Atomistry » Calcium » PDB 6keb-6kzb » 6kmk
Atomistry »
  Calcium »
    PDB 6keb-6kzb »
      6kmk »

Calcium in PDB 6kmk: Crystal Structure of Hydrogen Peroxide Bound Bovine Lactoperoxidase at 2.3 A Resolution

Enzymatic activity of Crystal Structure of Hydrogen Peroxide Bound Bovine Lactoperoxidase at 2.3 A Resolution

All present enzymatic activity of Crystal Structure of Hydrogen Peroxide Bound Bovine Lactoperoxidase at 2.3 A Resolution:
1.11.1.7;

Protein crystallography data

The structure of Crystal Structure of Hydrogen Peroxide Bound Bovine Lactoperoxidase at 2.3 A Resolution, PDB code: 6kmk was solved by P.K.Singh, H.V.Sirohi, A.Bhusan, P.Kaur, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 54.46 / 2.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 53.828, 80.420, 75.823, 90.00, 102.58, 90.00
R / Rfree (%) 24.5 / 29.5

Other elements in 6kmk:

The structure of Crystal Structure of Hydrogen Peroxide Bound Bovine Lactoperoxidase at 2.3 A Resolution also contains other interesting chemical elements:

Iodine (I) 15 atoms
Iron (Fe) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Hydrogen Peroxide Bound Bovine Lactoperoxidase at 2.3 A Resolution (pdb code 6kmk). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Hydrogen Peroxide Bound Bovine Lactoperoxidase at 2.3 A Resolution, PDB code: 6kmk:

Calcium binding site 1 out of 1 in 6kmk

Go back to Calcium Binding Sites List in 6kmk
Calcium binding site 1 out of 1 in the Crystal Structure of Hydrogen Peroxide Bound Bovine Lactoperoxidase at 2.3 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Hydrogen Peroxide Bound Bovine Lactoperoxidase at 2.3 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca602

b:29.3
occ:1.00
 O A:ASP110 2.3 24.1 1.0
OD1 A:ASP110 2.3 31.3 1.0
O A:PHE186 2.3 25.5 1.0
OG A:SER190 2.3 26.1 1.0
OD1 A:ASP188 2.3 30.9 1.0
O A:THR184 2.4 26.5 1.0
OG1 A:THR184 2.4 28.8 1.0
CG A:ASP188 3.3 31.2 1.0
C A:ASP110 3.4 28.3 1.0
C A:THR184 3.4 27.0 1.0
CB A:SER190 3.4 28.5 1.0
CG A:ASP110 3.5 31.3 1.0
C A:PHE186 3.6 27.2 1.0
OD2 A:ASP188 3.6 31.4 1.0
CB A:THR184 3.6 27.0 1.0
CA A:THR184 3.8 27.0 1.0
N A:THR184 3.9 28.3 1.0
CA A:ASP110 4.0 27.2 1.0
N A:ASP188 4.1 30.8 1.0
N A:SER190 4.2 28.7 1.0
CB A:ASP110 4.3 28.9 1.0
N A:PHE186 4.3 25.6 1.0
N A:LEU111 4.4 26.2 1.0
CA A:SER190 4.4 27.4 1.0
OD2 A:ASP110 4.4 30.1 1.0
CB A:ASP188 4.5 31.3 1.0
CA A:PHE186 4.5 25.8 1.0
O A:HOH777 4.5 18.2 1.0
N A:SER185 4.5 26.8 1.0
N A:LEU187 4.5 26.2 1.0
CA A:LEU111 4.6 24.8 1.0
CA A:LEU187 4.6 28.6 1.0
C A:SER185 4.6 26.6 1.0
CA A:ASP188 4.7 31.1 1.0
CG2 A:THR184 4.8 27.5 1.0
C A:LEU187 4.9 28.5 1.0
C A:ASP188 4.9 28.1 1.0
CD2 A:LEU111 4.9 23.8 1.0
N A:ALA189 5.0 27.4 1.0
C A:VAL183 5.0 26.6 1.0

Reference:

P.K.Singh, H.V.Sirohi, A.Bhushan, P.Kaur, S.Sharma, T.P.Singh. Crystal Structure of Hydrogen Peroxide Bound Bovine Lactoperoxidase at 2.3 A Resolution To Be Published.
Page generated: Tue Jul 16 10:34:29 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy