Calcium in PDB 6lb7: Crystal Structure of the CA2+-Free and CA2+-Bound MICU1-MICU2 Complex
Protein crystallography data
The structure of Crystal Structure of the CA2+-Free and CA2+-Bound MICU1-MICU2 Complex, PDB code: 6lb7
was solved by
W.Wu,
Q.Shen,
J.Zheng,
Z.Jia,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.30 /
2.10
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
85.481,
107.721,
170.381,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
19.4 /
22.7
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Crystal Structure of the CA2+-Free and CA2+-Bound MICU1-MICU2 Complex
(pdb code 6lb7). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the
Crystal Structure of the CA2+-Free and CA2+-Bound MICU1-MICU2 Complex, PDB code: 6lb7:
Jump to Calcium binding site number:
1;
2;
Calcium binding site 1 out
of 2 in 6lb7
Go back to
Calcium Binding Sites List in 6lb7
Calcium binding site 1 out
of 2 in the Crystal Structure of the CA2+-Free and CA2+-Bound MICU1-MICU2 Complex
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of the CA2+-Free and CA2+-Bound MICU1-MICU2 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca501
b:34.3
occ:1.00
|
OD1
|
A:ASP421
|
2.3
|
29.8
|
1.0
|
OD1
|
A:ASN425
|
2.3
|
42.4
|
1.0
|
O
|
A:GLU427
|
2.4
|
28.7
|
1.0
|
OE1
|
A:GLU432
|
2.5
|
47.3
|
1.0
|
O
|
A:HOH732
|
2.5
|
47.4
|
1.0
|
OD1
|
A:ASP423
|
2.6
|
37.2
|
1.0
|
OE2
|
A:GLU432
|
2.6
|
50.8
|
1.0
|
CD
|
A:GLU432
|
2.9
|
45.7
|
1.0
|
CG
|
A:ASN425
|
3.3
|
43.1
|
1.0
|
CG
|
A:ASP423
|
3.3
|
40.4
|
1.0
|
CG
|
A:ASP421
|
3.4
|
31.8
|
1.0
|
OD2
|
A:ASP423
|
3.5
|
40.0
|
1.0
|
C
|
A:GLU427
|
3.6
|
34.0
|
1.0
|
ND2
|
A:ASN425
|
3.8
|
42.1
|
1.0
|
N
|
A:ASN425
|
4.1
|
40.5
|
1.0
|
OD2
|
A:ASP421
|
4.2
|
33.5
|
1.0
|
O
|
A:HOH682
|
4.2
|
36.8
|
1.0
|
CA
|
A:ASP421
|
4.2
|
35.9
|
1.0
|
CB
|
A:ASP421
|
4.3
|
32.7
|
1.0
|
N
|
A:GLU427
|
4.3
|
29.0
|
1.0
|
CB
|
A:ASN425
|
4.4
|
36.9
|
1.0
|
N
|
A:SER429
|
4.4
|
32.3
|
1.0
|
CA
|
A:LEU428
|
4.4
|
23.2
|
1.0
|
CG
|
A:GLU432
|
4.4
|
39.9
|
1.0
|
N
|
A:LEU428
|
4.5
|
28.4
|
1.0
|
N
|
A:ASP423
|
4.5
|
41.8
|
1.0
|
C
|
A:ASP421
|
4.6
|
42.6
|
1.0
|
CB
|
A:ASP423
|
4.6
|
43.6
|
1.0
|
N
|
A:GLY424
|
4.6
|
45.8
|
1.0
|
CA
|
A:GLU427
|
4.6
|
31.7
|
1.0
|
CA
|
A:ASN425
|
4.7
|
39.1
|
1.0
|
N
|
A:CYS422
|
4.7
|
38.0
|
1.0
|
N
|
A:GLY426
|
4.8
|
40.2
|
1.0
|
C
|
A:ASP423
|
4.9
|
43.5
|
1.0
|
CA
|
A:ASP423
|
4.9
|
41.8
|
1.0
|
C
|
A:LEU428
|
4.9
|
31.5
|
1.0
|
C
|
A:ASN425
|
4.9
|
40.6
|
1.0
|
|
Calcium binding site 2 out
of 2 in 6lb7
Go back to
Calcium Binding Sites List in 6lb7
Calcium binding site 2 out
of 2 in the Crystal Structure of the CA2+-Free and CA2+-Bound MICU1-MICU2 Complex
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of the CA2+-Free and CA2+-Bound MICU1-MICU2 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca501
b:22.7
occ:1.00
|
OD1
|
B:ASP185
|
2.2
|
21.6
|
1.0
|
O
|
B:MET191
|
2.3
|
23.7
|
1.0
|
OE1
|
B:GLU196
|
2.4
|
20.1
|
1.0
|
OE2
|
B:GLU196
|
2.4
|
22.1
|
1.0
|
OD2
|
B:ASP187
|
2.4
|
30.3
|
1.0
|
OD1
|
B:ASN189
|
2.5
|
23.0
|
1.0
|
O
|
B:HOH638
|
2.6
|
32.9
|
1.0
|
CD
|
B:GLU196
|
2.7
|
21.5
|
1.0
|
CG
|
B:ASP187
|
3.3
|
26.9
|
1.0
|
CG
|
B:ASP185
|
3.4
|
25.9
|
1.0
|
CG
|
B:ASN189
|
3.5
|
26.5
|
1.0
|
C
|
B:MET191
|
3.5
|
26.8
|
1.0
|
OD1
|
B:ASP187
|
3.6
|
36.3
|
1.0
|
ND2
|
B:ASN189
|
4.0
|
25.9
|
1.0
|
CA
|
B:ASP185
|
4.1
|
21.6
|
1.0
|
CG
|
B:GLU196
|
4.2
|
19.3
|
1.0
|
CB
|
B:ASP185
|
4.2
|
18.9
|
1.0
|
N
|
B:MET191
|
4.3
|
20.3
|
1.0
|
CA
|
B:ILE192
|
4.3
|
19.6
|
1.0
|
N
|
B:ASN189
|
4.3
|
25.2
|
1.0
|
CG
|
B:GLU193
|
4.3
|
45.6
|
1.0
|
OD2
|
B:ASP185
|
4.4
|
18.6
|
1.0
|
O
|
B:HOH736
|
4.4
|
24.5
|
1.0
|
N
|
B:ILE192
|
4.4
|
22.3
|
1.0
|
N
|
B:ASP187
|
4.4
|
22.2
|
1.0
|
C
|
B:ASP185
|
4.5
|
20.6
|
1.0
|
CA
|
B:MET191
|
4.5
|
26.5
|
1.0
|
N
|
B:GLU193
|
4.5
|
17.9
|
1.0
|
CB
|
B:ASP187
|
4.5
|
23.4
|
1.0
|
N
|
B:GLY188
|
4.6
|
28.8
|
1.0
|
CB
|
B:ASN189
|
4.6
|
19.1
|
1.0
|
OE2
|
B:GLU193
|
4.7
|
54.3
|
1.0
|
N
|
B:THR186
|
4.7
|
24.6
|
1.0
|
C
|
B:ILE192
|
4.8
|
24.1
|
1.0
|
CA
|
B:ASP187
|
4.8
|
30.8
|
1.0
|
CA
|
B:ASN189
|
4.9
|
25.5
|
1.0
|
N
|
B:GLU190
|
4.9
|
24.1
|
1.0
|
CB
|
B:MET191
|
4.9
|
32.5
|
1.0
|
CD
|
B:GLU193
|
4.9
|
55.5
|
1.0
|
C
|
B:ASN189
|
5.0
|
26.1
|
1.0
|
C
|
B:ASP187
|
5.0
|
32.6
|
1.0
|
|
Reference:
W.Wu,
Q.Shen,
R.Zhang,
Z.Qiu,
J.Zheng,
Z.Jia.
Crystal Structure of the CA2+-Free and CA2+-Bound MICU1-MICU2 Complex To Be Published.
Page generated: Tue Jul 16 10:48:01 2024
|