Calcium in PDB 6oet: Cryo-Em Structure of Mouse RAG1/2 Stc Complex

All present enzymatic activity of Cryo-Em Structure of Mouse RAG1/2 Stc Complex:
2.3.2.27;

The structure of Cryo-Em Structure of Mouse RAG1/2 Stc Complex also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Calcium atom in the Cryo-Em Structure of Mouse RAG1/2 Stc Complex (pdb code 6oet). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Cryo-Em Structure of Mouse RAG1/2 Stc Complex, PDB code: 6oet:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Cryo-Em Structure of Mouse RAG1/2 Stc Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Mouse RAG1/2 Stc Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1101 b:58.7 occ:1.00 OP2 F:DC31 2.4 61.7 0.8 O A:GLY601 2.4 50.5 1.0 OD1 A:ASP600 2.6 52.1 1.0 CG A:ASP600 3.3 52.1 1.0 P F:DC31 3.6 61.7 0.8 O3' F:DG30 3.6 46.7 1.0 C A:GLY601 3.6 50.5 1.0 OD2 A:ASP600 3.7 52.1 1.0 C5' F:DC31 3.9 61.7 0.8 NE2 A:GLN962 4.0 50.5 1.0 N A:GLY601 4.2 50.5 1.0 O5' F:DC31 4.3 61.7 0.8 CB A:ASP600 4.4 52.1 1.0 OP1 F:DG30 4.4 46.7 1.0 CA A:GLY601 4.5 50.5 1.0 N A:MET602 4.6 50.0 1.0 OE1 A:GLN962 4.6 50.5 1.0 ND2 A:ASN965 4.6 47.0 1.0 CA A:MET602 4.7 50.0 1.0 C A:ASP600 4.7 52.1 1.0 CD A:GLN962 4.8 50.5 1.0 OP1 F:DC31 4.8 61.7 0.8 C3' F:DG30 4.8 46.7 1.0 C4' F:DC31 4.8 61.7 0.8

Calcium binding site 2 out of 2 in the Cryo-Em Structure of Mouse RAG1/2 Stc Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of Mouse RAG1/2 Stc Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca1101 b:66.6 occ:1.00 O C:GLY601 2.5 49.9 1.0 OP2 G:DC42 2.5 59.7 0.8 OD2 C:ASP600 2.5 50.1 1.0 OD1 C:ASP600 2.8 50.1 1.0 CG C:ASP600 3.0 50.1 1.0 C C:GLY601 3.6 49.9 1.0 P G:DC42 3.8 59.7 0.8 O3' G:DG41 3.9 48.0 1.0 C5' G:DC42 4.3 59.7 0.8 CA C:MET602 4.4 50.0 1.0 N C:MET602 4.4 50.0 1.0 N C:GLY601 4.4 49.9 1.0 CB C:ASP600 4.5 50.1 1.0 O5' G:DC42 4.6 59.7 0.8 CA C:GLY601 4.6 49.9 1.0 C4' G:DC42 4.6 59.7 0.8 NE2 C:GLN962 4.6 48.5 1.0 C C:ASP600 4.8 50.1 1.0 OP1 G:DC42 4.9 59.7 0.8

X.Chen, Y.Cui, Z.H.Zhou, W.Yang, M.Gellert. Cryo-Em Structure of Mouse RAG1/2 Stc Complex To Be Published.