Calcium in PDB 6lzu: F411A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co-Crystalized with Chitobiose.

The structure of F411A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co-Crystalized with Chitobiose., PDB code: 6lzu was solved by Y.Kitaoku, P.Ubonbal, L.T.Tran, R.C.Robinson, W.Suginta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.15 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	62.317, 57.231, 82.017, 90, 100.49, 90
R / Rfree (%)	18.6 / 23.4

The structure of F411A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co-Crystalized with Chitobiose. also contains other interesting chemical elements:

Chlorine	(Cl)	1 atom
Magnesium	(Mg)	1 atom

The binding sites of Calcium atom in the F411A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co-Crystalized with Chitobiose. (pdb code 6lzu). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the F411A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co-Crystalized with Chitobiose., PDB code: 6lzu:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the F411A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co-Crystalized with Chitobiose.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of F411A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co-Crystalized with Chitobiose. within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca606 b:16.1 occ:1.00 OD1 A:ASN340 2.3 16.8 1.0 O A:PHE344 2.3 11.6 1.0 OD1 A:ASP338 2.4 15.5 1.0 OD1 A:ASP342 2.4 18.9 1.0 O A:HOH704 2.4 17.5 1.0 OD2 A:ASP346 2.6 16.2 1.0 OD1 A:ASP346 2.8 21.3 1.0 CG A:ASP346 3.0 17.4 1.0 CG A:ASP342 3.3 21.3 1.0 CG A:ASP338 3.3 18.9 1.0 CG A:ASN340 3.4 21.0 1.0 C A:PHE344 3.5 17.6 1.0 OD2 A:ASP342 3.6 20.7 1.0 OG A:SER352 4.0 23.8 1.0 CB A:ASP338 4.0 18.0 1.0 ND2 A:ASN340 4.1 22.6 1.0 N A:PHE344 4.1 14.8 1.0 CA A:ASP338 4.1 13.6 1.0 N A:ASN340 4.2 17.7 1.0 CA A:PHE344 4.2 19.1 1.0 OD2 A:ASP338 4.2 19.5 1.0 N A:VAL339 4.3 15.4 1.0 O A:HOH803 4.3 15.3 1.0 C A:VAL345 4.3 15.4 1.0 CB A:ASP346 4.4 16.0 1.0 CB A:PHE344 4.5 14.8 1.0 N A:ASP346 4.5 13.8 1.0 O A:VAL345 4.5 15.8 1.0 N A:VAL345 4.5 11.5 1.0 CB A:ASP342 4.5 21.0 1.0 N A:ASP342 4.6 19.0 1.0 C A:ASP338 4.6 16.5 1.0 CB A:ASN340 4.6 15.6 1.0 CA A:VAL345 4.7 14.3 1.0 CA A:ASN340 4.7 13.1 1.0 C A:ASN340 4.8 17.0 1.0 N A:GLY343 4.9 19.6 1.0 N A:LYS341 4.9 18.1 1.0 CA A:ASP346 4.9 14.1 1.0 CA A:ASP342 5.0 19.2 1.0

Calcium binding site 2 out of 2 in the F411A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co-Crystalized with Chitobiose.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of F411A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co-Crystalized with Chitobiose. within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca607 b:26.3 occ:1.00 O A:HOH703 2.3 21.9 1.0 O A:LEU524 2.4 19.2 1.0 O A:HOH825 2.4 22.8 1.0 O A:HOH930 2.4 23.1 1.0 O A:ASN190 2.4 23.4 1.0 OD1 A:ASN190 2.5 27.7 1.0 O A:HOH917 2.6 28.7 1.0 C A:ASN190 3.5 29.3 1.0 C A:LEU524 3.6 18.5 1.0 CG A:ASN190 3.6 21.5 1.0 CA A:ASN190 3.9 24.6 1.0 OD2 A:ASP192 4.2 41.5 1.0 CB A:ASN190 4.4 22.2 1.0 CA A:ASP525 4.4 15.9 1.0 N A:ASP525 4.4 16.1 1.0 CA A:LEU524 4.6 15.3 1.0 ND2 A:ASN190 4.6 23.9 1.0 OD1 A:ASP525 4.6 24.9 1.0 N A:LEU191 4.6 28.1 1.0 O A:HOH724 4.7 20.9 1.0 CB A:LEU524 4.8 18.2 1.0 CG A:ASP192 4.8 33.4 1.0 C A:ASP525 5.0 15.9 1.0

Y.Kitaoku, P.Ubonbal, L.T.Tran, R.C.Robinson, W.Suginta. Structural Insight Into Chitin-Specific Solute-Binding Protein From Vibrio Harveyi To Be Published.