Calcium in PDB 6oes: Cryo-Em Structure of Mouse RAG1/2 Stc Complex (Without Nbd Domain)

All present enzymatic activity of Cryo-Em Structure of Mouse RAG1/2 Stc Complex (Without Nbd Domain):
2.3.2.27;

The structure of Cryo-Em Structure of Mouse RAG1/2 Stc Complex (Without Nbd Domain) also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Calcium atom in the Cryo-Em Structure of Mouse RAG1/2 Stc Complex (Without Nbd Domain) (pdb code 6oes). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Cryo-Em Structure of Mouse RAG1/2 Stc Complex (Without Nbd Domain), PDB code: 6oes:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Cryo-Em Structure of Mouse RAG1/2 Stc Complex (Without Nbd Domain)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Mouse RAG1/2 Stc Complex (Without Nbd Domain) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1101 b:31.6 occ:1.00 O A:GLY601 2.5 29.1 1.0 OP2 F:DC31 2.5 41.4 0.8 OD1 A:ASP600 2.6 31.8 1.0 CG A:ASP600 3.5 31.8 1.0 O3' F:DG30 3.6 28.7 1.0 P F:DC31 3.6 41.4 0.8 C A:GLY601 3.7 29.1 1.0 OD2 A:ASP600 3.9 31.8 1.0 C5' F:DC31 4.0 41.4 0.8 O5' F:DC31 4.3 41.4 0.8 NE2 A:GLN962 4.4 28.0 1.0 OP1 F:DG30 4.4 28.7 1.0 CA A:MET602 4.5 30.1 1.0 C4' F:DC31 4.5 41.4 0.8 N A:GLY601 4.5 29.1 1.0 N A:MET602 4.6 30.1 1.0 OE1 A:GLN962 4.6 28.0 1.0 CB A:ASP600 4.6 31.8 1.0 CA A:GLY601 4.7 29.1 1.0 ND2 A:ASN965 4.9 26.2 1.0 C A:ASP600 4.9 31.8 1.0 OP1 F:DC31 4.9 41.4 0.8 CD A:GLN962 5.0 28.0 1.0 C3' F:DG30 5.0 28.7 1.0 O3' J:DG16 5.0 39.4 0.8

Calcium binding site 2 out of 2 in the Cryo-Em Structure of Mouse RAG1/2 Stc Complex (Without Nbd Domain)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of Mouse RAG1/2 Stc Complex (Without Nbd Domain) within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca1101 b:32.0 occ:1.00 O C:GLY601 2.5 28.4 1.0 OP2 G:DC42 2.5 35.8 0.8 OD2 C:ASP600 2.6 30.1 1.0 CG C:ASP600 3.5 30.1 1.0 C C:GLY601 3.7 28.4 1.0 P G:DC42 3.7 35.8 0.8 OD1 C:ASP600 3.7 30.1 1.0 O3' G:DG41 3.8 29.5 1.0 C5' G:DC42 4.3 35.8 0.8 CA C:MET602 4.4 30.2 1.0 O5' G:DC42 4.5 35.8 0.8 C4' G:DC42 4.5 35.8 0.8 N C:MET602 4.5 30.2 1.0 OE1 C:GLN962 4.6 29.8 1.0 N C:GLY601 4.6 28.4 1.0 CA C:GLY601 4.7 28.4 1.0 CB C:ASP600 4.8 30.1 1.0 OP1 G:DC42 4.9 35.8 0.8 NE2 C:GLN962 5.0 29.8 1.0

X.Chen, Y.Cui, Z.H.Zhou, W.Yang, M.Gellert. Cryo-Em Structure of Mouse RAG1/2 Stc (Without Nbd Domain) To Be Published.