Calcium in PDB 6kth: Crystal Structure of Juvenile Hormone Diol Kinase Jhdk-L2 From Silkworm, Bombyx Mori

Protein crystallography data

The structure of Crystal Structure of Juvenile Hormone Diol Kinase Jhdk-L2 From Silkworm, Bombyx Mori, PDB code: 6kth was solved by Y.S.Zhang, H.Y.Xu, Z.Wang, L.Zhang, P.Zhao, P.C.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.50 / 1.22
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 47.960, 67.570, 69.470, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 20

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Juvenile Hormone Diol Kinase Jhdk-L2 From Silkworm, Bombyx Mori (pdb code 6kth). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Juvenile Hormone Diol Kinase Jhdk-L2 From Silkworm, Bombyx Mori, PDB code: 6kth:

Calcium binding site 1 out of 1 in 6kth

Go back to Calcium Binding Sites List in 6kth
Calcium binding site 1 out of 1 in the Crystal Structure of Juvenile Hormone Diol Kinase Jhdk-L2 From Silkworm, Bombyx Mori


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Juvenile Hormone Diol Kinase Jhdk-L2 From Silkworm, Bombyx Mori within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca201

b:15.1
occ:1.00
OD1 A:ASP19 2.3 15.2 1.0
O A:THR25 2.3 16.2 1.0
OD1 A:ASN21 2.3 16.8 1.0
O A:HOH347 2.3 23.9 1.0
OD2 A:ASP30 2.4 14.4 1.0
OG A:SER23 2.5 18.1 1.0
OD1 A:ASP30 2.6 15.2 1.0
CG A:ASP30 2.9 13.4 1.0
H A:SER23 3.1 17.8 1.0
CG A:ASN21 3.4 19.4 1.0
CG A:ASP19 3.5 15.6 1.0
HA A:ILE26 3.6 13.5 1.0
C A:THR25 3.6 14.3 1.0
H A:THR25 3.6 16.2 1.0
H A:ASN21 3.6 15.9 1.0
HB3 A:SER23 3.6 18.6 1.0
CB A:SER23 3.6 19.1 1.0
HA A:ASP19 3.8 13.6 1.0
ND2 A:ASN21 3.9 21.7 1.0
H A:ASP27 4.0 13.7 1.0
N A:SER23 4.0 17.4 1.0
OD2 A:ASP19 4.2 16.8 1.0
H A:GLY24 4.3 18.4 1.0
H A:GLY22 4.3 18.2 1.0
OD1 A:ASP27 4.3 18.9 1.0
CA A:ILE26 4.3 13.3 1.0
CB A:ASP30 4.3 12.0 1.0
N A:THR25 4.3 16.1 1.0
CA A:SER23 4.4 18.0 1.0
HB2 A:SER23 4.4 18.7 1.0
N A:ILE26 4.4 13.1 1.0
N A:ASN21 4.4 15.7 1.0
CA A:ASP19 4.4 13.5 1.0
CB A:ASP19 4.4 14.1 1.0
O A:HOH391 4.4 32.0 1.0
HB A:THR25 4.5 21.0 1.0
CA A:THR25 4.5 15.4 1.0
CB A:ASN21 4.6 17.3 1.0
N A:ASP27 4.6 13.3 1.0
N A:GLY22 4.6 17.7 1.0
C A:ASP19 4.6 13.4 1.0
HB2 A:ASP19 4.7 14.2 1.0
HB2 A:ASP30 4.7 12.3 1.0
N A:GLY24 4.7 17.7 1.0
HB3 A:ASP30 4.7 12.2 1.0
H A:THR20 4.8 13.4 1.0
CG A:ASP27 4.8 18.6 1.0
C A:ILE26 4.8 14.2 1.0
HB3 A:ASN21 4.8 17.6 1.0
CA A:ASN21 4.8 16.9 1.0
N A:THR20 4.9 13.2 1.0
C A:ASN21 4.9 19.5 1.0
C A:SER23 4.9 21.1 1.0
H A:ASP30 4.9 12.3 1.0

Reference:

Y.S.Zhang, H.Y.Xu, Z.Wang, L.Zhang, P.Zhao, P.C.Guo. Crystal Structure of Juvenile Hormone Diol Kinase Jhdk-L2 From Silkworm, Bombyx Mori To Be Published.
Page generated: Sat Dec 12 06:19:20 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy