Calcium in PDB 6lkc: Crystal Structure of Pfad From Shewanella Piezotolerans in Complex with Fmn

Enzymatic activity of Crystal Structure of Pfad From Shewanella Piezotolerans in Complex with Fmn

All present enzymatic activity of Crystal Structure of Pfad From Shewanella Piezotolerans in Complex with Fmn:
1.3.1.9;

Protein crystallography data

The structure of Crystal Structure of Pfad From Shewanella Piezotolerans in Complex with Fmn, PDB code: 6lkc was solved by M.L.Zhang, Q.Li, S.S.Meng, L.J.Guo, L.He, J.Z.Huang, L.Li, H.D.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.61 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 70.467, 62.568, 127.507, 90.00, 105.61, 90.00
R / Rfree (%) 17.9 / 21.9

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Pfad From Shewanella Piezotolerans in Complex with Fmn (pdb code 6lkc). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Pfad From Shewanella Piezotolerans in Complex with Fmn, PDB code: 6lkc:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 6lkc

Go back to Calcium Binding Sites List in 6lkc
Calcium binding site 1 out of 2 in the Crystal Structure of Pfad From Shewanella Piezotolerans in Complex with Fmn


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Pfad From Shewanella Piezotolerans in Complex with Fmn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca601

b:56.7
occ:1.00
O A:HOH869 2.5 24.3 1.0
O A:HIS271 2.6 26.2 1.0
OE2 A:GLU265 2.9 27.3 1.0
O A:HOH811 3.1 50.6 1.0
C1' A:FMN600 3.4 23.7 1.0
C A:HIS271 3.6 24.9 1.0
N A:HIS271 3.6 26.5 1.0
CD A:GLU265 3.6 31.9 1.0
O A:GLY269 3.6 25.7 1.0
OE1 A:GLU265 3.7 28.9 1.0
OG A:SER268 3.8 26.6 1.0
N10 A:FMN600 3.8 28.2 1.0
N1 A:FMN600 3.9 25.9 1.0
CA A:HIS271 3.9 28.2 1.0
CB A:HIS271 3.9 29.1 1.0
C10 A:FMN600 4.0 27.2 1.0
C A:GLY270 4.3 26.2 1.0
O A:HOH907 4.4 38.6 1.0
C9A A:FMN600 4.6 26.1 1.0
CA A:GLY270 4.7 26.8 1.0
C A:GLY269 4.8 22.7 1.0
C2 A:FMN600 4.8 31.2 1.0
O A:HOH769 4.8 27.7 1.0
C2' A:FMN600 4.8 25.1 1.0
N A:THR272 4.8 21.7 1.0
CB A:SER268 4.9 26.7 1.0
CG A:GLU265 4.9 25.1 1.0
O3' A:FMN600 5.0 24.3 1.0
C4A A:FMN600 5.0 28.6 1.0

Calcium binding site 2 out of 2 in 6lkc

Go back to Calcium Binding Sites List in 6lkc
Calcium binding site 2 out of 2 in the Crystal Structure of Pfad From Shewanella Piezotolerans in Complex with Fmn


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Pfad From Shewanella Piezotolerans in Complex with Fmn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca601

b:54.4
occ:1.00
O B:HOH894 2.7 27.9 1.0
O B:HIS271 2.7 29.5 1.0
OE2 B:GLU265 2.8 27.7 1.0
O B:HOH839 3.3 42.6 1.0
OG B:SER268 3.4 27.0 1.0
C1' B:FMN600 3.4 26.7 1.0
O B:GLY269 3.5 25.2 1.0
CD B:GLU265 3.6 28.6 1.0
N B:HIS271 3.7 29.0 1.0
C B:HIS271 3.7 31.0 1.0
OE1 B:GLU265 3.8 31.5 1.0
N10 B:FMN600 3.9 28.5 1.0
CA B:HIS271 4.1 28.1 1.0
CB B:HIS271 4.1 25.1 1.0
N1 B:FMN600 4.2 26.3 1.0
C10 B:FMN600 4.3 28.7 1.0
C B:GLY270 4.4 27.2 1.0
CB B:SER268 4.5 25.9 1.0
O B:HOH940 4.6 53.6 1.0
O3' B:FMN600 4.6 25.5 1.0
O B:HOH730 4.6 25.0 1.0
C9A B:FMN600 4.7 29.2 1.0
C B:GLY269 4.7 22.1 1.0
CA B:GLY270 4.7 23.4 1.0
C2' B:FMN600 4.8 26.5 1.0
C4' B:FMN600 4.8 28.3 1.0
CG B:GLU265 4.8 25.7 1.0
N B:THR272 5.0 25.2 1.0
C9 B:FMN600 5.0 26.9 1.0
C3' B:FMN600 5.0 25.9 1.0

Reference:

M.L.Zhang, H.D.Zhang, Q.Li, S.S.Meng, L.J.Guo, L.He, J.Z.Huang, L.Li. Structural Insight Into the Enoyl Reduction in the Biosynthesis of Long-Chain Polyunsaturated Fatty Acid in Shewanella Piezotolerans To Be Published.
Page generated: Sun Jan 24 09:26:13 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy