|
3.6
|
32.9
|
1.0
|
|
N
|
C:ILE225
|
4.0
|
32.4
|
1.0
|
|
OD1
|
C:ASP227
|
4.0
|
35.2
|
1.0
|
|
CA
|
C:ILE225
|
4.1
|
32.4
|
1.0
|
|
OD2
|
C:ASP223
|
4.2
|
32.9
|
1.0
|
|
CG
|
C:GLU230
|
4.2
|
30.1
|
1.0
|
|
OD2
|
C:ASP219
|
4.2
|
38.0
|
1.0
|
|
CB
|
C:ILE225
|
4.3
|
32.4
|
1.0
|
|
CA
|
C:CA1001
|
4.3
|
26.2
|
1.0
|
|
N
|
C:ASP221
|
4.4
|
32.8
|
1.0
|
|
OE1
|
C:GLU230
|
4.4
|
30.1
|
1.0
|
|
N
|
C:ASP223
|
4.4
|
32.9
|
1.0
|
|
C
|
C:PRO226
|
4.5
|
33.8
|
1.0
|
|
N
|
C:PRO226
|
4.5
|
33.8
|
1.0
|
|
CB
|
C:ASP221
|
4.5
|
32.8
|
1.0
|
|
N
|
C:THR220
|
4.5
|
33.2
|
1.0
|
|
CA
|
C:ASP219
|
4.6
|
38.0
|
1.0
|
|
O
|
C:PRO226
|
4.6
|
33.8
|
1.0
|
|
O
|
C:TYR260
|
4.6
|
32.6
|
1.0
|
|
CB
|
C:ASP219
|
4.6
|
38.0
|
1.0
|
|
CA
|
C:PRO226
|
4.6
|
33.8
|
1.0
|
|
N
|
C:ASN222
|
4.6
|
35.8
|
1.0
|
|
N
|
C:ASP227
|
4.7
|
35.2
|
1.0
|
|
CB
|
C:ASP223
|
4.8
|
32.9
|
1.0
|
|
C
|
C:ASP219
|
4.8
|
38.0
|
1.0
|
|
CA
|
C:ASP221
|
4.8
|
32.8
|
1.0
|
|
CA
|
C:TYR260
|
4.8
|
32.6
|
1.0
|
|
N
|
C:ASN224
|
4.9
|
42.5
|
1.0
|
|
CA
|
C:ASP223
|
4.9
|
32.9
|
1.0
|
|
C
|
C:ASP223
|
5.0
|
32.9
|
1.0
|
|
C
|
C:ASP221
|
5.0
|
32.8
|
1.0
|
|
Calcium binding site 7 out
of 14 in 6klw
Go back to
Calcium Binding Sites List in 6klw
Calcium binding site 7 out
of 14 in the Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Long Stem
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Long Stem within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca1001
b:25.3
occ:1.00
|
OE2
|
D:GLU230
|
2.2
|
30.2
|
1.0
|
|
O
|
D:GLU262
|
2.2
|
30.2
|
1.0
|
|
OD2
|
D:ASP272
|
2.4
|
24.5
|
1.0
|
|
OD2
|
D:ASP221
|
2.4
|
32.5
|
1.0
|
|
O
|
D:SER259
|
2.4
|
28.5
|
1.0
|
|
OD2
|
D:ASP223
|
3.2
|
30.2
|
1.0
|
|
CD
|
D:GLU230
|
3.2
|
30.2
|
1.0
|
|
C
|
D:GLU262
|
3.4
|
30.2
|
1.0
|
|
CG
|
D:ASP272
|
3.5
|
24.5
|
1.0
|
|
CG
|
D:ASP221
|
3.6
|
32.5
|
1.0
|
|
C
|
D:SER259
|
3.6
|
28.5
|
1.0
|
|
OE1
|
D:GLU230
|
3.7
|
30.2
|
1.0
|
|
CG
|
D:ASP223
|
3.8
|
30.2
|
1.0
|
|
OG1
|
D:THR265
|
3.8
|
24.1
|
1.0
|
|
OD1
|
D:ASP223
|
3.9
|
30.2
|
1.0
|
|
O
|
D:SER263
|
4.0
|
26.6
|
1.0
|
|
CA
|
D:SER263
|
4.0
|
26.6
|
1.0
|
|
CB
|
D:ASP272
|
4.0
|
24.5
|
1.0
|
|
OG
|
D:SER258
|
4.2
|
27.0
|
1.0
|
|
N
|
D:SER263
|
4.2
|
26.6
|
1.0
|
|
C
|
D:SER263
|
4.2
|
26.6
|
1.0
|
|
CA
|
D:CA1002
|
4.3
|
25.5
|
1.0
|
|
OD1
|
D:ASP221
|
4.4
|
32.5
|
1.0
|
|
CG
|
D:GLU230
|
4.4
|
30.2
|
1.0
|
|
N
|
D:SER259
|
4.5
|
28.5
|
1.0
|
|
N
|
D:GLU262
|
4.5
|
30.2
|
1.0
|
|
CA
|
D:TYR260
|
4.5
|
31.5
|
1.0
|
|
OD1
|
D:ASP272
|
4.5
|
24.5
|
1.0
|
|
CA
|
D:GLU262
|
4.5
|
30.2
|
1.0
|
|
N
|
D:TYR260
|
4.5
|
31.5
|
1.0
|
|
CB
|
D:ASP221
|
4.5
|
32.5
|
1.0
|
|
CA
|
D:SER259
|
4.6
|
28.5
|
1.0
|
|
CB
|
D:SER258
|
4.8
|
27.0
|
1.0
|
|
C
|
D:TYR260
|
4.9
|
31.5
|
1.0
|
|
CB
|
D:ASP223
|
4.9
|
30.2
|
1.0
|
|
CB
|
D:SER259
|
5.0
|
28.5
|
1.0
|
|
Calcium binding site 8 out
of 14 in 6klw
Go back to
Calcium Binding Sites List in 6klw
Calcium binding site 8 out
of 14 in the Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Long Stem
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Long Stem within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca1002
b:25.5
occ:1.00
|
OD1
|
D:ASP221
|
2.2
|
32.5
|
1.0
|
|
O
|
D:ILE225
|
2.3
|
28.9
|
1.0
|
|
OE1
|
D:GLU230
|
2.3
|
30.2
|
1.0
|
|
OD1
|
D:ASP219
|
2.4
|
40.1
|
1.0
|
|
OD1
|
D:ASP223
|
2.4
|
30.2
|
1.0
|
|
CG
|
D:ASP221
|
3.0
|
32.5
|
1.0
|
|
OD2
|
D:ASP221
|
3.0
|
32.5
|
1.0
|
|
CD
|
D:GLU230
|
3.4
|
30.2
|
1.0
|
|
C
|
D:ILE225
|
3.5
|
28.9
|
1.0
|
|
CG
|
D:ASP219
|
3.6
|
40.1
|
1.0
|
|
CG
|
D:ASP223
|
3.6
|
30.2
|
1.0
|
|
OE2
|
D:GLU230
|
3.8
|
30.2
|
1.0
|
|
N
|
D:ILE225
|
4.1
|
28.9
|
1.0
|
|
CA
|
D:ILE225
|
4.1
|
28.9
|
1.0
|
|
OD2
|
D:ASP223
|
4.2
|
30.2
|
1.0
|
|
CB
|
D:ILE225
|
4.2
|
28.9
|
1.0
|
|
OD2
|
D:ASP219
|
4.2
|
40.1
|
1.0
|
|
CA
|
D:CA1001
|
4.3
|
25.3
|
1.0
|
|
OD1
|
D:ASP227
|
4.3
|
34.6
|
1.0
|
|
O
|
D:PRO226
|
4.4
|
32.9
|
1.0
|
|
CB
|
D:ASP221
|
4.4
|
32.5
|
1.0
|
|
C
|
D:PRO226
|
4.4
|
32.9
|
1.0
|
|
N
|
D:ASP223
|
4.5
|
30.2
|
1.0
|
|
O
|
D:TYR260
|
4.5
|
31.5
|
1.0
|
|
N
|
D:PRO226
|
4.5
|
32.9
|
1.0
|
|
N
|
D:ASP221
|
4.6
|
32.5
|
1.0
|
|
CA
|
D:TYR260
|
4.6
|
31.5
|
1.0
|
|
CG
|
D:GLU230
|
4.7
|
30.2
|
1.0
|
|
CA
|
D:PRO226
|
4.7
|
32.9
|
1.0
|
|
CB
|
D:ASP219
|
4.7
|
40.1
|
1.0
|
|
N
|
D:ASN222
|
4.7
|
38.7
|
1.0
|
|
CA
|
D:ASP219
|
4.7
|
40.1
|
1.0
|
|
CB
|
D:GLU230
|
4.8
|
30.2
|
1.0
|
|
CB
|
D:ASP223
|
4.8
|
30.2
|
1.0
|
|
N
|
D:THR220
|
4.8
|
36.9
|
1.0
|
|
N
|
D:ASP227
|
4.9
|
34.6
|
1.0
|
|
C
|
D:TYR260
|
4.9
|
31.5
|
1.0
|
|
CA
|
D:ASP221
|
4.9
|
32.5
|
1.0
|
|
C
|
D:ASP219
|
4.9
|
40.1
|
1.0
|
|
CB
|
D:TYR260
|
5.0
|
31.5
|
1.0
|
|
CA
|
D:ASP223
|
5.0
|
30.2
|
1.0
|
|
Calcium binding site 9 out
of 14 in 6klw
Go back to
Calcium Binding Sites List in 6klw
Calcium binding site 9 out
of 14 in the Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Long Stem
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Long Stem within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca1001
b:27.9
occ:1.00
|
OE2
|
E:GLU230
|
2.2
|
31.5
|
1.0
|
|
OD1
|
E:ASP221
|
2.3
|
33.8
|
1.0
|
|
OD1
|
E:ASP219
|
2.3
|
38.0
|
1.0
|
|
O
|
E:ILE225
|
2.4
|
32.1
|
1.0
|
|
OD1
|
E:ASP223
|
2.4
|
34.4
|
1.0
|
|
CG
|
E:ASP221
|
3.3
|
33.8
|
1.0
|
|
CD
|
E:GLU230
|
3.4
|
31.5
|
1.0
|
|
CG
|
E:ASP223
|
3.5
|
34.4
|
1.0
|
|
CG
|
E:ASP219
|
3.5
|
38.0
|
1.0
|
|
OD2
|
E:ASP221
|
3.6
|
33.8
|
1.0
|
|
OD1
|
E:ASP227
|
3.6
|
35.1
|
1.0
|
|
C
|
E:ILE225
|
3.6
|
32.1
|
1.0
|
|
OD2
|
E:ASP223
|
3.9
|
34.4
|
1.0
|
|
CG
|
E:GLU230
|
4.1
|
31.5
|
1.0
|
|
O
|
E:TYR260
|
4.2
|
31.2
|
1.0
|
|
OD2
|
E:ASP219
|
4.3
|
38.0
|
1.0
|
|
C
|
E:PRO226
|
4.3
|
34.2
|
1.0
|
|
CA
|
E:ASP219
|
4.4
|
38.0
|
1.0
|
|
N
|
E:ILE225
|
4.4
|
32.1
|
1.0
|
|
N
|
E:ASP221
|
4.4
|
33.8
|
1.0
|
|
CA
|
E:ILE225
|
4.4
|
32.1
|
1.0
|
|
OE1
|
E:GLU230
|
4.4
|
31.5
|
1.0
|
|
O
|
E:PRO226
|
4.4
|
34.2
|
1.0
|
|
N
|
E:ASP223
|
4.4
|
34.4
|
1.0
|
|
CA
|
E:CA1002
|
4.5
|
27.1
|
1.0
|
|
N
|
E:ASP227
|
4.5
|
35.1
|
1.0
|
|
CA
|
E:TYR260
|
4.5
|
31.2
|
1.0
|
|
N
|
E:THR220
|
4.5
|
33.4
|
1.0
|
|
CB
|
E:ILE225
|
4.5
|
32.1
|
1.0
|
|
CB
|
E:ASP219
|
4.6
|
38.0
|
1.0
|
|
N
|
E:PRO226
|
4.6
|
34.2
|
1.0
|
|
CA
|
E:PRO226
|
4.6
|
34.2
|
1.0
|
|
CB
|
E:ASP221
|
4.6
|
33.8
|
1.0
|
|
N
|
E:ASN222
|
4.6
|
42.4
|
1.0
|
|
C
|
E:ASP219
|
4.7
|
38.0
|
1.0
|
|
C
|
E:TYR260
|
4.7
|
31.2
|
1.0
|
|
CB
|
E:ASP223
|
4.8
|
34.4
|
1.0
|
|
CG
|
E:ASP227
|
4.8
|
35.1
|
1.0
|
|
CB
|
E:TYR260
|
4.8
|
31.2
|
1.0
|
|
CA
|
E:ASP227
|
4.8
|
35.1
|
1.0
|
|
CA
|
E:ASP221
|
4.9
|
33.8
|
1.0
|
|
CA
|
E:ASP223
|
5.0
|
34.4
|
1.0
|
|
Calcium binding site 10 out
of 14 in 6klw
Go back to
Calcium Binding Sites List in 6klw
Calcium binding site 10 out
of 14 in the Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Long Stem
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Long Stem within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca1002
b:27.1
occ:1.00
|
O
|
E:GLU262
|
2.4
|
32.0
|
1.0
|
|
OD2
|
E:ASP272
|
2.4
|
27.6
|
1.0
|
|
O
|
E:SER259
|
2.5
|
29.5
|
1.0
|
|
OE1
|
E:GLU230
|
2.5
|
31.5
|
1.0
|
|
OD2
|
E:ASP221
|
2.5
|
33.8
|
1.0
|
|
OD2
|
E:ASP223
|
2.5
|
34.4
|
1.0
|
|
OE2
|
E:GLU230
|
3.0
|
31.5
|
1.0
|
|
CD
|
E:GLU230
|
3.1
|
31.5
|
1.0
|
|
CG
|
E:ASP223
|
3.4
|
34.4
|
1.0
|
|
CG
|
E:ASP272
|
3.5
|
27.6
|
1.0
|
|
C
|
E:GLU262
|
3.5
|
32.0
|
1.0
|
|
C
|
E:SER259
|
3.6
|
29.5
|
1.0
|
|
CG
|
E:ASP221
|
3.7
|
33.8
|
1.0
|
|
OD1
|
E:ASP223
|
3.9
|
34.4
|
1.0
|
|
CA
|
E:SER263
|
4.0
|
29.6
|
1.0
|
|
CB
|
E:ASP272
|
4.1
|
27.6
|
1.0
|
|
OG1
|
E:THR265
|
4.1
|
26.3
|
1.0
|
|
OD1
|
E:ASP221
|
4.2
|
33.8
|
1.0
|
|
N
|
E:SER263
|
4.2
|
29.6
|
1.0
|
|
CB
|
E:SER258
|
4.4
|
29.1
|
1.0
|
|
CA
|
E:TYR260
|
4.4
|
31.2
|
1.0
|
|
C
|
E:SER263
|
4.4
|
29.6
|
1.0
|
|
O
|
E:SER263
|
4.4
|
29.6
|
1.0
|
|
N
|
E:TYR260
|
4.5
|
31.2
|
1.0
|
|
CA
|
E:CA1001
|
4.5
|
27.9
|
1.0
|
|
N
|
E:SER259
|
4.5
|
29.5
|
1.0
|
|
CB
|
E:ASP223
|
4.5
|
34.4
|
1.0
|
|
OD1
|
E:ASP272
|
4.5
|
27.6
|
1.0
|
|
N
|
E:GLU262
|
4.5
|
32.0
|
1.0
|
|
CG
|
E:GLU230
|
4.6
|
31.5
|
1.0
|
|
CA
|
E:SER259
|
4.6
|
29.5
|
1.0
|
|
CA
|
E:GLU262
|
4.6
|
32.0
|
1.0
|
|
C
|
E:TYR260
|
4.7
|
31.2
|
1.0
|
|
CB
|
E:ASP221
|
4.8
|
33.8
|
1.0
|
|
Reference:
T.Yamada,
T.Yoshida,
A.Kawamoto,
K.Mitsuoka,
K.Iwasaki,
H.Tsuge.
Translocational Unfolding in Clostridial Binary Iota Toxin Complex To Be Published.
Page generated: Tue Jul 16 10:32:34 2024
|
