Calcium in PDB 6m3s: Dimeric Isocitrate Dehydrogenase From Xanthomonas Campestris Pv. Campestris 8004

All present enzymatic activity of Dimeric Isocitrate Dehydrogenase From Xanthomonas Campestris Pv. Campestris 8004:
1.1.1.41;

The structure of Dimeric Isocitrate Dehydrogenase From Xanthomonas Campestris Pv. Campestris 8004, PDB code: 6m3s was solved by G.P.Zhu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.33 / 2.30
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	143.735, 143.735, 65.289, 90, 90, 120
R / Rfree (%)	17.5 / 22.5

The binding sites of Calcium atom in the Dimeric Isocitrate Dehydrogenase From Xanthomonas Campestris Pv. Campestris 8004 (pdb code 6m3s). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Dimeric Isocitrate Dehydrogenase From Xanthomonas Campestris Pv. Campestris 8004, PDB code: 6m3s:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Dimeric Isocitrate Dehydrogenase From Xanthomonas Campestris Pv. Campestris 8004


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Dimeric Isocitrate Dehydrogenase From Xanthomonas Campestris Pv. Campestris 8004 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca402 b:53.3 occ:1.00 CA A:ICA402 0.0 53.3 1.0 OD1 A:ASP231 2.3 45.1 1.0 O7 A:ICA402 2.4 46.0 1.0 O A:HOH549 2.5 43.5 1.0 O2 A:ICA402 2.9 64.7 1.0 CG A:ASP231 3.1 41.8 1.0 C2 A:ICA402 3.3 61.7 1.0 C1 A:ICA402 3.3 57.8 1.0 OD2 A:ASP231 3.3 48.4 1.0 OD1 A:ASP235 3.8 52.5 1.0 C5N A:NAD401 4.2 35.2 1.0 CG A:ASP235 4.2 50.7 1.0 O1 A:ICA402 4.3 55.2 1.0 O A:HOH582 4.4 39.0 1.0 O6 A:ICA402 4.4 85.5 1.0 O A:VAL262 4.4 30.0 1.0 O A:ASP231 4.5 29.1 1.0 NH1 A:ARG96 4.5 30.7 1.0 OD2 A:ASP235 4.5 49.2 1.0 CB A:ASP231 4.5 37.5 1.0 C3 A:ICA402 4.6 62.5 1.0 C6 A:ICA402 4.7 75.0 1.0 C4N A:NAD401 4.7 36.7 1.0 O A:HOH543 4.7 41.3 1.0 CA A:ASP231 4.8 33.0 1.0 C A:ASP231 4.9 32.2 1.0

Calcium binding site 2 out of 2 in the Dimeric Isocitrate Dehydrogenase From Xanthomonas Campestris Pv. Campestris 8004


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Dimeric Isocitrate Dehydrogenase From Xanthomonas Campestris Pv. Campestris 8004 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca402 b:53.5 occ:1.00 CA B:ICA402 0.0 53.5 1.0 OD1 B:ASP231 2.3 46.0 1.0 O7 B:ICA402 2.4 59.2 1.0 OD1 B:ASP235 2.5 49.1 1.0 O B:HOH562 2.7 35.5 1.0 O1 B:ICA402 2.7 54.5 1.0 CG B:ASP231 3.1 42.3 1.0 C1 B:ICA402 3.3 60.3 1.0 C2 B:ICA402 3.3 60.1 1.0 OD2 B:ASP231 3.3 47.2 1.0 CG B:ASP235 3.7 39.5 1.0 O B:ASP231 4.1 34.0 1.0 NH1 B:ARG96 4.1 33.4 1.0 OD2 B:ASP235 4.2 38.9 1.0 C5N B:NAD401 4.4 34.1 1.0 O B:VAL262 4.4 28.2 1.0 O2 B:ICA402 4.4 61.7 1.0 CB B:ASP231 4.4 37.5 1.0 C3 B:ICA402 4.6 58.6 1.0 CA B:ASP231 4.6 32.3 1.0 C B:ASP231 4.6 32.3 1.0 O B:HOH560 4.7 33.6 1.0 C6 B:ICA402 4.7 62.7 1.0 CG1 B:VAL262 4.7 30.7 1.0 CB B:ASP235 4.8 35.6 1.0 C4N B:NAD401 4.8 34.3 1.0 O5 B:ICA402 4.9 54.2 1.0 O6 B:ICA402 5.0 73.8 1.0

G.P.Zhu, G.P.Zhu. N/A N/A.