Calcium in PDB 6klx: Pore Structure of Iota Toxin Binding Component (Ib)
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Calcium atom in the Pore Structure of Iota Toxin Binding Component (Ib)
(pdb code 6klx). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 14 binding sites of Calcium where determined in the
Pore Structure of Iota Toxin Binding Component (Ib), PDB code: 6klx:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 14 in 6klx
Go back to
Calcium Binding Sites List in 6klx
Calcium binding site 1 out
of 14 in the Pore Structure of Iota Toxin Binding Component (Ib)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Pore Structure of Iota Toxin Binding Component (Ib) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1001
b:40.4
occ:1.00
|
OE1
|
A:GLU230
|
2.2
|
44.5
|
1.0
|
|
O
|
A:GLU262
|
2.2
|
44.6
|
1.0
|
|
OD2
|
A:ASP221
|
2.3
|
45.0
|
1.0
|
|
OD2
|
A:ASP272
|
2.3
|
40.5
|
1.0
|
|
O
|
A:SER259
|
2.5
|
45.2
|
1.0
|
|
OD2
|
A:ASP223
|
3.1
|
44.0
|
1.0
|
|
CD
|
A:GLU230
|
3.1
|
44.5
|
1.0
|
|
OE2
|
A:GLU230
|
3.3
|
44.5
|
1.0
|
|
C
|
A:GLU262
|
3.3
|
44.6
|
1.0
|
|
CG
|
A:ASP272
|
3.4
|
40.5
|
1.0
|
|
CG
|
A:ASP221
|
3.5
|
45.0
|
1.0
|
|
C
|
A:SER259
|
3.7
|
45.2
|
1.0
|
|
CG
|
A:ASP223
|
3.8
|
44.0
|
1.0
|
|
CA
|
A:SER263
|
3.9
|
41.1
|
1.0
|
|
OD1
|
A:ASP223
|
4.0
|
44.0
|
1.0
|
|
N
|
A:SER263
|
4.0
|
41.1
|
1.0
|
|
OG1
|
A:THR265
|
4.1
|
40.5
|
1.0
|
|
CB
|
A:ASP272
|
4.1
|
40.5
|
1.0
|
|
OD1
|
A:ASP221
|
4.2
|
45.0
|
1.0
|
|
OG
|
A:SER258
|
4.2
|
43.6
|
1.0
|
|
N
|
A:GLU262
|
4.3
|
44.6
|
1.0
|
|
O
|
A:SER263
|
4.3
|
41.1
|
1.0
|
|
C
|
A:SER263
|
4.3
|
41.1
|
1.0
|
|
OD1
|
A:ASP272
|
4.4
|
40.5
|
1.0
|
|
CA
|
A:GLU262
|
4.4
|
44.6
|
1.0
|
|
CA
|
A:TYR260
|
4.5
|
46.5
|
1.0
|
|
CA
|
A:CA1002
|
4.5
|
41.3
|
1.0
|
|
CG
|
A:GLU230
|
4.5
|
44.5
|
1.0
|
|
N
|
A:TYR260
|
4.6
|
46.5
|
1.0
|
|
N
|
A:SER259
|
4.6
|
45.2
|
1.0
|
|
CB
|
A:ASP221
|
4.6
|
45.0
|
1.0
|
|
CA
|
A:SER259
|
4.6
|
45.2
|
1.0
|
|
C
|
A:TYR260
|
4.7
|
46.5
|
1.0
|
|
CB
|
A:SER258
|
4.8
|
43.6
|
1.0
|
|
N
|
A:LEU261
|
5.0
|
46.3
|
1.0
|
|
CB
|
A:ASP223
|
5.0
|
44.0
|
1.0
|
|
Calcium binding site 2 out
of 14 in 6klx
Go back to
Calcium Binding Sites List in 6klx
Calcium binding site 2 out
of 14 in the Pore Structure of Iota Toxin Binding Component (Ib)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Pore Structure of Iota Toxin Binding Component (Ib) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1002
b:41.3
occ:1.00
|
OD1
|
A:ASP221
|
2.2
|
45.0
|
1.0
|
|
OD1
|
A:ASP219
|
2.3
|
48.5
|
1.0
|
|
OE2
|
A:GLU230
|
2.3
|
44.5
|
1.0
|
|
O
|
A:ILE225
|
2.4
|
44.2
|
1.0
|
|
OD1
|
A:ASP223
|
2.5
|
44.0
|
1.0
|
|
CG
|
A:ASP221
|
3.2
|
45.0
|
1.0
|
|
OD2
|
A:ASP221
|
3.5
|
45.0
|
1.0
|
|
CG
|
A:ASP219
|
3.5
|
48.5
|
1.0
|
|
CD
|
A:GLU230
|
3.5
|
44.5
|
1.0
|
|
C
|
A:ILE225
|
3.5
|
44.2
|
1.0
|
|
CG
|
A:ASP223
|
3.6
|
44.0
|
1.0
|
|
OD1
|
A:ASP227
|
3.9
|
47.8
|
1.0
|
|
OD2
|
A:ASP223
|
4.2
|
44.0
|
1.0
|
|
N
|
A:ILE225
|
4.2
|
44.2
|
1.0
|
|
CA
|
A:ILE225
|
4.2
|
44.2
|
1.0
|
|
OD2
|
A:ASP219
|
4.2
|
48.5
|
1.0
|
|
OE1
|
A:GLU230
|
4.3
|
44.5
|
1.0
|
|
O
|
A:PRO226
|
4.3
|
46.1
|
1.0
|
|
N
|
A:ASP221
|
4.3
|
45.0
|
1.0
|
|
CB
|
A:ILE225
|
4.3
|
44.2
|
1.0
|
|
C
|
A:PRO226
|
4.3
|
46.1
|
1.0
|
|
N
|
A:THR220
|
4.4
|
46.2
|
1.0
|
|
CA
|
A:ASP219
|
4.4
|
48.5
|
1.0
|
|
N
|
A:ASP223
|
4.4
|
44.0
|
1.0
|
|
CG
|
A:GLU230
|
4.5
|
44.5
|
1.0
|
|
CA
|
A:CA1001
|
4.5
|
40.4
|
1.0
|
|
O
|
A:TYR260
|
4.5
|
46.5
|
1.0
|
|
CB
|
A:ASP219
|
4.5
|
48.5
|
1.0
|
|
N
|
A:PRO226
|
4.6
|
46.1
|
1.0
|
|
CB
|
A:ASP221
|
4.6
|
45.0
|
1.0
|
|
N
|
A:ASN222
|
4.7
|
46.1
|
1.0
|
|
N
|
A:ASP227
|
4.7
|
47.8
|
1.0
|
|
C
|
A:ASP219
|
4.7
|
48.5
|
1.0
|
|
CA
|
A:PRO226
|
4.7
|
46.1
|
1.0
|
|
CB
|
A:ASP223
|
4.8
|
44.0
|
1.0
|
|
CA
|
A:ASP221
|
4.8
|
45.0
|
1.0
|
|
CA
|
A:TYR260
|
5.0
|
46.5
|
1.0
|
|
C
|
A:ASP221
|
5.0
|
45.0
|
1.0
|
|
CA
|
A:ASP223
|
5.0
|
44.0
|
1.0
|
|
Calcium binding site 3 out
of 14 in 6klx
Go back to
Calcium Binding Sites List in 6klx
Calcium binding site 3 out
of 14 in the Pore Structure of Iota Toxin Binding Component (Ib)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Pore Structure of Iota Toxin Binding Component (Ib) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1001
b:40.5
occ:1.00
|
OE1
|
B:GLU230
|
2.2
|
44.7
|
1.0
|
|
O
|
B:GLU262
|
2.2
|
44.3
|
1.0
|
|
OD2
|
B:ASP221
|
2.3
|
45.0
|
1.0
|
|
OD2
|
B:ASP272
|
2.3
|
39.8
|
1.0
|
|
O
|
B:SER259
|
2.3
|
44.3
|
1.0
|
|
CD
|
B:GLU230
|
2.9
|
44.7
|
1.0
|
|
OE2
|
B:GLU230
|
3.0
|
44.7
|
1.0
|
|
OD2
|
B:ASP223
|
3.0
|
43.8
|
1.0
|
|
C
|
B:GLU262
|
3.3
|
44.3
|
1.0
|
|
CG
|
B:ASP221
|
3.5
|
45.0
|
1.0
|
|
CG
|
B:ASP272
|
3.5
|
39.8
|
1.0
|
|
C
|
B:SER259
|
3.6
|
44.3
|
1.0
|
|
CG
|
B:ASP223
|
3.8
|
43.8
|
1.0
|
|
OD1
|
B:ASP223
|
4.0
|
43.8
|
1.0
|
|
CA
|
B:SER263
|
4.0
|
40.5
|
1.0
|
|
OD1
|
B:ASP221
|
4.1
|
45.0
|
1.0
|
|
N
|
B:SER263
|
4.1
|
40.5
|
1.0
|
|
CB
|
B:ASP272
|
4.2
|
39.8
|
1.0
|
|
N
|
B:GLU262
|
4.2
|
44.3
|
1.0
|
|
CA
|
B:TYR260
|
4.2
|
46.3
|
1.0
|
|
OG1
|
B:THR265
|
4.3
|
39.9
|
1.0
|
|
CA
|
B:CA1002
|
4.3
|
40.4
|
1.0
|
|
CG
|
B:GLU230
|
4.4
|
44.7
|
1.0
|
|
OG
|
B:SER258
|
4.4
|
43.5
|
1.0
|
|
N
|
B:TYR260
|
4.4
|
46.3
|
1.0
|
|
CA
|
B:GLU262
|
4.4
|
44.3
|
1.0
|
|
OD1
|
B:ASP272
|
4.4
|
39.8
|
1.0
|
|
N
|
B:SER259
|
4.5
|
44.3
|
1.0
|
|
C
|
B:TYR260
|
4.5
|
46.3
|
1.0
|
|
C
|
B:SER263
|
4.5
|
40.5
|
1.0
|
|
CA
|
B:SER259
|
4.6
|
44.3
|
1.0
|
|
CB
|
B:ASP221
|
4.6
|
45.0
|
1.0
|
|
O
|
B:SER263
|
4.6
|
40.5
|
1.0
|
|
N
|
B:LEU261
|
4.8
|
46.2
|
1.0
|
|
CB
|
B:SER258
|
4.8
|
43.5
|
1.0
|
|
O
|
B:TYR260
|
5.0
|
46.3
|
1.0
|
|
CB
|
B:GLU262
|
5.0
|
44.3
|
1.0
|
|
Calcium binding site 4 out
of 14 in 6klx
Go back to
Calcium Binding Sites List in 6klx
Calcium binding site 4 out
of 14 in the Pore Structure of Iota Toxin Binding Component (Ib)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Pore Structure of Iota Toxin Binding Component (Ib) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1002
b:40.4
occ:1.00
|
OD1
|
B:ASP221
|
2.3
|
45.0
|
1.0
|
|
OE2
|
B:GLU230
|
2.3
|
44.7
|
1.0
|
|
OD1
|
B:ASP219
|
2.3
|
48.0
|
1.0
|
|
O
|
B:ILE225
|
2.3
|
44.0
|
1.0
|
|
OD1
|
B:ASP223
|
2.6
|
43.8
|
1.0
|
|
CG
|
B:ASP221
|
3.2
|
45.0
|
1.0
|
|
CD
|
B:GLU230
|
3.5
|
44.7
|
1.0
|
|
CG
|
B:ASP219
|
3.5
|
48.0
|
1.0
|
|
OD2
|
B:ASP221
|
3.5
|
45.0
|
1.0
|
|
C
|
B:ILE225
|
3.5
|
44.0
|
1.0
|
|
CG
|
B:ASP223
|
3.7
|
43.8
|
1.0
|
|
OD1
|
B:ASP227
|
3.8
|
47.7
|
1.0
|
|
OD2
|
B:ASP223
|
4.2
|
43.8
|
1.0
|
|
OD2
|
B:ASP219
|
4.3
|
48.0
|
1.0
|
|
N
|
B:ILE225
|
4.3
|
44.0
|
1.0
|
|
C
|
B:PRO226
|
4.3
|
46.1
|
1.0
|
|
O
|
B:PRO226
|
4.3
|
46.1
|
1.0
|
|
CA
|
B:ILE225
|
4.3
|
44.0
|
1.0
|
|
N
|
B:ASP221
|
4.3
|
45.0
|
1.0
|
|
N
|
B:THR220
|
4.3
|
46.0
|
1.0
|
|
OE1
|
B:GLU230
|
4.3
|
44.7
|
1.0
|
|
CA
|
B:CA1001
|
4.3
|
40.5
|
1.0
|
|
CA
|
B:ASP219
|
4.4
|
48.0
|
1.0
|
|
CG
|
B:GLU230
|
4.4
|
44.7
|
1.0
|
|
CB
|
B:ILE225
|
4.4
|
44.0
|
1.0
|
|
N
|
B:ASP223
|
4.5
|
43.8
|
1.0
|
|
CB
|
B:ASP219
|
4.5
|
48.0
|
1.0
|
|
O
|
B:TYR260
|
4.5
|
46.3
|
1.0
|
|
N
|
B:PRO226
|
4.5
|
46.1
|
1.0
|
|
N
|
B:ASP227
|
4.6
|
47.7
|
1.0
|
|
CB
|
B:ASP221
|
4.6
|
45.0
|
1.0
|
|
N
|
B:ASN222
|
4.6
|
46.2
|
1.0
|
|
CA
|
B:PRO226
|
4.6
|
46.1
|
1.0
|
|
C
|
B:ASP219
|
4.6
|
48.0
|
1.0
|
|
CA
|
B:ASP221
|
4.9
|
45.0
|
1.0
|
|
CA
|
B:TYR260
|
4.9
|
46.3
|
1.0
|
|
CA
|
B:ASP227
|
4.9
|
47.7
|
1.0
|
|
CB
|
B:ASP223
|
4.9
|
43.8
|
1.0
|
|
C
|
B:ASP221
|
5.0
|
45.0
|
1.0
|
|
Calcium binding site 5 out
of 14 in 6klx
Go back to
Calcium Binding Sites List in 6klx
Calcium binding site 5 out
of 14 in the Pore Structure of Iota Toxin Binding Component (Ib)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Pore Structure of Iota Toxin Binding Component (Ib) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca1001
b:40.6
occ:1.00
|
O
|
C:GLU262
|
2.3
|
44.4
|
1.0
|
|
OD2
|
C:ASP221
|
2.3
|
45.0
|
1.0
|
|
OE1
|
C:GLU230
|
2.3
|
44.8
|
1.0
|
|
OD2
|
C:ASP272
|
2.3
|
40.2
|
1.0
|
|
O
|
C:SER259
|
2.4
|
44.2
|
1.0
|
|
OE2
|
C:GLU230
|
2.8
|
44.8
|
1.0
|
|
CD
|
C:GLU230
|
2.9
|
44.8
|
1.0
|
|
OD2
|
C:ASP223
|
2.9
|
43.9
|
1.0
|
|
CG
|
C:ASP272
|
3.5
|
40.2
|
1.0
|
|
C
|
C:GLU262
|
3.5
|
44.4
|
1.0
|
|
CG
|
C:ASP221
|
3.5
|
45.0
|
1.0
|
|
C
|
C:SER259
|
3.6
|
44.2
|
1.0
|
|
CG
|
C:ASP223
|
3.8
|
43.9
|
1.0
|
|
OD1
|
C:ASP223
|
4.1
|
43.9
|
1.0
|
|
OG
|
C:SER258
|
4.1
|
43.6
|
1.0
|
|
CA
|
C:SER263
|
4.1
|
41.0
|
1.0
|
|
CB
|
C:ASP272
|
4.1
|
40.2
|
1.0
|
|
OG1
|
C:THR265
|
4.1
|
40.2
|
1.0
|
|
OD1
|
C:ASP221
|
4.2
|
45.0
|
1.0
|
|
N
|
C:SER263
|
4.2
|
41.0
|
1.0
|
|
CA
|
C:CA1002
|
4.3
|
40.3
|
1.0
|
|
CA
|
C:TYR260
|
4.3
|
46.2
|
1.0
|
|
CG
|
C:GLU230
|
4.4
|
44.8
|
1.0
|
|
N
|
C:GLU262
|
4.4
|
44.4
|
1.0
|
|
OD1
|
C:ASP272
|
4.4
|
40.2
|
1.0
|
|
CB
|
C:ASP221
|
4.4
|
45.0
|
1.0
|
|
N
|
C:TYR260
|
4.5
|
46.2
|
1.0
|
|
O
|
C:SER263
|
4.5
|
41.0
|
1.0
|
|
C
|
C:SER263
|
4.5
|
41.0
|
1.0
|
|
CA
|
C:GLU262
|
4.5
|
44.4
|
1.0
|
|
N
|
C:SER259
|
4.5
|
44.2
|
1.0
|
|
CA
|
C:SER259
|
4.6
|
44.2
|
1.0
|
|
C
|
C:TYR260
|
4.7
|
46.2
|
1.0
|
|
CB
|
C:SER258
|
4.8
|
43.6
|
1.0
|
|
N
|
C:LEU261
|
4.9
|
45.8
|
1.0
|
|
CB
|
C:SER259
|
5.0
|
44.2
|
1.0
|
|
Calcium binding site 6 out
of 14 in 6klx
Go back to
Calcium Binding Sites List in 6klx
Calcium binding site 6 out
of 14 in the Pore Structure of Iota Toxin Binding Component (Ib)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Pore Structure of Iota Toxin Binding Component (Ib) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca1002
b:40.3
occ:1.00
|
OD1
|
C:ASP221
|
2.2
|
45.0
|
1.0
|
|
O
|
C:ILE225
|
2.3
|
44.4
|
1.0
|
|
OD1
|
C:ASP219
|
2.3
|
48.2
|
1.0
|
|
OE2
|
C:GLU230
|
2.3
|
44.8
|
1.0
|
|
OD1
|
C:ASP223
|
2.6
|
43.9
|
1.0
|
|
CG
|
C:ASP221
|
3.0
|
45.0
|
1.0
|
|
OD2
|
C:ASP221
|
3.2
|
45.0
|
1.0
|
|
CD
|
C:GLU230
|
3.5
|
44.8
|
1.0
|
|
C
|
C:ILE225
|
3.5
|
44.4
|
1.0
|
|
CG
|
C:ASP219
|
3.5
|
48.2
|
1.0
|
|
CG
|
C:ASP223
|
3.7
|
43.9
|
1.0
|
|
OD1
|
C:ASP227
|
3.8
|
47.8
|
1.0
|
|
OD2
|
C:ASP223
|
4.1
|
43.9
|
1.0
|
|
O
|
C:PRO226
|
4.2
|
46.5
|
1.0
|
|
CG
|
C:GLU230
|
4.2
|
44.8
|
1.0
|
|
C
|
C:PRO226
|
4.2
|
46.5
|
1.0
|
|
OD2
|
C:ASP219
|
4.2
|
48.2
|
1.0
|
|
CA
|
C:ILE225
|
4.2
|
44.4
|
1.0
|
|
CB
|
C:ILE225
|
4.3
|
44.4
|
1.0
|
|
N
|
C:ILE225
|
4.3
|
44.4
|
1.0
|
|
CA
|
C:CA1001
|
4.3
|
40.6
|
1.0
|
|
OE1
|
C:GLU230
|
4.3
|
44.8
|
1.0
|
|
N
|
C:ASP221
|
4.4
|
45.0
|
1.0
|
|
CB
|
C:ASP221
|
4.4
|
45.0
|
1.0
|
|
CA
|
C:ASP219
|
4.5
|
48.2
|
1.0
|
|
N
|
C:THR220
|
4.5
|
45.9
|
1.0
|
|
N
|
C:PRO226
|
4.5
|
46.5
|
1.0
|
|
N
|
C:ASP223
|
4.5
|
43.9
|
1.0
|
|
CB
|
C:ASP219
|
4.5
|
48.2
|
1.0
|
|
N
|
C:ASP227
|
4.6
|
47.8
|
1.0
|
|
O
|
C:TYR260
|
4.6
|
46.2
|
1.0
|
|
CA
|
C:PRO226
|
4.6
|
46.5
|
1.0
|
|
N
|
C:ASN222
|
4.7
|
46.4
|
1.0
|
|
C
|
C:ASP219
|
4.8
|
48.2
|
1.0
|
|
CA
|
C:ASP221
|
4.8
|
45.0
|
1.0
|
|
CA
|
C:TYR260
|
4.9
|
46.2
|
1.0
|
|
CA
|
C:ASP227
|
4.9
|
47.8
|
1.0
|
|
CB
|
C:ASP223
|
4.9
|
43.9
|
1.0
|
|
Calcium binding site 7 out
of 14 in 6klx
Go back to
Calcium Binding Sites List in 6klx
Calcium binding site 7 out
of 14 in the Pore Structure of Iota Toxin Binding Component (Ib)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Pore Structure of Iota Toxin Binding Component (Ib) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca1001
b:42.0
occ:1.00
|
O
|
D:GLU262
|
2.2
|
44.8
|
1.0
|
|
OD2
|
D:ASP221
|
2.3
|
44.4
|
1.0
|
|
OE1
|
D:GLU230
|
2.3
|
44.4
|
1.0
|
|
OD2
|
D:ASP272
|
2.3
|
40.1
|
1.0
|
|
O
|
D:SER259
|
2.3
|
44.7
|
1.0
|
|
OE2
|
D:GLU230
|
2.7
|
44.4
|
1.0
|
|
CD
|
D:GLU230
|
2.8
|
44.4
|
1.0
|
|
OD2
|
D:ASP223
|
2.9
|
43.4
|
1.0
|
|
C
|
D:GLU262
|
3.4
|
44.8
|
1.0
|
|
CG
|
D:ASP221
|
3.5
|
44.4
|
1.0
|
|
CG
|
D:ASP272
|
3.5
|
40.1
|
1.0
|
|
C
|
D:SER259
|
3.5
|
44.7
|
1.0
|
|
CG
|
D:ASP223
|
3.8
|
43.4
|
1.0
|
|
OD1
|
D:ASP221
|
4.1
|
44.4
|
1.0
|
|
N
|
D:GLU262
|
4.1
|
44.8
|
1.0
|
|
CA
|
D:SER263
|
4.1
|
40.9
|
1.0
|
|
OG1
|
D:THR265
|
4.2
|
40.3
|
1.0
|
|
OD1
|
D:ASP223
|
4.2
|
43.4
|
1.0
|
|
N
|
D:SER263
|
4.2
|
40.9
|
1.0
|
|
OG
|
D:SER258
|
4.2
|
43.5
|
1.0
|
|
CA
|
D:TYR260
|
4.2
|
46.2
|
1.0
|
|
CG
|
D:GLU230
|
4.3
|
44.4
|
1.0
|
|
CA
|
D:CA1002
|
4.3
|
40.0
|
1.0
|
|
CB
|
D:ASP272
|
4.3
|
40.1
|
1.0
|
|
CA
|
D:GLU262
|
4.3
|
44.8
|
1.0
|
|
N
|
D:TYR260
|
4.4
|
46.2
|
1.0
|
|
OD1
|
D:ASP272
|
4.4
|
40.1
|
1.0
|
|
C
|
D:TYR260
|
4.5
|
46.2
|
1.0
|
|
N
|
D:SER259
|
4.5
|
44.7
|
1.0
|
|
CA
|
D:SER259
|
4.6
|
44.7
|
1.0
|
|
CB
|
D:ASP221
|
4.6
|
44.4
|
1.0
|
|
C
|
D:SER263
|
4.7
|
40.9
|
1.0
|
|
CB
|
D:SER258
|
4.7
|
43.5
|
1.0
|
|
O
|
D:SER263
|
4.7
|
40.9
|
1.0
|
|
N
|
D:LEU261
|
4.8
|
46.1
|
1.0
|
|
O
|
D:TYR260
|
4.9
|
46.2
|
1.0
|
|
CB
|
D:GLU262
|
4.9
|
44.8
|
1.0
|
|
CB
|
D:GLU230
|
4.9
|
44.4
|
1.0
|
|
C
|
D:SER258
|
5.0
|
43.5
|
1.0
|
|
CB
|
D:SER259
|
5.0
|
44.7
|
1.0
|
|
Calcium binding site 8 out
of 14 in 6klx
Go back to
Calcium Binding Sites List in 6klx
Calcium binding site 8 out
of 14 in the Pore Structure of Iota Toxin Binding Component (Ib)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Pore Structure of Iota Toxin Binding Component (Ib) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca1002
b:40.0
occ:1.00
|
OD1
|
D:ASP221
|
2.2
|
44.4
|
1.0
|
|
O
|
D:ILE225
|
2.3
|
43.5
|
1.0
|
|
OD1
|
D:ASP219
|
2.3
|
47.2
|
1.0
|
|
OE2
|
D:GLU230
|
2.3
|
44.4
|
1.0
|
|
OD1
|
D:ASP223
|
2.6
|
43.4
|
1.0
|
|
CG
|
D:ASP221
|
3.2
|
44.4
|
1.0
|
|
OD2
|
D:ASP221
|
3.5
|
44.4
|
1.0
|
|
CD
|
D:GLU230
|
3.5
|
44.4
|
1.0
|
|
C
|
D:ILE225
|
3.5
|
43.5
|
1.0
|
|
CG
|
D:ASP219
|
3.6
|
47.2
|
1.0
|
|
CG
|
D:ASP223
|
3.6
|
43.4
|
1.0
|
|
OD1
|
D:ASP227
|
3.8
|
47.4
|
1.0
|
|
OD2
|
D:ASP223
|
4.0
|
43.4
|
1.0
|
|
CG
|
D:GLU230
|
4.2
|
44.4
|
1.0
|
|
C
|
D:PRO226
|
4.2
|
45.7
|
1.0
|
|
O
|
D:PRO226
|
4.2
|
45.7
|
1.0
|
|
CA
|
D:CA1001
|
4.3
|
42.0
|
1.0
|
|
CA
|
D:ILE225
|
4.3
|
43.5
|
1.0
|
|
N
|
D:ILE225
|
4.3
|
43.5
|
1.0
|
|
OD2
|
D:ASP219
|
4.3
|
47.2
|
1.0
|
|
O
|
D:TYR260
|
4.4
|
46.2
|
1.0
|
|
N
|
D:ASP221
|
4.4
|
44.4
|
1.0
|
|
CB
|
D:ILE225
|
4.4
|
43.5
|
1.0
|
|
CA
|
D:ASP219
|
4.4
|
47.2
|
1.0
|
|
N
|
D:THR220
|
4.4
|
45.6
|
1.0
|
|
OE1
|
D:GLU230
|
4.4
|
44.4
|
1.0
|
|
N
|
D:PRO226
|
4.5
|
45.7
|
1.0
|
|
N
|
D:ASP227
|
4.5
|
47.4
|
1.0
|
|
CB
|
D:ASP219
|
4.5
|
47.2
|
1.0
|
|
CB
|
D:ASP221
|
4.6
|
44.4
|
1.0
|
|
CA
|
D:PRO226
|
4.6
|
45.7
|
1.0
|
|
N
|
D:ASP223
|
4.6
|
43.4
|
1.0
|
|
C
|
D:ASP219
|
4.7
|
47.2
|
1.0
|
|
N
|
D:ASN222
|
4.8
|
46.0
|
1.0
|
|
CA
|
D:ASP227
|
4.8
|
47.4
|
1.0
|
|
CA
|
D:TYR260
|
4.9
|
46.2
|
1.0
|
|
CA
|
D:ASP221
|
4.9
|
44.4
|
1.0
|
|
CB
|
D:ASP223
|
4.9
|
43.4
|
1.0
|
|
C
|
D:TYR260
|
4.9
|
46.2
|
1.0
|
|
Calcium binding site 9 out
of 14 in 6klx
Go back to
Calcium Binding Sites List in 6klx
Calcium binding site 9 out
of 14 in the Pore Structure of Iota Toxin Binding Component (Ib)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Pore Structure of Iota Toxin Binding Component (Ib) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca1001
b:40.6
occ:1.00
|
OE1
|
E:GLU230
|
2.2
|
44.4
|
1.0
|
|
O
|
E:GLU262
|
2.2
|
44.7
|
1.0
|
|
OD2
|
E:ASP272
|
2.3
|
40.4
|
1.0
|
|
OD2
|
E:ASP221
|
2.3
|
45.3
|
1.0
|
|
OD2
|
E:ASP223
|
2.5
|
44.4
|
1.0
|
|
O
|
E:SER259
|
2.6
|
44.7
|
1.0
|
|
CD
|
E:GLU230
|
3.0
|
44.4
|
1.0
|
|
OE2
|
E:GLU230
|
3.2
|
44.4
|
1.0
|
|
CG
|
E:ASP272
|
3.4
|
40.4
|
1.0
|
|
C
|
E:GLU262
|
3.4
|
44.7
|
1.0
|
|
CG
|
E:ASP221
|
3.5
|
45.3
|
1.0
|
|
CG
|
E:ASP223
|
3.6
|
44.4
|
1.0
|
|
C
|
E:SER259
|
3.8
|
44.7
|
1.0
|
|
CA
|
E:SER263
|
4.0
|
41.0
|
1.0
|
|
CB
|
E:ASP272
|
4.0
|
40.4
|
1.0
|
|
OG
|
E:SER258
|
4.1
|
43.4
|
1.0
|
|
OD1
|
E:ASP223
|
4.1
|
44.4
|
1.0
|
|
OG1
|
E:THR265
|
4.1
|
40.5
|
1.0
|
|
N
|
E:SER263
|
4.2
|
41.0
|
1.0
|
|
OD1
|
E:ASP221
|
4.2
|
45.3
|
1.0
|
|
O
|
E:SER263
|
4.3
|
41.0
|
1.0
|
|
CA
|
E:TYR260
|
4.4
|
46.3
|
1.0
|
|
CG
|
E:GLU230
|
4.4
|
44.4
|
1.0
|
|
OD1
|
E:ASP272
|
4.4
|
40.4
|
1.0
|
|
CA
|
E:CA1002
|
4.4
|
40.7
|
1.0
|
|
N
|
E:GLU262
|
4.4
|
44.7
|
1.0
|
|
C
|
E:SER263
|
4.4
|
41.0
|
1.0
|
|
CA
|
E:GLU262
|
4.5
|
44.7
|
1.0
|
|
N
|
E:TYR260
|
4.5
|
46.3
|
1.0
|
|
CB
|
E:ASP221
|
4.6
|
45.3
|
1.0
|
|
C
|
E:TYR260
|
4.7
|
46.3
|
1.0
|
|
N
|
E:SER259
|
4.7
|
44.7
|
1.0
|
|
CB
|
E:ASP223
|
4.8
|
44.4
|
1.0
|
|
CB
|
E:SER258
|
4.8
|
43.4
|
1.0
|
|
CA
|
E:SER259
|
4.8
|
44.7
|
1.0
|
|
Calcium binding site 10 out
of 14 in 6klx
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Calcium Binding Sites List in 6klx
Calcium binding site 10 out
of 14 in the Pore Structure of Iota Toxin Binding Component (Ib)
 Mono view
 Stereo pair view
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A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Pore Structure of Iota Toxin Binding Component (Ib) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca1002
b:40.7
occ:1.00
|
OD1
|
E:ASP221
|
2.2
|
45.3
|
1.0
|
|
OE2
|
E:GLU230
|
2.3
|
44.4
|
1.0
|
|
OD1
|
E:ASP219
|
2.3
|
48.6
|
1.0
|
|
O
|
E:ILE225
|
2.3
|
44.0
|
1.0
|
|
OD1
|
E:ASP223
|
2.5
|
44.4
|
1.0
|
|
CG
|
E:ASP221
|
3.2
|
45.3
|
1.0
|
|
OD2
|
E:ASP221
|
3.4
|
45.3
|
1.0
|
|
CD
|
E:GLU230
|
3.4
|
44.4
|
1.0
|
|
CG
|
E:ASP219
|
3.5
|
48.6
|
1.0
|
|
CG
|
E:ASP223
|
3.5
|
44.4
|
1.0
|
|
C
|
E:ILE225
|
3.5
|
44.0
|
1.0
|
|
OD1
|
E:ASP227
|
3.8
|
48.0
|
1.0
|
|
OD2
|
E:ASP223
|
3.9
|
44.4
|
1.0
|
|
OE1
|
E:GLU230
|
4.1
|
44.4
|
1.0
|
|
O
|
E:PRO226
|
4.3
|
46.2
|
1.0
|
|
N
|
E:ILE225
|
4.3
|
44.0
|
1.0
|
|
C
|
E:PRO226
|
4.3
|
46.2
|
1.0
|
|
CA
|
E:ILE225
|
4.3
|
44.0
|
1.0
|
|
N
|
E:ASP221
|
4.3
|
45.3
|
1.0
|
|
OD2
|
E:ASP219
|
4.3
|
48.6
|
1.0
|
|
N
|
E:THR220
|
4.3
|
46.9
|
1.0
|
|
CA
|
E:ASP219
|
4.3
|
48.6
|
1.0
|
|
O
|
E:TYR260
|
4.4
|
46.3
|
1.0
|
|
CA
|
E:CA1001
|
4.4
|
40.6
|
1.0
|
|
CB
|
E:ILE225
|
4.4
|
44.0
|
1.0
|
|
CG
|
E:GLU230
|
4.4
|
44.4
|
1.0
|
|
CB
|
E:ASP219
|
4.5
|
48.6
|
1.0
|
|
N
|
E:ASP223
|
4.5
|
44.4
|
1.0
|
|
N
|
E:PRO226
|
4.5
|
46.2
|
1.0
|
|
CB
|
E:ASP221
|
4.5
|
45.3
|
1.0
|
|
N
|
E:ASP227
|
4.6
|
48.0
|
1.0
|
|
C
|
E:ASP219
|
4.6
|
48.6
|
1.0
|
|
CA
|
E:PRO226
|
4.6
|
46.2
|
1.0
|
|
N
|
E:ASN222
|
4.7
|
46.9
|
1.0
|
|
CB
|
E:ASP223
|
4.8
|
44.4
|
1.0
|
|
CA
|
E:ASP221
|
4.8
|
45.3
|
1.0
|
|
CA
|
E:TYR260
|
4.9
|
46.3
|
1.0
|
|
CA
|
E:ASP227
|
4.9
|
48.0
|
1.0
|
|
C
|
E:TYR260
|
5.0
|
46.3
|
1.0
|
|
Reference:
T.Yamada,
T.Yoshida,
A.Kawamoto,
K.Mitsuoka,
K.Iwasaki,
H.Tsuge.
Translocational Unfolding in Clostridial Binary Iota Toxin Complex To Be Published.
Page generated: Sat Dec 12 06:18:22 2020
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