Calcium in PDB 6kma: Crystal Structure of Suca with Glycolaldehyde-1-13C From Vibrio Vulnificus

All present enzymatic activity of Crystal Structure of Suca with Glycolaldehyde-1-13C From Vibrio Vulnificus:
1.2.4.2;

The structure of Crystal Structure of Suca with Glycolaldehyde-1-13C From Vibrio Vulnificus, PDB code: 6kma was solved by P.W.Seo, J.S.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.65 / 2.28
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	76.820, 84.559, 145.218, 79.51, 88.47, 89.92
R / Rfree (%)	20 / 23

The structure of Crystal Structure of Suca with Glycolaldehyde-1-13C From Vibrio Vulnificus also contains other interesting chemical elements:

Magnesium

(Mg)

4 atoms

The binding sites of Calcium atom in the Crystal Structure of Suca with Glycolaldehyde-1-13C From Vibrio Vulnificus (pdb code 6kma). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Suca with Glycolaldehyde-1-13C From Vibrio Vulnificus, PDB code: 6kma:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Suca with Glycolaldehyde-1-13C From Vibrio Vulnificus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Suca with Glycolaldehyde-1-13C From Vibrio Vulnificus within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1002 b:41.1 occ:1.00 OE1 A:GLU665 2.4 30.7 1.0 O B:HOH1164 2.4 38.8 1.0 O A:HOH1164 2.4 32.1 1.0 O B:HOH1138 2.4 27.3 1.0 OE1 B:GLU665 2.4 33.5 1.0 O B:HOH1202 2.4 32.2 1.0 CD A:GLU665 3.3 30.9 1.0 CD B:GLU665 3.4 32.1 1.0 OE2 A:GLU665 3.7 34.1 1.0 OE2 B:GLU665 3.8 33.5 1.0 O A:HOH1285 4.3 33.5 1.0 O B:HOH1285 4.3 23.5 1.0 O A:GLY695 4.4 21.6 1.0 O B:GLY695 4.4 18.3 1.0 O A:HOH1325 4.5 25.6 1.0 CG A:GLU665 4.5 28.8 1.0 CB A:GLU665 4.5 25.5 1.0 CG B:GLU665 4.6 29.2 1.0 CB B:GLU665 4.6 28.4 1.0 OE2 B:GLU371 4.7 25.5 1.0 OE2 A:GLU371 4.7 21.5 1.0 O B:HOH1309 5.0 33.4 1.0 O A:HOH1261 5.0 18.2 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Suca with Glycolaldehyde-1-13C From Vibrio Vulnificus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Suca with Glycolaldehyde-1-13C From Vibrio Vulnificus within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca1002 b:45.0 occ:1.00 O D:HOH1124 2.4 38.9 1.0 O C:HOH1131 2.4 36.0 1.0 O C:HOH1180 2.4 26.7 1.0 OE1 D:GLU665 2.4 35.8 1.0 O C:HOH1191 2.4 25.9 1.0 OE1 C:GLU665 2.4 29.9 1.0 CD C:GLU665 3.4 29.8 1.0 CD D:GLU665 3.4 35.5 1.0 OE2 C:GLU665 3.8 31.9 1.0 O C:HOH1334 3.8 32.4 1.0 O D:HOH1102 3.9 36.1 1.0 OE2 D:GLU665 3.9 38.1 1.0 O C:HOH1347 4.2 30.4 1.0 O D:GLY695 4.3 23.3 1.0 O D:HOH1237 4.4 26.8 1.0 CB D:GLU665 4.5 32.7 1.0 OE2 D:GLU371 4.5 32.1 1.0 CG D:GLU665 4.5 33.9 1.0 O C:GLY695 4.6 24.3 1.0 CG C:GLU665 4.6 28.4 1.0 CB C:GLU665 4.7 27.1 1.0 OE2 C:GLU371 4.8 23.3 1.0 O D:HOH1223 4.9 18.6 1.0

P.W.Seo, J.S.Kim. Crystal Structure of Suca with Glycolaldehyde-1-13C From Vibrio Vulnificus at 2.28 Angstroms Resolution. To Be Published.