Calcium in PDB 6mjp: Lptb(E163Q)Fgc From Vibrio Cholerae

The structure of Lptb(E163Q)Fgc From Vibrio Cholerae, PDB code: 6mjp was solved by T.W.Owens, D.Kahne, A.C.Kruse, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.27 / 2.85
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	167.354, 80.729, 202.992, 90.00, 112.18, 90.00
R / Rfree (%)	24.2 / 29.2

The structure of Lptb(E163Q)Fgc From Vibrio Cholerae also contains other interesting chemical elements:

Chlorine

(Cl)

4 atoms

The binding sites of Calcium atom in the Lptb(E163Q)Fgc From Vibrio Cholerae (pdb code 6mjp). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Lptb(E163Q)Fgc From Vibrio Cholerae, PDB code: 6mjp:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Lptb(E163Q)Fgc From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Lptb(E163Q)Fgc From Vibrio Cholerae within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca303 b:0.2 occ:1.00 OD2 A:ASP116 1.9 0.5 1.0 CG A:ASP116 2.5 0.8 1.0 OE1 A:GLU112 2.6 0.4 1.0 OD1 A:ASP116 2.6 0.2 1.0 O A:HOH424 2.7 0.8 1.0 CD A:GLU112 3.4 97.9 1.0 CG A:GLU112 3.5 88.6 1.0 CB A:ASP116 3.9 78.9 1.0 O A:GLU112 4.1 84.0 1.0 OE2 A:GLU112 4.6 0.2 1.0 CA A:ASP116 4.7 74.5 1.0 CB A:GLU112 4.9 85.4 1.0 C A:GLU112 4.9 81.1 1.0 NE2 A:GLN115 5.0 0.7 1.0

Calcium binding site 2 out of 2 in the Lptb(E163Q)Fgc From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Lptb(E163Q)Fgc From Vibrio Cholerae within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca304 b:98.7 occ:1.00 OD1 B:ASN196 2.3 0.4 1.0 OD1 A:ASN196 2.3 0.9 1.0 O B:HOH406 3.1 57.3 1.0 CG B:ASN196 3.4 97.1 1.0 CG A:ASN196 3.5 89.7 1.0 ND2 B:ASN196 4.2 74.0 1.0 O A:HOH416 4.3 77.7 1.0 OE2 A:GLU199 4.3 87.0 1.0 CB A:ASN196 4.3 62.9 1.0 CB B:ASN196 4.4 79.1 1.0 ND2 A:ASN196 4.5 92.0 1.0 CL A:CL305 4.5 0.6 1.0 O B:HOH416 4.5 67.6 1.0 OE2 B:GLU199 4.5 0.1 1.0 OE1 B:GLU199 4.7 0.2 1.0 CA A:ASN196 4.7 59.3 1.0 OE1 A:GLU199 4.7 97.5 1.0 CA B:ASN196 4.9 68.5 1.0 CD A:GLU199 4.9 92.7 1.0

T.W.Owens, R.J.Taylor, K.S.Pahil, B.R.Bertani, N.Ruiz, A.C.Kruse, D.Kahne. Structural Basis of Unidirectional Export of Lipopolysaccharide to the Cell Surface. Nature V. 567 550 2019.
ISSN: ESSN 1476-4687
PubMed: 30894747
DOI: 10.1038/S41586-019-1039-0