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Calcium in PDB 6mzz: Fluoroacetate Dehalogenase, Room Temperature Structure, Using First 1 Degree of Total 3 Degree Oscillation

Enzymatic activity of Fluoroacetate Dehalogenase, Room Temperature Structure, Using First 1 Degree of Total 3 Degree Oscillation

All present enzymatic activity of Fluoroacetate Dehalogenase, Room Temperature Structure, Using First 1 Degree of Total 3 Degree Oscillation:
3.8.1.3;

Protein crystallography data

The structure of Fluoroacetate Dehalogenase, Room Temperature Structure, Using First 1 Degree of Total 3 Degree Oscillation, PDB code: 6mzz was solved by A.D.Finke, J.L.Wierman, O.Pare-Labrosse, A.Sarrachini, J.Besaw, P.Mehrabi, S.M.Gruner, R.J.D.Miller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.55 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 41.600, 79.100, 83.800, 90.00, 103.00, 90.00
R / Rfree (%) 17.5 / 20.9

Calcium Binding Sites:

The binding sites of Calcium atom in the Fluoroacetate Dehalogenase, Room Temperature Structure, Using First 1 Degree of Total 3 Degree Oscillation (pdb code 6mzz). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Fluoroacetate Dehalogenase, Room Temperature Structure, Using First 1 Degree of Total 3 Degree Oscillation, PDB code: 6mzz:

Calcium binding site 1 out of 1 in 6mzz

Go back to Calcium Binding Sites List in 6mzz
Calcium binding site 1 out of 1 in the Fluoroacetate Dehalogenase, Room Temperature Structure, Using First 1 Degree of Total 3 Degree Oscillation


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Fluoroacetate Dehalogenase, Room Temperature Structure, Using First 1 Degree of Total 3 Degree Oscillation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca401

b:58.4
occ:1.00
 OD2 B:ASP173 2.4 40.5 1.0
O A:HOH403 2.8 53.2 1.0
O A:HOH425 2.8 45.3 1.0
CG B:ASP173 3.2 41.4 1.0
OD1 B:ASP173 3.9 40.1 1.0
CB B:ASP173 4.0 38.5 1.0
OD1 A:ASN168 4.3 34.0 1.0
CG A:ASN168 4.3 36.5 1.0
O A:HOH511 4.4 42.3 1.0
CB A:ASN168 4.6 28.9 1.0
ND2 A:ASN168 4.8 34.1 1.0
O A:ASN168 4.8 33.5 1.0
O B:GLY172 4.9 53.8 1.0
CA A:ASN168 5.0 30.9 1.0

Reference:

J.L.Wierman, O.Pare-Labrosse, A.Sarracini, J.E.Besaw, M.J.Cook, S.Oghbaey, H.Daoud, P.Mehrabi, I.Kriksunov, A.Kuo, D.J.Schuller, S.Smith, O.P.Ernst, D.M.E.Szebenyi, S.M.Gruner, R.J.D.Miller, A.D.Finke. Fixed-Target Serial Oscillation Crystallography at Room Temperature. Iucrj V. 6 305 2019.
ISSN: ESSN 2052-2525
PubMed: 30867928
DOI: 10.1107/S2052252519001453
Page generated: Tue Jul 16 11:30:11 2024

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