Calcium in PDB 6mqr: Vaccine-Elicited Nhp Fp-Targeting Neutralizing Antibody 0PV-A.01 in Complex with Fp (Residue 512-519)

The structure of Vaccine-Elicited Nhp Fp-Targeting Neutralizing Antibody 0PV-A.01 in Complex with Fp (Residue 512-519), PDB code: 6mqr was solved by K.Xu, Y.Wang, P.D.Kwong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.56 / 2.45
Space group	I 2 3
Cell size a, b, c (Å), α, β, γ (°)	159.250, 159.250, 159.250, 90.00, 90.00, 90.00
R / Rfree (%)	17.5 / 20.9

The binding sites of Calcium atom in the Vaccine-Elicited Nhp Fp-Targeting Neutralizing Antibody 0PV-A.01 in Complex with Fp (Residue 512-519) (pdb code 6mqr). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Vaccine-Elicited Nhp Fp-Targeting Neutralizing Antibody 0PV-A.01 in Complex with Fp (Residue 512-519), PDB code: 6mqr:

Calcium binding site 1 out of 1 in the Vaccine-Elicited Nhp Fp-Targeting Neutralizing Antibody 0PV-A.01 in Complex with Fp (Residue 512-519)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Vaccine-Elicited Nhp Fp-Targeting Neutralizing Antibody 0PV-A.01 in Complex with Fp (Residue 512-519) within 5.0Å range: probe atom residue distance (Å) B Occ L:Ca302 b:51.8 occ:1.00 OD1 L:ASN137 2.3 52.5 1.0 NE2 H:HIS164 2.5 52.9 1.0 ND2 L:ASN138 2.6 70.5 1.0 OD1 L:ASN138 2.8 56.4 1.0 CG L:ASN138 3.0 56.4 1.0 CG L:ASN137 3.3 53.2 1.0 CD2 H:HIS164 3.4 46.0 1.0 ND2 L:ASN137 3.4 52.5 1.0 CE1 H:HIS164 3.5 50.8 1.0 OG1 H:THR183 3.6 50.4 1.0 CA H:GLY162 3.9 49.3 1.0 O H:GLY162 3.9 50.5 1.0 C H:GLY162 4.3 53.3 1.0 CB L:ASN138 4.5 51.6 1.0 CG H:HIS164 4.5 47.4 1.0 ND1 H:HIS164 4.6 48.6 1.0 CB L:ASN137 4.8 42.4 1.0 CB H:THR183 4.8 42.2 1.0 OG L:SER174 4.9 43.4 1.0 CG2 H:THR183 5.0 36.4 1.0 N H:GLY162 5.0 49.2 1.0

R.Kong, H.Duan, Z.Sheng, K.Xu, P.Acharya, X.Chen, C.Cheng, A.S.Dingens, J.Gorman, M.Sastry, C.H.Shen, B.Zhang, T.Zhou, G.Y.Chuang, C.W.Chao, Y.Gu, A.J.Jafari, M.K.Louder, S.O'dell, A.P.Rowshan, E.G.Viox, Y.Wang, C.W.Choi, M.M.Corcoran, A.R.Corrigan, V.P.Dandey, E.T.Eng, H.Geng, K.E.Foulds, Y.Guo, Y.D.Kwon, B.Lin, K.Liu, R.D.Mason, M.C.Nason, T.Y.Ohr, L.Ou, R.Rawi, E.K.Sarfo, A.Schon, J.P.Todd, S.Wang, H.Wei, W.Wu, J.C.Mullikin, R.T.Bailer, N.A.Doria-Rose, G.B.Karlsson Hedestam, D.G.Scorpio, J.Overbaugh, J.D.Bloom, B.Carragher, C.S.Potter, L.Shapiro, P.D.Kwong, J.R.Mascola. Antibody Lineages with Vaccine-Induced Antigen-Binding Hotspots Develop Broad Hiv Neutralization. Cell V. 178 567 2019.
ISSN: ISSN 1097-4172
PubMed: 31348886
DOI: 10.1016/J.CELL.2019.06.030