Calcium in PDB 6kth: Crystal Structure of Juvenile Hormone Diol Kinase Jhdk-L2 From Silkworm, Bombyx Mori

The structure of Crystal Structure of Juvenile Hormone Diol Kinase Jhdk-L2 From Silkworm, Bombyx Mori, PDB code: 6kth was solved by Y.S.Zhang, H.Y.Xu, Z.Wang, L.Zhang, P.Zhao, P.C.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.50 / 1.22
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	47.960, 67.570, 69.470, 90.00, 90.00, 90.00
R / Rfree (%)	18.3 / 20

The binding sites of Calcium atom in the Crystal Structure of Juvenile Hormone Diol Kinase Jhdk-L2 From Silkworm, Bombyx Mori (pdb code 6kth). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Juvenile Hormone Diol Kinase Jhdk-L2 From Silkworm, Bombyx Mori, PDB code: 6kth:

Calcium binding site 1 out of 1 in the Crystal Structure of Juvenile Hormone Diol Kinase Jhdk-L2 From Silkworm, Bombyx Mori


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Juvenile Hormone Diol Kinase Jhdk-L2 From Silkworm, Bombyx Mori within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca201 b:15.1 occ:1.00 OD1 A:ASP19 2.3 15.2 1.0 O A:THR25 2.3 16.2 1.0 OD1 A:ASN21 2.3 16.8 1.0 O A:HOH347 2.3 23.9 1.0 OD2 A:ASP30 2.4 14.4 1.0 OG A:SER23 2.5 18.1 1.0 OD1 A:ASP30 2.6 15.2 1.0 CG A:ASP30 2.9 13.4 1.0 H A:SER23 3.1 17.8 1.0 CG A:ASN21 3.4 19.4 1.0 CG A:ASP19 3.5 15.6 1.0 HA A:ILE26 3.6 13.5 1.0 C A:THR25 3.6 14.3 1.0 H A:THR25 3.6 16.2 1.0 H A:ASN21 3.6 15.9 1.0 HB3 A:SER23 3.6 18.6 1.0 CB A:SER23 3.6 19.1 1.0 HA A:ASP19 3.8 13.6 1.0 ND2 A:ASN21 3.9 21.7 1.0 H A:ASP27 4.0 13.7 1.0 N A:SER23 4.0 17.4 1.0 OD2 A:ASP19 4.2 16.8 1.0 H A:GLY24 4.3 18.4 1.0 H A:GLY22 4.3 18.2 1.0 OD1 A:ASP27 4.3 18.9 1.0 CA A:ILE26 4.3 13.3 1.0 CB A:ASP30 4.3 12.0 1.0 N A:THR25 4.3 16.1 1.0 CA A:SER23 4.4 18.0 1.0 HB2 A:SER23 4.4 18.7 1.0 N A:ILE26 4.4 13.1 1.0 N A:ASN21 4.4 15.7 1.0 CA A:ASP19 4.4 13.5 1.0 CB A:ASP19 4.4 14.1 1.0 O A:HOH391 4.4 32.0 1.0 HB A:THR25 4.5 21.0 1.0 CA A:THR25 4.5 15.4 1.0 CB A:ASN21 4.6 17.3 1.0 N A:ASP27 4.6 13.3 1.0 N A:GLY22 4.6 17.7 1.0 C A:ASP19 4.6 13.4 1.0 HB2 A:ASP19 4.7 14.2 1.0 HB2 A:ASP30 4.7 12.3 1.0 N A:GLY24 4.7 17.7 1.0 HB3 A:ASP30 4.7 12.2 1.0 H A:THR20 4.8 13.4 1.0 CG A:ASP27 4.8 18.6 1.0 C A:ILE26 4.8 14.2 1.0 HB3 A:ASN21 4.8 17.6 1.0 CA A:ASN21 4.8 16.9 1.0 N A:THR20 4.9 13.2 1.0 C A:ASN21 4.9 19.5 1.0 C A:SER23 4.9 21.1 1.0 H A:ASP30 4.9 12.3 1.0

Y.S.Zhang, H.Y.Xu, Z.Wang, L.Zhang, P.Zhao, P.C.Guo. Crystal Structure of Juvenile Hormone Diol Kinase Jhdk-L2 From Silkworm, Bombyx Mori To Be Published.