Atomistry » Calcium » PDB 6m4m-6mr8 » 6mm2
Atomistry »
  Calcium »
    PDB 6m4m-6mr8 »
      6mm2 »

Calcium in PDB 6mm2: Carbon Regulatory Pii-Like Protein Sbtb From Cyanobium Sp. 7001 Bound to Atp and Calcium

Protein crystallography data

The structure of Carbon Regulatory Pii-Like Protein Sbtb From Cyanobium Sp. 7001 Bound to Atp and Calcium, PDB code: 6mm2 was solved by J.A.Kaczmarski, C.Jackson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 16.04 / 1.04
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 52.058, 52.058, 95.214, 90.00, 90.00, 120.00
R / Rfree (%) 14.5 / 16.3

Other elements in 6mm2:

The structure of Carbon Regulatory Pii-Like Protein Sbtb From Cyanobium Sp. 7001 Bound to Atp and Calcium also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Carbon Regulatory Pii-Like Protein Sbtb From Cyanobium Sp. 7001 Bound to Atp and Calcium (pdb code 6mm2). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Carbon Regulatory Pii-Like Protein Sbtb From Cyanobium Sp. 7001 Bound to Atp and Calcium, PDB code: 6mm2:

Calcium binding site 1 out of 1 in 6mm2

Go back to Calcium Binding Sites List in 6mm2
Calcium binding site 1 out of 1 in the Carbon Regulatory Pii-Like Protein Sbtb From Cyanobium Sp. 7001 Bound to Atp and Calcium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Carbon Regulatory Pii-Like Protein Sbtb From Cyanobium Sp. 7001 Bound to Atp and Calcium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca202

b:20.4
occ:1.00
O2B A:ATP201 2.3 18.6 1.0
O A:GLY41 2.4 19.1 1.0
OD1 A:ASN44 2.4 25.1 1.0
O1G A:ATP201 2.4 17.4 1.0
OE2 A:GLU50 2.5 19.9 1.0
O A:HOH349 2.5 26.1 1.0
OE1 A:GLU50 2.6 27.5 1.0
CD A:GLU50 2.9 25.0 1.0
H A:GLY41 3.2 19.5 1.0
HA A:ASN44 3.4 26.3 1.0
C A:GLY41 3.4 17.7 1.0
PG A:ATP201 3.5 16.1 1.0
H A:ASN44 3.5 25.3 1.0
CG A:ASN44 3.6 26.0 1.0
PB A:ATP201 3.6 18.1 1.0
HA A:SER42 3.9 24.4 1.0
O2G A:ATP201 3.9 16.9 1.0
O3B A:ATP201 3.9 16.9 1.0
N A:GLY41 4.0 16.2 1.0
CA A:ASN44 4.1 21.9 1.0
N A:ASN44 4.1 21.1 1.0
HE2 A:TYR57 4.1 26.9 1.0
CA A:GLY41 4.2 17.2 1.0
N A:SER42 4.2 19.1 1.0
CB A:ASN44 4.4 24.4 1.0
CG A:GLU50 4.4 24.7 1.0
CA A:SER42 4.4 20.3 1.0
O1B A:ATP201 4.5 18.7 1.0
HA3 A:GLY41 4.5 20.6 1.0
HD21 A:ASN44 4.5 34.8 1.0
ND2 A:ASN44 4.5 29.0 1.0
O3A A:ATP201 4.6 19.2 1.0
HB3 A:ASN44 4.7 29.4 1.0
HB3 A:GLU40 4.7 21.2 1.0
HG A:SER54 4.7 44.0 1.0
C A:SER42 4.7 20.9 1.0
HG2 A:GLU50 4.8 29.7 1.0
H A:ARG43 4.8 25.3 1.0
HG3 A:GLU50 4.8 29.7 1.0
CE2 A:TYR57 4.9 22.4 1.0
O3G A:ATP201 4.9 16.1 1.0
HA A:GLU40 4.9 18.4 1.0
N A:ARG43 4.9 21.1 1.0
HH A:TYR57 4.9 32.1 1.0
H A:SER42 5.0 22.9 1.0

Reference:

C.Jackson, J.A.Kaczmarski, D.Price. Structure and Function of Sbtb From Cyanobium Sp. 7001 Biorxiv 2019.
Page generated: Tue Jul 16 11:24:19 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy