Calcium in PDB 6n22: Crystal Structure of Mouse Protocadherin-15 EC1-2 Bap

The structure of Crystal Structure of Mouse Protocadherin-15 EC1-2 Bap, PDB code: 6n22 was solved by Y.Narui, M.Sotomayor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.86 / 2.40
Space group	P 64
Cell size a, b, c (Å), α, β, γ (°)	99.616, 99.616, 58.560, 90.00, 90.00, 120.00
R / Rfree (%)	17 / 23.3

The binding sites of Calcium atom in the Crystal Structure of Mouse Protocadherin-15 EC1-2 Bap (pdb code 6n22). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Crystal Structure of Mouse Protocadherin-15 EC1-2 Bap, PDB code: 6n22:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Crystal Structure of Mouse Protocadherin-15 EC1-2 Bap


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Mouse Protocadherin-15 EC1-2 Bap within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1001 b:43.5 occ:1.00 OD2 A:ASP85 2.3 39.7 1.0 OD1 A:ASP83 2.3 43.6 1.0 OD2 A:ASP121 2.4 43.7 1.0 O A:HOH1139 2.4 39.6 1.0 OE1 A:GLU27 2.4 41.9 1.0 OE2 A:GLU28 2.7 63.7 1.0 CG A:ASP121 3.2 39.4 1.0 OD1 A:ASP121 3.2 38.9 1.0 CD A:GLU27 3.3 41.0 1.0 CG A:ASP85 3.4 39.7 1.0 CG A:ASP83 3.4 45.2 1.0 CD A:GLU28 3.6 60.3 1.0 OE2 A:GLU27 3.8 39.1 1.0 CA A:CA1002 3.9 35.8 1.0 CB A:ASP85 4.0 42.2 1.0 ND2 A:ASN122 4.1 43.4 1.0 OD2 A:ASP83 4.1 46.4 1.0 CG A:GLU28 4.2 55.9 1.0 N A:ASP85 4.4 43.8 1.0 OD1 A:ASP85 4.4 38.1 1.0 CB A:ASP83 4.4 44.9 1.0 OE1 A:GLU28 4.5 64.0 1.0 N A:ARG84 4.5 40.6 1.0 CG A:GLU27 4.5 42.6 1.0 CA A:ASP83 4.5 43.8 1.0 CB A:ASP121 4.6 37.1 1.0 CA A:ASP85 4.8 44.5 1.0 C A:ASP83 5.0 42.7 1.0

Calcium binding site 2 out of 3 in the Crystal Structure of Mouse Protocadherin-15 EC1-2 Bap


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Mouse Protocadherin-15 EC1-2 Bap within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1002 b:35.8 occ:1.00 OD1 A:ASP118 2.3 35.4 1.0 OE2 A:GLU27 2.3 39.1 1.0 O A:ARG119 2.4 43.1 1.0 OD2 A:ASP85 2.4 39.7 1.0 OD1 A:ASP121 2.4 38.9 1.0 OD1 A:ASP159 2.4 36.6 1.0 OD1 A:ASP85 2.5 38.1 1.0 CG A:ASP85 2.8 39.7 1.0 CD A:GLU27 3.3 41.0 1.0 CG A:ASP159 3.4 35.6 1.0 CG A:ASP118 3.4 41.0 1.0 C A:ARG119 3.6 43.8 1.0 CG A:ASP121 3.6 39.4 1.0 N A:ARG119 3.7 43.1 1.0 OE1 A:GLU27 3.7 41.9 1.0 CB A:ASP159 3.9 33.6 1.0 CA A:CA1001 3.9 43.5 1.0 OD2 A:ASP118 4.0 41.2 1.0 ND2 A:ASN122 4.0 43.4 1.0 OD2 A:ASP121 4.2 43.7 1.0 CA A:ARG119 4.2 46.4 1.0 CA A:ASP159 4.2 36.5 1.0 N A:ASP121 4.3 38.5 1.0 CB A:ASP85 4.3 42.2 1.0 O A:HOH1115 4.3 51.6 1.0 OD2 A:ASP159 4.3 38.1 1.0 C A:ASP118 4.5 40.1 1.0 CB A:ASP118 4.5 37.8 1.0 CA A:ASP118 4.5 40.9 1.0 N A:ASN120 4.7 41.0 1.0 CG A:GLU27 4.7 42.6 1.0 CB A:ASP121 4.7 37.1 1.0 CB A:ARG119 4.8 51.2 1.0 CA A:ASN120 5.0 39.6 1.0 CA A:ASP121 5.0 39.5 1.0

Calcium binding site 3 out of 3 in the Crystal Structure of Mouse Protocadherin-15 EC1-2 Bap


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Mouse Protocadherin-15 EC1-2 Bap within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1003 b:35.9 occ:1.00 O A:ASN122 2.2 35.7 1.0 OD2 A:ASP159 2.3 38.1 1.0 O A:ASN163 2.3 33.8 1.0 OD1 A:ASN120 2.4 38.4 1.0 OD2 A:ASP157 2.4 39.0 1.0 OD1 A:ASP157 2.5 41.2 1.0 OD2 A:ASP215 2.5 42.4 1.0 CG A:ASP157 2.7 40.1 1.0 CG A:ASP159 3.3 35.6 1.0 C A:ASN122 3.4 37.2 1.0 CG A:ASP215 3.4 39.1 1.0 C A:ASN163 3.5 36.2 1.0 CG A:ASN120 3.5 37.8 1.0 CB A:ASP215 3.8 41.3 1.0 CB A:ASP159 3.8 33.6 1.0 CA A:ASN122 4.2 40.4 1.0 ND2 A:ASN120 4.2 36.8 1.0 N A:ASN122 4.2 41.3 1.0 CB A:ASP157 4.2 40.9 1.0 CA A:ASN163 4.3 37.4 1.0 CB A:ASN163 4.3 37.6 1.0 N A:GLY164 4.4 37.3 1.0 N A:SER123 4.4 37.5 1.0 OD1 A:ASP159 4.4 36.6 1.0 CB A:ASN122 4.4 41.6 1.0 OD1 A:ASP215 4.5 41.3 1.0 CA A:GLY164 4.6 37.9 1.0 CA A:ASN120 4.7 39.6 1.0 CB A:ASN120 4.7 37.6 1.0 CA A:SER123 4.7 39.1 1.0 N A:ASP159 4.8 36.9 1.0 CA A:ASP159 4.9 36.5 1.0 C A:SER123 4.9 38.7 1.0 C A:ASN120 4.9 38.4 1.0 CD A:ARG224 5.0 51.4 1.0

Y.Narui, M.Sotomayor. Crystal Structure of Mouse Protocadherin-15 EC1-2 Bap To Be Published.