Calcium in PDB 6mqr: Vaccine-Elicited Nhp Fp-Targeting Neutralizing Antibody 0PV-A.01 in Complex with Fp (Residue 512-519)

Protein crystallography data

The structure of Vaccine-Elicited Nhp Fp-Targeting Neutralizing Antibody 0PV-A.01 in Complex with Fp (Residue 512-519), PDB code: 6mqr was solved by K.Xu, Y.Wang, P.D.Kwong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.56 / 2.45
Space group I 2 3
Cell size a, b, c (Å), α, β, γ (°) 159.250, 159.250, 159.250, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 20.9

Calcium Binding Sites:

The binding sites of Calcium atom in the Vaccine-Elicited Nhp Fp-Targeting Neutralizing Antibody 0PV-A.01 in Complex with Fp (Residue 512-519) (pdb code 6mqr). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Vaccine-Elicited Nhp Fp-Targeting Neutralizing Antibody 0PV-A.01 in Complex with Fp (Residue 512-519), PDB code: 6mqr:

Calcium binding site 1 out of 1 in 6mqr

Go back to Calcium Binding Sites List in 6mqr
Calcium binding site 1 out of 1 in the Vaccine-Elicited Nhp Fp-Targeting Neutralizing Antibody 0PV-A.01 in Complex with Fp (Residue 512-519)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Vaccine-Elicited Nhp Fp-Targeting Neutralizing Antibody 0PV-A.01 in Complex with Fp (Residue 512-519) within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Ca302

b:51.8
occ:1.00
OD1 L:ASN137 2.3 52.5 1.0
NE2 H:HIS164 2.5 52.9 1.0
ND2 L:ASN138 2.6 70.5 1.0
OD1 L:ASN138 2.8 56.4 1.0
CG L:ASN138 3.0 56.4 1.0
CG L:ASN137 3.3 53.2 1.0
CD2 H:HIS164 3.4 46.0 1.0
ND2 L:ASN137 3.4 52.5 1.0
CE1 H:HIS164 3.5 50.8 1.0
OG1 H:THR183 3.6 50.4 1.0
CA H:GLY162 3.9 49.3 1.0
O H:GLY162 3.9 50.5 1.0
C H:GLY162 4.3 53.3 1.0
CB L:ASN138 4.5 51.6 1.0
CG H:HIS164 4.5 47.4 1.0
ND1 H:HIS164 4.6 48.6 1.0
CB L:ASN137 4.8 42.4 1.0
CB H:THR183 4.8 42.2 1.0
OG L:SER174 4.9 43.4 1.0
CG2 H:THR183 5.0 36.4 1.0
N H:GLY162 5.0 49.2 1.0

Reference:

R.Kong, H.Duan, Z.Sheng, K.Xu, P.Acharya, X.Chen, C.Cheng, A.S.Dingens, J.Gorman, M.Sastry, C.H.Shen, B.Zhang, T.Zhou, G.Y.Chuang, C.W.Chao, Y.Gu, A.J.Jafari, M.K.Louder, S.O'dell, A.P.Rowshan, E.G.Viox, Y.Wang, C.W.Choi, M.M.Corcoran, A.R.Corrigan, V.P.Dandey, E.T.Eng, H.Geng, K.E.Foulds, Y.Guo, Y.D.Kwon, B.Lin, K.Liu, R.D.Mason, M.C.Nason, T.Y.Ohr, L.Ou, R.Rawi, E.K.Sarfo, A.Schon, J.P.Todd, S.Wang, H.Wei, W.Wu, J.C.Mullikin, R.T.Bailer, N.A.Doria-Rose, G.B.Karlsson Hedestam, D.G.Scorpio, J.Overbaugh, J.D.Bloom, B.Carragher, C.S.Potter, L.Shapiro, P.D.Kwong, J.R.Mascola. Antibody Lineages with Vaccine-Induced Antigen-Binding Hotspots Develop Broad Hiv Neutralization. Cell V. 178 567 2019.
ISSN: ISSN 1097-4172
PubMed: 31348886
DOI: 10.1016/J.CELL.2019.06.030
Page generated: Sat Dec 12 07:05:13 2020

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