Calcium in PDB 6l3u: Human CX31.3/GJC3 Connexin Hemichannel in the Presence of Calcium

Calcium Binding Sites:

The binding sites of Calcium atom in the Human CX31.3/GJC3 Connexin Hemichannel in the Presence of Calcium (pdb code 6l3u). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Human CX31.3/GJC3 Connexin Hemichannel in the Presence of Calcium, PDB code: 6l3u:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;

Calcium binding site 1 out of 6 in 6l3u

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Calcium binding site 1 out of 6 in the Human CX31.3/GJC3 Connexin Hemichannel in the Presence of Calcium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Human CX31.3/GJC3 Connexin Hemichannel in the Presence of Calcium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca302

b:31.9
occ:1.00
OD1 A:ASP66 2.5 26.8 1.0
H B:GLU187 2.7 19.4 1.0
HB2 B:SER186 2.9 21.6 1.0
HA A:PRO70 2.9 22.9 1.0
HA B:ARG184 3.0 21.0 1.0
HB2 B:GLU187 3.0 19.4 1.0
O A:HIS69 3.3 26.0 1.0
HA A:ASP66 3.3 26.8 1.0
N B:GLU187 3.4 19.4 1.0
HG2 B:ARG184 3.4 21.0 1.0
H B:SER186 3.5 21.6 1.0
HB3 B:ARG184 3.6 21.0 1.0
CG A:ASP66 3.6 26.8 1.0
HB3 B:GLU187 3.7 19.4 1.0
CB B:GLU187 3.7 19.4 1.0
CA B:ARG184 3.8 21.0 1.0
CA A:PRO70 3.8 22.9 1.0
CB B:SER186 3.8 21.6 1.0
O A:PRO70 3.9 22.9 1.0
CB B:ARG184 4.0 21.0 1.0
O B:HOH404 4.0 23.6 1.0
N B:SER186 4.0 21.6 1.0
C A:PRO70 4.1 22.9 1.0
CG B:ARG184 4.1 21.0 1.0
CA A:ASP66 4.2 26.8 1.0
C B:ARG184 4.2 21.0 1.0
CA B:GLU187 4.2 19.4 1.0
CA B:SER186 4.2 21.6 1.0
C B:SER186 4.3 21.6 1.0
HB3 B:SER186 4.3 21.6 1.0
C A:HIS69 4.3 26.0 1.0
CB A:ASP66 4.4 26.8 1.0
HG B:SER186 4.4 21.6 1.0
O A:ASP66 4.4 26.8 1.0
HD2 B:ARG184 4.5 21.0 1.0
OE1 B:GLU187 4.5 19.4 1.0
OD2 A:ASP66 4.5 26.8 1.0
HB2 A:ASP66 4.5 26.8 1.0
HD2 B:PRO185 4.5 22.1 1.0
N A:PRO70 4.5 22.9 1.0
N B:PRO185 4.6 22.1 1.0
HA B:GLU187 4.6 19.4 1.0
O B:ARG184 4.6 21.0 1.0
OG B:SER186 4.6 21.6 1.0
C A:ASP66 4.8 26.8 1.0
CD B:ARG184 4.8 21.0 1.0
HB3 A:PRO70 4.9 22.9 1.0
HG3 B:ARG184 4.9 21.0 1.0
CB A:PRO70 4.9 22.9 1.0
HE2 A:PHE65 4.9 26.8 1.0
H B:ARG184 4.9 21.0 1.0
HB2 B:ARG184 4.9 21.0 1.0
N B:ARG184 5.0 21.0 1.0
N A:LEU71 5.0 20.6 1.0

Calcium binding site 2 out of 6 in 6l3u

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Calcium binding site 2 out of 6 in the Human CX31.3/GJC3 Connexin Hemichannel in the Presence of Calcium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Human CX31.3/GJC3 Connexin Hemichannel in the Presence of Calcium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca302

b:33.1
occ:1.00
OD1 B:ASP66 2.5 26.0 1.0
H C:GLU187 2.7 19.1 1.0
HB2 C:SER186 2.9 21.4 1.0
HA B:PRO70 2.9 22.5 1.0
HA C:ARG184 3.0 20.8 1.0
HB2 C:GLU187 3.0 19.1 1.0
O B:HIS69 3.3 25.8 1.0
HA B:ASP66 3.3 26.0 1.0
HG2 C:ARG184 3.4 20.8 1.0
N C:GLU187 3.4 19.1 1.0
H C:SER186 3.5 21.4 1.0
HB3 C:ARG184 3.5 20.8 1.0
CG B:ASP66 3.6 26.0 1.0
HB3 C:GLU187 3.7 19.1 1.0
CB C:GLU187 3.7 19.1 1.0
CA C:ARG184 3.7 20.8 1.0
CA B:PRO70 3.8 22.5 1.0
CB C:SER186 3.8 21.4 1.0
O B:PRO70 3.9 22.5 1.0
CB C:ARG184 3.9 20.8 1.0
O C:HOH404 4.0 23.8 1.0
N C:SER186 4.0 21.4 1.0
C B:PRO70 4.1 22.5 1.0
CG C:ARG184 4.1 20.8 1.0
C C:ARG184 4.1 20.8 1.0
CA B:ASP66 4.2 26.0 1.0
CA C:GLU187 4.2 19.1 1.0
CA C:SER186 4.3 21.4 1.0
C C:SER186 4.3 21.4 1.0
C B:HIS69 4.3 25.8 1.0
HB3 C:SER186 4.3 21.4 1.0
CB B:ASP66 4.4 26.0 1.0
HG C:SER186 4.4 21.4 1.0
O B:ASP66 4.4 26.0 1.0
HD2 C:ARG184 4.4 20.8 1.0
OE1 C:GLU187 4.5 19.1 1.0
OD2 B:ASP66 4.5 26.0 1.0
HD2 C:PRO185 4.5 21.8 1.0
HB2 B:ASP66 4.5 26.0 1.0
N B:PRO70 4.5 22.5 1.0
N C:PRO185 4.6 21.8 1.0
O C:ARG184 4.6 20.8 1.0
HA C:GLU187 4.6 19.1 1.0
OG C:SER186 4.6 21.4 1.0
CD C:ARG184 4.8 20.8 1.0
C B:ASP66 4.8 26.0 1.0
HG3 C:ARG184 4.9 20.8 1.0
HB3 B:PRO70 4.9 22.5 1.0
H C:ARG184 4.9 20.8 1.0
HB2 C:ARG184 4.9 20.8 1.0
CB B:PRO70 4.9 22.5 1.0
N C:ARG184 4.9 20.8 1.0
HE2 B:PHE65 4.9 26.4 1.0
N B:LEU71 5.0 20.2 1.0
CG C:GLU187 5.0 19.1 1.0

Calcium binding site 3 out of 6 in 6l3u

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Calcium binding site 3 out of 6 in the Human CX31.3/GJC3 Connexin Hemichannel in the Presence of Calcium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Human CX31.3/GJC3 Connexin Hemichannel in the Presence of Calcium within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca302

b:34.5
occ:1.00
OD1 C:ASP66 2.5 26.3 1.0
H D:GLU187 2.6 19.3 1.0
HB2 D:SER186 2.9 21.4 1.0
HA C:PRO70 2.9 22.5 1.0
HA D:ARG184 3.0 20.9 1.0
HB2 D:GLU187 3.0 19.3 1.0
O C:HIS69 3.3 25.6 1.0
HA C:ASP66 3.3 26.3 1.0
HG2 D:ARG184 3.4 20.9 1.0
N D:GLU187 3.4 19.3 1.0
HB3 D:ARG184 3.5 20.9 1.0
H D:SER186 3.5 21.4 1.0
CG C:ASP66 3.6 26.3 1.0
HB3 D:GLU187 3.7 19.3 1.0
CB D:GLU187 3.7 19.3 1.0
CA D:ARG184 3.7 20.9 1.0
CA C:PRO70 3.8 22.5 1.0
CB D:SER186 3.8 21.4 1.0
O C:PRO70 3.9 22.5 1.0
CB D:ARG184 3.9 20.9 1.0
O D:HOH404 4.0 23.6 1.0
N D:SER186 4.0 21.4 1.0
C C:PRO70 4.1 22.5 1.0
CG D:ARG184 4.1 20.9 1.0
C D:ARG184 4.1 20.9 1.0
CA D:GLU187 4.2 19.3 1.0
CA C:ASP66 4.2 26.3 1.0
CA D:SER186 4.2 21.4 1.0
C D:SER186 4.3 21.4 1.0
C C:HIS69 4.3 25.6 1.0
HB3 D:SER186 4.3 21.4 1.0
CB C:ASP66 4.4 26.3 1.0
O C:ASP66 4.4 26.3 1.0
HG D:SER186 4.4 21.4 1.0
HD2 D:ARG184 4.4 20.9 1.0
OE1 D:GLU187 4.5 19.3 1.0
OD2 C:ASP66 4.5 26.3 1.0
HD2 D:PRO185 4.5 21.8 1.0
HB2 C:ASP66 4.5 26.3 1.0
N C:PRO70 4.5 22.5 1.0
O D:ARG184 4.5 20.9 1.0
N D:PRO185 4.5 21.8 1.0
HA D:GLU187 4.6 19.3 1.0
OG D:SER186 4.6 21.4 1.0
CD D:ARG184 4.8 20.9 1.0
C C:ASP66 4.8 26.3 1.0
HG3 D:ARG184 4.9 20.9 1.0
HB3 C:PRO70 4.9 22.5 1.0
HB2 D:ARG184 4.9 20.9 1.0
H D:ARG184 4.9 20.9 1.0
N D:ARG184 4.9 20.9 1.0
CB C:PRO70 4.9 22.5 1.0
HE2 C:PHE65 4.9 26.2 1.0
CG D:GLU187 5.0 19.3 1.0
N C:LEU71 5.0 20.1 1.0

Calcium binding site 4 out of 6 in 6l3u

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Calcium binding site 4 out of 6 in the Human CX31.3/GJC3 Connexin Hemichannel in the Presence of Calcium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Human CX31.3/GJC3 Connexin Hemichannel in the Presence of Calcium within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca302

b:31.6
occ:1.00
OD1 D:ASP66 2.5 26.6 1.0
H E:GLU187 2.7 19.4 1.0
HB2 E:SER186 2.9 21.5 1.0
HA D:PRO70 2.9 22.8 1.0
HA E:ARG184 3.0 21.0 1.0
HB2 E:GLU187 3.0 19.4 1.0
O D:HIS69 3.3 26.0 1.0
HA D:ASP66 3.3 26.6 1.0
HG2 E:ARG184 3.4 21.0 1.0
N E:GLU187 3.4 19.4 1.0
H E:SER186 3.5 21.5 1.0
HB3 E:ARG184 3.5 21.0 1.0
CG D:ASP66 3.6 26.6 1.0
HB3 E:GLU187 3.7 19.4 1.0
CB E:GLU187 3.7 19.4 1.0
CA E:ARG184 3.7 21.0 1.0
CA D:PRO70 3.8 22.8 1.0
CB E:SER186 3.8 21.5 1.0
O D:PRO70 3.9 22.8 1.0
CB E:ARG184 4.0 21.0 1.0
O E:HOH404 4.0 23.9 1.0
N E:SER186 4.0 21.5 1.0
C D:PRO70 4.1 22.8 1.0
CG E:ARG184 4.1 21.0 1.0
C E:ARG184 4.1 21.0 1.0
CA D:ASP66 4.2 26.6 1.0
CA E:GLU187 4.2 19.4 1.0
CA E:SER186 4.3 21.5 1.0
C E:SER186 4.3 21.5 1.0
C D:HIS69 4.3 26.0 1.0
HB3 E:SER186 4.3 21.5 1.0
CB D:ASP66 4.4 26.6 1.0
O D:ASP66 4.4 26.6 1.0
HG E:SER186 4.4 21.5 1.0
HD2 E:ARG184 4.4 21.0 1.0
OE1 E:GLU187 4.5 19.4 1.0
OD2 D:ASP66 4.5 26.6 1.0
HD2 E:PRO185 4.5 22.0 1.0
HB2 D:ASP66 4.5 26.6 1.0
N D:PRO70 4.5 22.8 1.0
N E:PRO185 4.6 22.0 1.0
O E:ARG184 4.6 21.0 1.0
HA E:GLU187 4.6 19.4 1.0
OG E:SER186 4.6 21.5 1.0
CD E:ARG184 4.8 21.0 1.0
C D:ASP66 4.8 26.6 1.0
HB3 D:PRO70 4.9 22.8 1.0
HG3 E:ARG184 4.9 21.0 1.0
HB2 E:ARG184 4.9 21.0 1.0
H E:ARG184 4.9 21.0 1.0
CB D:PRO70 4.9 22.8 1.0
HE2 D:PHE65 4.9 26.7 1.0
N E:ARG184 4.9 21.0 1.0
N D:LEU71 5.0 20.6 1.0
CG E:GLU187 5.0 19.4 1.0

Calcium binding site 5 out of 6 in 6l3u

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Calcium binding site 5 out of 6 in the Human CX31.3/GJC3 Connexin Hemichannel in the Presence of Calcium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Human CX31.3/GJC3 Connexin Hemichannel in the Presence of Calcium within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca302

b:33.0
occ:1.00
OD1 E:ASP66 2.5 26.1 1.0
H F:GLU187 2.7 19.2 1.0
HB2 F:SER186 2.9 21.4 1.0
HA E:PRO70 2.9 22.5 1.0
HA F:ARG184 3.0 20.9 1.0
HB2 F:GLU187 3.0 19.2 1.0
O E:HIS69 3.3 25.9 1.0
HA E:ASP66 3.3 26.1 1.0
HG2 F:ARG184 3.4 20.9 1.0
N F:GLU187 3.4 19.2 1.0
H F:SER186 3.5 21.4 1.0
HB3 F:ARG184 3.5 20.9 1.0
CG E:ASP66 3.6 26.1 1.0
HB3 F:GLU187 3.7 19.2 1.0
CB F:GLU187 3.7 19.2 1.0
CA F:ARG184 3.7 20.9 1.0
CA E:PRO70 3.8 22.5 1.0
CB F:SER186 3.8 21.4 1.0
O E:PRO70 3.9 22.5 1.0
CB F:ARG184 3.9 20.9 1.0
O F:HOH404 4.0 24.1 1.0
N F:SER186 4.0 21.4 1.0
C E:PRO70 4.1 22.5 1.0
CG F:ARG184 4.1 20.9 1.0
C F:ARG184 4.1 20.9 1.0
CA E:ASP66 4.2 26.1 1.0
CA F:GLU187 4.2 19.2 1.0
CA F:SER186 4.3 21.4 1.0
C F:SER186 4.3 21.4 1.0
C E:HIS69 4.3 25.9 1.0
HB3 F:SER186 4.3 21.4 1.0
CB E:ASP66 4.4 26.1 1.0
O E:ASP66 4.4 26.1 1.0
HG F:SER186 4.4 21.4 1.0
HD2 F:ARG184 4.4 20.9 1.0
OE1 F:GLU187 4.5 19.2 1.0
OD2 E:ASP66 4.5 26.1 1.0
HD2 F:PRO185 4.5 21.8 1.0
HB2 E:ASP66 4.5 26.1 1.0
N E:PRO70 4.5 22.5 1.0
N F:PRO185 4.6 21.8 1.0
O F:ARG184 4.6 20.9 1.0
HA F:GLU187 4.6 19.2 1.0
OG F:SER186 4.6 21.4 1.0
CD F:ARG184 4.8 20.9 1.0
C E:ASP66 4.8 26.1 1.0
HG3 F:ARG184 4.9 20.9 1.0
HB3 E:PRO70 4.9 22.5 1.0
H F:ARG184 4.9 20.9 1.0
HB2 F:ARG184 4.9 20.9 1.0
CB E:PRO70 4.9 22.5 1.0
N F:ARG184 4.9 20.9 1.0
HE2 E:PHE65 4.9 26.4 1.0
N E:LEU71 5.0 20.3 1.0
CG F:GLU187 5.0 19.2 1.0

Calcium binding site 6 out of 6 in 6l3u

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Calcium binding site 6 out of 6 in the Human CX31.3/GJC3 Connexin Hemichannel in the Presence of Calcium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Human CX31.3/GJC3 Connexin Hemichannel in the Presence of Calcium within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca301

b:34.5
occ:1.00
OD1 F:ASP66 2.5 26.6 1.0
H A:GLU187 2.7 19.4 1.0
HA F:PRO70 2.9 22.5 1.0
HA A:ARG184 3.0 21.0 1.0
HB2 A:SER186 3.0 21.6 1.0
HB2 A:GLU187 3.0 19.4 1.0
O F:HIS69 3.3 25.8 1.0
HA F:ASP66 3.3 26.6 1.0
HG2 A:ARG184 3.3 21.0 1.0
N A:GLU187 3.5 19.4 1.0
HB3 A:ARG184 3.5 21.0 1.0
CG F:ASP66 3.6 26.6 1.0
H A:SER186 3.6 21.6 1.0
HB3 A:GLU187 3.7 19.4 1.0
CB A:GLU187 3.7 19.4 1.0
CA A:ARG184 3.7 21.0 1.0
CA F:PRO70 3.8 22.5 1.0
O F:PRO70 3.9 22.5 1.0
CB A:ARG184 3.9 21.0 1.0
CB A:SER186 3.9 21.6 1.0
O A:HOH404 4.0 23.6 1.0
CG A:ARG184 4.0 21.0 1.0
C F:PRO70 4.1 22.5 1.0
N A:SER186 4.1 21.6 1.0
C A:ARG184 4.2 21.0 1.0
CA F:ASP66 4.2 26.6 1.0
CA A:GLU187 4.2 19.4 1.0
C F:HIS69 4.3 25.8 1.0
CA A:SER186 4.3 21.6 1.0
C A:SER186 4.3 21.6 1.0
HD2 A:ARG184 4.3 21.0 1.0
CB F:ASP66 4.4 26.6 1.0
O F:ASP66 4.4 26.6 1.0
OE1 A:GLU187 4.4 19.4 1.0
HB3 A:SER186 4.4 21.6 1.0
HG A:SER186 4.5 21.6 1.0
OD2 F:ASP66 4.5 26.6 1.0
HB2 F:ASP66 4.5 26.6 1.0
HD2 A:PRO185 4.5 21.9 1.0
N F:PRO70 4.5 22.5 1.0
O A:ARG184 4.6 21.0 1.0
N A:PRO185 4.6 21.9 1.0
HA A:GLU187 4.6 19.4 1.0
CD A:ARG184 4.7 21.0 1.0
OG A:SER186 4.7 21.6 1.0
HG3 A:ARG184 4.8 21.0 1.0
C F:ASP66 4.8 26.6 1.0
HB2 A:ARG184 4.9 21.0 1.0
HB3 F:PRO70 4.9 22.5 1.0
H A:ARG184 4.9 21.0 1.0
N A:ARG184 4.9 21.0 1.0
CB F:PRO70 4.9 22.5 1.0
HE2 F:PHE65 4.9 26.5 1.0
HD3 A:ARG184 5.0 21.0 1.0
CG A:GLU187 5.0 19.4 1.0
N F:LEU71 5.0 20.3 1.0

Reference:

H.J.Lee, H.Jeong, J.Hyun, B.Ryu, K.Park, H.H.Lim, J.Yoo, J.S.Woo. Cryo-Em Structure of Human CX31.3/GJC3 Connexin Hemichannel. Sci Adv V. 6 A4996 2020.
ISSN: ESSN 2375-2548
PubMed: 32923625
DOI: 10.1126/SCIADV.ABA4996
Page generated: Sat Dec 12 06:20:08 2020

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