Calcium in PDB 6lid: Heteromeric Amino Acid Transporter B0,+at-Rbat Complex
Calcium Binding Sites:
The binding sites of Calcium atom in the Heteromeric Amino Acid Transporter B0,+at-Rbat Complex
(pdb code 6lid). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the
Heteromeric Amino Acid Transporter B0,+at-Rbat Complex, PDB code: 6lid:
Jump to Calcium binding site number:
1;
2;
Calcium binding site 1 out
of 2 in 6lid
Go back to
Calcium Binding Sites List in 6lid
Calcium binding site 1 out
of 2 in the Heteromeric Amino Acid Transporter B0,+at-Rbat Complex
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Heteromeric Amino Acid Transporter B0,+at-Rbat Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca711
b:32.0
occ:1.00
|
O
|
A:PHE318
|
2.5
|
38.5
|
1.0
|
O
|
A:HOH859
|
2.5
|
37.4
|
1.0
|
O
|
A:HOH837
|
2.6
|
39.8
|
1.0
|
OE1
|
A:GLU321
|
2.6
|
39.8
|
1.0
|
OD1
|
A:ASN214
|
2.7
|
38.1
|
1.0
|
O
|
A:LEU319
|
2.8
|
38.4
|
1.0
|
C
|
A:LEU319
|
3.4
|
38.4
|
1.0
|
CD
|
A:GLU321
|
3.5
|
39.8
|
1.0
|
C
|
A:PHE318
|
3.6
|
38.5
|
1.0
|
CG
|
A:ASP284
|
3.7
|
38.2
|
1.0
|
CA
|
A:LEU319
|
3.7
|
38.4
|
1.0
|
CG
|
A:ASN214
|
3.8
|
38.1
|
1.0
|
OE2
|
A:GLU321
|
3.8
|
39.8
|
1.0
|
OD1
|
A:ASP284
|
3.8
|
38.2
|
1.0
|
CB
|
A:ASP284
|
3.9
|
38.2
|
1.0
|
OD2
|
A:ASP284
|
4.0
|
38.2
|
1.0
|
N
|
A:LEU319
|
4.2
|
38.4
|
1.0
|
O
|
A:HOH856
|
4.2
|
39.5
|
1.0
|
ND2
|
A:ASN214
|
4.2
|
38.1
|
1.0
|
O
|
A:LEU285
|
4.3
|
39.1
|
1.0
|
N
|
A:LEU320
|
4.4
|
38.6
|
1.0
|
O
|
A:ASN214
|
4.4
|
38.1
|
1.0
|
CG
|
A:GLN277
|
4.5
|
36.9
|
1.0
|
CA
|
A:PHE318
|
4.9
|
38.5
|
1.0
|
NE2
|
A:GLN277
|
4.9
|
36.9
|
1.0
|
CG
|
A:GLU321
|
4.9
|
39.8
|
1.0
|
CA
|
A:LEU320
|
4.9
|
38.6
|
1.0
|
CB
|
A:PHE318
|
5.0
|
38.5
|
1.0
|
CE2
|
A:PHE275
|
5.0
|
36.4
|
1.0
|
CA
|
A:ASP284
|
5.0
|
38.2
|
1.0
|
|
Calcium binding site 2 out
of 2 in 6lid
Go back to
Calcium Binding Sites List in 6lid
Calcium binding site 2 out
of 2 in the Heteromeric Amino Acid Transporter B0,+at-Rbat Complex
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Heteromeric Amino Acid Transporter B0,+at-Rbat Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca711
b:32.4
occ:1.00
|
O
|
C:PHE318
|
2.5
|
38.6
|
1.0
|
O
|
C:HOH859
|
2.5
|
37.4
|
1.0
|
O
|
C:HOH837
|
2.6
|
39.5
|
1.0
|
OE1
|
C:GLU321
|
2.6
|
39.9
|
1.0
|
OD1
|
C:ASN214
|
2.7
|
38.1
|
1.0
|
O
|
C:LEU319
|
2.8
|
38.3
|
1.0
|
C
|
C:LEU319
|
3.4
|
38.3
|
1.0
|
CD
|
C:GLU321
|
3.6
|
39.9
|
1.0
|
C
|
C:PHE318
|
3.6
|
38.6
|
1.0
|
CG
|
C:ASP284
|
3.7
|
38.2
|
1.0
|
CA
|
C:LEU319
|
3.7
|
38.3
|
1.0
|
CG
|
C:ASN214
|
3.8
|
38.1
|
1.0
|
OE2
|
C:GLU321
|
3.8
|
39.9
|
1.0
|
OD1
|
C:ASP284
|
3.8
|
38.2
|
1.0
|
CB
|
C:ASP284
|
3.9
|
38.2
|
1.0
|
OD2
|
C:ASP284
|
4.0
|
38.2
|
1.0
|
N
|
C:LEU319
|
4.2
|
38.3
|
1.0
|
ND2
|
C:ASN214
|
4.2
|
38.1
|
1.0
|
O
|
C:HOH856
|
4.2
|
39.3
|
1.0
|
O
|
C:LEU285
|
4.3
|
39.1
|
1.0
|
N
|
C:LEU320
|
4.4
|
38.5
|
1.0
|
O
|
C:ASN214
|
4.4
|
38.1
|
1.0
|
CG
|
C:GLN277
|
4.5
|
37.1
|
1.0
|
CA
|
C:PHE318
|
4.9
|
38.6
|
1.0
|
NE2
|
C:GLN277
|
4.9
|
37.1
|
1.0
|
CG
|
C:GLU321
|
4.9
|
39.9
|
1.0
|
CA
|
C:LEU320
|
4.9
|
38.5
|
1.0
|
CB
|
C:PHE318
|
5.0
|
38.6
|
1.0
|
CE2
|
C:PHE275
|
5.0
|
36.4
|
1.0
|
CA
|
C:ASP284
|
5.0
|
38.2
|
1.0
|
|
Reference:
R.H.Yan,
Y.N.Li,
Y.Shi,
J.Y.Zhou,
J.L.Lei,
J.Huang,
Q.Zhou.
Cryo-Em Structure of the Human Heteromeric Amino Acid Transporter B0,+at-Rbat Sci Adv V. 6 2020.
ISSN: ESSN 2375-2548
DOI: 10.1126/SCIADV.AAY6379
Page generated: Sat Dec 12 06:26:29 2020
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