Calcium in PDB 6m8n: Endo-Fucoidan Hydrolase P5AFCNA From Glycoside Hydrolase Family 107

The structure of Endo-Fucoidan Hydrolase P5AFCNA From Glycoside Hydrolase Family 107, PDB code: 6m8n was solved by A.B.Boraston, C.J.Vickers, K.Abe, O.Salama-Alber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.71 / 1.55
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	97.455, 97.455, 96.684, 90.00, 90.00, 120.00
R / Rfree (%)	15.9 / 18.1

The binding sites of Calcium atom in the Endo-Fucoidan Hydrolase P5AFCNA From Glycoside Hydrolase Family 107 (pdb code 6m8n). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Endo-Fucoidan Hydrolase P5AFCNA From Glycoside Hydrolase Family 107, PDB code: 6m8n:

Calcium binding site 1 out of 1 in the Endo-Fucoidan Hydrolase P5AFCNA From Glycoside Hydrolase Family 107


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Endo-Fucoidan Hydrolase P5AFCNA From Glycoside Hydrolase Family 107 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca502 b:28.0 occ:1.00 O A:HOH883 3.0 26.7 1.0 NZ A:LYS259 3.1 21.4 1.0 N A:LYS259 3.2 13.0 1.0 NE A:ARG282 3.4 48.5 1.0 NH1 A:ARG282 3.6 38.7 1.0 CA A:TYR258 3.7 14.3 1.0 CG A:LYS259 3.8 14.6 1.0 CB A:ARG282 3.8 31.4 1.0 CB A:LYS259 3.8 14.0 1.0 CZ A:ARG282 3.9 49.4 1.0 CG A:ARG282 3.9 38.7 1.0 CB A:TYR258 4.0 13.2 1.0 C A:TYR258 4.0 13.3 1.0 CE A:LYS259 4.1 17.3 1.0 CG2 A:THR278 4.1 14.0 1.0 CA A:LYS259 4.1 12.2 1.0 O A:HOH657 4.1 41.1 1.0 CD A:ARG282 4.2 43.1 1.0 CD A:LYS259 4.5 17.1 1.0 O A:ASP257 4.6 17.5 1.0 O A:LYS259 4.8 13.8 1.0 C A:LYS259 4.9 12.3 1.0 O A:HOH762 4.9 31.2 1.0 N A:TYR258 5.0 14.2 1.0

C.Vickers, F.Liu, K.Abe, O.Salama-Alber, M.Jenkins, C.M.K.Springate, J.E.Burke, S.G.Withers, A.B.Boraston. Endo-Fucoidan Hydrolases From Glycoside Hydrolase Family 107 (GH107) Display Structural and Mechanistic Similarities to Alpha-L-Fucosidases From GH29. J. Biol. Chem. V. 293 18296 2018.
ISSN: ESSN 1083-351X
PubMed: 30282808
DOI: 10.1074/JBC.RA118.005134