Calcium in PDB 6mrm: Red Clover Necrotic Mosaic Virus

The binding sites of Calcium atom in the Red Clover Necrotic Mosaic Virus (pdb code 6mrm). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Red Clover Necrotic Mosaic Virus, PDB code: 6mrm:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Red Clover Necrotic Mosaic Virus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Red Clover Necrotic Mosaic Virus within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:30.0 occ:1.00 OD1 B:ASP97 2.1 98.9 1.0 NE2 B:GLN211 2.2 96.0 1.0 OD2 A:ASP127 2.3 0.3 1.0 OD1 A:ASP130 2.3 0.1 1.0 OD2 A:ASP130 2.6 0.1 1.0 CG A:ASP130 2.8 0.1 1.0 CG B:ASP97 2.8 98.9 1.0 OD2 B:ASP97 2.9 98.9 1.0 CD B:GLN211 3.0 96.0 1.0 OE1 B:GLN211 3.4 96.0 1.0 CG A:ASP127 3.5 0.3 1.0 OD2 B:ASP169 3.5 0.8 1.0 CG B:GLN211 4.1 96.0 1.0 CB B:ASP169 4.2 0.8 1.0 CB B:ASP97 4.2 98.9 1.0 CB A:ASP130 4.3 0.1 1.0 CB A:ASP127 4.3 0.3 1.0 CG B:ASP169 4.3 0.8 1.0 OD1 A:ASP127 4.4 0.3 1.0 O B:VAL167 4.8 96.6 1.0 CA B:ASP97 4.9 98.9 1.0 O B:TYR96 4.9 97.3 1.0

Calcium binding site 2 out of 3 in the Red Clover Necrotic Mosaic Virus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Red Clover Necrotic Mosaic Virus within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca402 b:30.0 occ:1.00 OD2 C:ASP127 1.7 0.0 1.0 OD2 C:ASP130 1.9 0.1 1.0 OD1 A:ASP97 2.1 0.6 1.0 NE2 A:GLN211 2.5 0.8 1.0 CG C:ASP130 2.6 0.1 1.0 OD1 C:ASP130 2.7 0.1 1.0 OD2 A:ASP169 2.7 0.3 1.0 CG C:ASP127 2.8 0.0 1.0 CG A:ASP97 2.8 0.6 1.0 OD2 A:ASP97 3.0 0.6 1.0 CD A:GLN211 3.2 0.8 1.0 CB C:ASP127 3.4 0.0 1.0 OE1 A:GLN211 3.7 0.8 1.0 OD1 C:ASP127 3.8 0.0 1.0 CG A:ASP169 3.8 0.3 1.0 CB C:ASP130 4.1 0.1 1.0 CG A:GLN211 4.1 0.8 1.0 CB A:ASP97 4.2 0.6 1.0 OH C:TYR142 4.6 0.5 1.0 CB A:ASP169 4.6 0.3 1.0 CA C:ASP127 4.7 0.0 1.0 OD1 A:ASP169 4.7 0.3 1.0 CA A:ASP97 4.8 0.6 1.0 N C:ASP127 4.8 0.0 1.0

Calcium binding site 3 out of 3 in the Red Clover Necrotic Mosaic Virus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Red Clover Necrotic Mosaic Virus within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca401 b:30.0 occ:1.00 NE2 C:GLN211 1.5 98.8 1.0 OD2 B:ASP130 1.8 0.5 1.0 OD2 B:ASP127 2.0 0.2 1.0 OD1 B:ASP130 2.0 0.5 1.0 CG B:ASP130 2.2 0.5 1.0 OD1 C:ASP97 2.3 99.0 1.0 CD C:GLN211 2.7 98.8 1.0 CG B:ASP127 3.0 0.2 1.0 CG C:ASP97 3.2 99.0 1.0 CG C:GLN211 3.4 98.8 1.0 OD2 C:ASP97 3.4 99.0 1.0 CB B:ASP127 3.6 0.2 1.0 CB B:ASP130 3.7 0.5 1.0 OE1 C:GLN211 3.7 98.8 1.0 OD2 C:ASP169 4.0 1.0 1.0 OD1 B:ASP127 4.1 0.2 1.0 CA B:ASP130 4.5 0.5 1.0 CB C:ASP97 4.6 99.0 1.0 CB C:ASP169 4.6 1.0 1.0 CB C:GLN211 4.8 98.8 1.0 CG C:ASP169 4.8 1.0 1.0 N B:ASP130 4.8 0.5 1.0 CA B:ASP127 5.0 0.2 1.0

M.B.Sherman, R.Guenther, R.Reade, D.Rochon, T.Sit, T.J.Smith. Near Atomic Resolution Cryo-Electron Microscopy Structures of Cucumber Leaf Spot Virus and Red Clover Necrotic Mosaic Virus; Evolutionary Divergence at the Icosahedral Three-Fold Axes. J.Virol. 2019.
ISSN: ESSN 1098-5514
PubMed: 31694952
DOI: 10.1128/JVI.01439-19