Calcium in PDB 6ler: 169 Bp Nucleosome Harboring Non-Identical Cohesive Dna Termini.

The structure of 169 Bp Nucleosome Harboring Non-Identical Cohesive Dna Termini., PDB code: 6ler was solved by D.Sharma, Z.Adhireksan, P.L.Lee, C.A.Davey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.12 / 3.00
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	107.338, 116.545, 117.9, 61.5, 82.77, 64.23
R / Rfree (%)	20.8 / 26.1

The structure of 169 Bp Nucleosome Harboring Non-Identical Cohesive Dna Termini. also contains other interesting chemical elements:

Potassium

(K)

3 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Calcium atom in the 169 Bp Nucleosome Harboring Non-Identical Cohesive Dna Termini. (pdb code 6ler). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 14 binding sites of Calcium where determined in the 169 Bp Nucleosome Harboring Non-Identical Cohesive Dna Termini., PDB code: 6ler:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 14 in the 169 Bp Nucleosome Harboring Non-Identical Cohesive Dna Termini.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of 169 Bp Nucleosome Harboring Non-Identical Cohesive Dna Termini. within 5.0Å range: probe atom residue distance (Å) B Occ S:Ca101 b:150.4 occ:1.00 N7 S:DA-34 3.6 121.2 1.0 C8 S:DA-34 4.3 116.1 1.0 C5 S:DA-34 4.7 124.1 1.0 N6 S:DA-34 4.8 121.2 1.0

Calcium binding site 2 out of 14 in the 169 Bp Nucleosome Harboring Non-Identical Cohesive Dna Termini.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of 169 Bp Nucleosome Harboring Non-Identical Cohesive Dna Termini. within 5.0Å range: probe atom residue distance (Å) B Occ S:Ca102 b:122.0 occ:1.00 O6 S:DG48 3.5 128.8 1.0 N7 S:DA47 4.0 122.2 1.0 N7 S:DG48 4.3 101.3 1.0 C8 S:DA47 4.4 116.5 1.0 C6 S:DG48 4.4 117.6 1.0 O6 T:DG-49 4.4 128.2 1.0 N4 T:DC-48 4.5 109.6 1.0 C5 S:DG48 4.7 110.4 1.0

Calcium binding site 3 out of 14 in the 169 Bp Nucleosome Harboring Non-Identical Cohesive Dna Termini.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of 169 Bp Nucleosome Harboring Non-Identical Cohesive Dna Termini. within 5.0Å range: probe atom residue distance (Å) B Occ S:Ca103 b:114.6 occ:1.00 C4' S:DG56 4.1 118.5 1.0 O4' S:DG56 4.2 125.9 1.0 C5' S:DG56 4.2 130.3 1.0 NH2 Q:ARG77 4.5 126.9 1.0 C4' T:DG-53 4.6 103.3 1.0 C5' T:DG-53 4.7 102.8 1.0

Calcium binding site 4 out of 14 in the 169 Bp Nucleosome Harboring Non-Identical Cohesive Dna Termini.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of 169 Bp Nucleosome Harboring Non-Identical Cohesive Dna Termini. within 5.0Å range: probe atom residue distance (Å) B Occ S:Ca104 b:105.2 occ:1.00 O6 T:DG-52 3.1 152.4 1.0 O6 S:DG51 3.1 143.3 1.0 N7 T:DG-52 3.6 131.2 1.0 N4 T:DC-51 3.7 151.1 1.0 C6 T:DG-52 3.9 144.1 1.0 C5 T:DG-52 4.1 138.6 1.0 C6 S:DG51 4.3 132.7 1.0 N7 T:DG-53 4.8 136.5 1.0 C8 T:DG-52 4.8 125.0 1.0 N4 S:DC52 4.9 130.3 1.0 C4 T:DC-51 4.9 151.8 1.0

Calcium binding site 5 out of 14 in the 169 Bp Nucleosome Harboring Non-Identical Cohesive Dna Termini.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of 169 Bp Nucleosome Harboring Non-Identical Cohesive Dna Termini. within 5.0Å range: probe atom residue distance (Å) B Occ S:Ca105 b:123.2 occ:1.00 N3 S:DG-22 4.0 111.8 1.0 N3 T:DA23 4.0 104.9 1.0 O4' T:DC24 4.2 97.8 1.0 C2 T:DA23 4.2 95.6 1.0 N2 S:DG-22 4.4 127.7 1.0 C2 S:DG-22 4.6 112.6 1.0 C1' S:DG-22 4.6 84.9 1.0 O4' S:DG-22 4.7 80.8 1.0 C4' T:DC24 4.7 89.0 1.0 C4 S:DG-22 4.9 100.5 1.0 C4' S:DG-22 5.0 84.5 1.0

Calcium binding site 6 out of 14 in the 169 Bp Nucleosome Harboring Non-Identical Cohesive Dna Termini.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of 169 Bp Nucleosome Harboring Non-Identical Cohesive Dna Termini. within 5.0Å range: probe atom residue distance (Å) B Occ T:Ca101 b:134.0 occ:1.00 N7 T:DG47 3.1 154.6 1.0 C8 T:DG47 3.4 152.7 1.0 O6 T:DG48 3.6 154.3 1.0 OP2 T:DG47 3.9 112.7 1.0 N7 T:DG48 3.9 153.6 1.0 C5 T:DG47 4.3 155.6 1.0 C6 T:DG48 4.4 161.3 1.0 C5 T:DG48 4.5 155.7 1.0 N9 T:DG47 4.6 148.9 1.0

Calcium binding site 7 out of 14 in the 169 Bp Nucleosome Harboring Non-Identical Cohesive Dna Termini.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of 169 Bp Nucleosome Harboring Non-Identical Cohesive Dna Termini. within 5.0Å range: probe atom residue distance (Å) B Occ T:Ca102 b:125.8 occ:1.00 N2 T:DG-3 3.9 122.8 1.0 N3 T:DG-3 4.1 113.0 1.0 C5' T:DC-2 4.2 115.2 1.0 O4' T:DC-2 4.3 125.1 1.0 C4' T:DC-2 4.3 118.9 1.0 C2 T:DG-3 4.5 115.7 1.0 N2 S:DG4 4.6 152.7 1.0 N3 S:DG4 4.8 155.3 1.0

Calcium binding site 8 out of 14 in the 169 Bp Nucleosome Harboring Non-Identical Cohesive Dna Termini.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of 169 Bp Nucleosome Harboring Non-Identical Cohesive Dna Termini. within 5.0Å range: probe atom residue distance (Å) B Occ T:Ca103 b:127.3 occ:1.00 N7 T:DG-61 4.9 152.0 1.0

Calcium binding site 9 out of 14 in the 169 Bp Nucleosome Harboring Non-Identical Cohesive Dna Termini.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of 169 Bp Nucleosome Harboring Non-Identical Cohesive Dna Termini. within 5.0Å range: probe atom residue distance (Å) B Occ I:Ca101 b:129.6 occ:1.00 N7 I:DG47 3.9 176.5 1.0 O6 I:DG48 4.1 158.9 1.0 C8 I:DG47 4.2 180.7 1.0 N7 I:DG48 4.6 146.2 1.0

Calcium binding site 10 out of 14 in the 169 Bp Nucleosome Harboring Non-Identical Cohesive Dna Termini.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of 169 Bp Nucleosome Harboring Non-Identical Cohesive Dna Termini. within 5.0Å range: probe atom residue distance (Å) B Occ I:Ca102 b:135.6 occ:1.00 O4 J:DT-59 4.6 216.7 1.0 N6 I:DA59 4.8 147.4 1.0

D.Sharma, C.A.Davey, Z.Adhireksan. 169 Bp Nucleosome Harboring Non-Palindromic Dna with Cohesive Ends. To Be Published.