Calcium in PDB 6om1: Crystal Structure of An Atypical Integrin

The structure of Crystal Structure of An Atypical Integrin, PDB code: 6om1 was solved by J.C.Wang, T.A.Springer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.07 / 2.66
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	144.240, 55.070, 175.070, 90.37, 107.00, 90.01
R / Rfree (%)	24.8 / 28

The structure of Crystal Structure of An Atypical Integrin also contains other interesting chemical elements:

Magnesium

(Mg)

4 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20;

Binding sites:

The binding sites of Calcium atom in the Crystal Structure of An Atypical Integrin (pdb code 6om1). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 20 binding sites of Calcium where determined in the Crystal Structure of An Atypical Integrin, PDB code: 6om1:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 20 in the Crystal Structure of An Atypical Integrin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of An Atypical Integrin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca606 b:61.0 occ:1.00 OD1 A:ASP234 2.3 68.0 1.0 OD1 A:ASN232 2.3 57.8 1.0 O A:ILE236 2.3 55.6 1.0 OD1 A:ASP238 2.3 55.8 1.0 OD2 A:ASP238 2.4 54.1 1.0 OD1 A:ASP230 2.4 75.6 1.0 OD2 A:ASP234 2.5 66.2 1.0 CG A:ASP238 2.6 53.7 1.0 CG A:ASP234 2.6 67.5 1.0 CG A:ASN232 3.3 58.8 1.0 HD21 A:ASN232 3.3 76.4 1.0 HA A:ASP230 3.4 72.2 1.0 C A:ILE236 3.4 56.0 1.0 HB A:ILE236 3.4 79.7 1.0 H A:PHE231 3.5 63.5 1.0 CG A:ASP230 3.5 73.2 1.0 ND2 A:ASN232 3.7 63.4 1.0 H A:ASN232 3.7 66.3 1.0 H A:ASP234 3.7 80.5 1.0 H A:ILE236 3.8 77.7 1.0 H A:GLY258 3.9 75.4 1.0 HG22 A:ILE236 3.9 81.0 1.0 CB A:ASP238 4.0 52.0 1.0 CB A:ASP234 4.1 68.4 1.0 H A:ASP238 4.1 63.7 1.0 N A:ASP238 4.1 52.7 1.0 CA A:ILE236 4.1 67.2 1.0 N A:ILE236 4.1 64.4 1.0 CB A:ILE236 4.1 66.0 1.0 OD1 A:ASP257 4.2 79.5 1.0 CA A:ASP230 4.2 59.8 1.0 HB3 A:ASP234 4.3 82.5 1.0 N A:PHE231 4.3 52.9 1.0 HB2 A:ASP238 4.3 60.6 1.0 OD2 A:ASP230 4.4 75.5 1.0 C A:ASP237 4.4 55.6 1.0 CB A:ASP230 4.4 65.1 1.0 N A:ASN232 4.4 56.1 1.0 HA A:ASP238 4.4 63.2 1.0 CA A:ASP238 4.4 52.3 1.0 HD22 A:ASN232 4.5 76.4 1.0 N A:ASP237 4.5 54.8 1.0 N A:ASP234 4.5 66.7 1.0 HA A:ASP237 4.6 73.9 1.0 H A:GLY235 4.6 78.1 1.0 CG2 A:ILE236 4.6 67.1 1.0 HB2 A:ASP230 4.6 78.5 1.0 CB A:ASN232 4.6 58.9 1.0 HB3 A:ASP238 4.6 60.6 1.0 HB2 A:ASP234 4.7 82.5 1.0 HD11 A:LEU264 4.7 84.2 1.0 CA A:ASP237 4.7 61.2 1.0 N A:GLY258 4.8 62.5 1.0 CA A:ASP234 4.8 69.3 1.0 HA A:ASP257 4.8 67.8 1.0 C A:ASP230 4.8 56.3 1.0 H A:GLY233 4.8 71.1 1.0 O A:ASP237 4.8 56.0 1.0 N A:GLY235 4.8 64.7 1.0 HB3 A:ASN232 4.9 70.1 1.0 HA3 A:GLY258 4.9 78.0 1.0 CA A:ASN232 4.9 58.1 1.0

Calcium binding site 2 out of 20 in the Crystal Structure of An Atypical Integrin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of An Atypical Integrin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca607 b:54.9 occ:1.00 OD1 A:ASP288 2.2 58.2 1.0 O A:TYR290 2.3 50.9 1.0 OD1 A:ASP292 2.3 64.6 1.0 OD1 A:ASN286 2.3 65.2 1.0 OD2 A:ASP292 2.4 62.2 1.0 OD1 A:ASP284 2.4 58.5 1.0 OD2 A:ASP288 2.4 58.6 1.0 CG A:ASP288 2.6 57.3 1.0 CG A:ASP292 2.7 62.6 1.0 HB2 A:TYR290 3.2 68.3 1.0 H A:TYR290 3.4 69.5 1.0 CG A:ASN286 3.4 60.8 1.0 C A:TYR290 3.4 52.0 1.0 HD21 A:ASN286 3.4 78.1 1.0 HA A:ASP284 3.4 68.2 1.0 CG A:ASP284 3.6 60.5 1.0 H A:ASN286 3.6 71.3 1.0 ND2 A:ASN286 3.8 64.7 1.0 H A:ILE285 3.8 68.1 1.0 CB A:TYR290 3.8 56.6 1.0 HD22 A:LEU319 3.8 85.1 1.0 HB3 A:TYR290 3.8 68.3 1.0 H A:ASP288 3.9 71.7 1.0 H A:GLN320 3.9 74.3 1.0 CA A:TYR290 3.9 55.4 1.0 N A:TYR290 4.0 57.6 1.0 CB A:ASP292 4.1 60.5 1.0 CB A:ASP288 4.1 55.7 1.0 HB3 A:LEU319 4.2 83.4 1.0 CA A:ASP284 4.2 56.5 1.0 O A:GLN320 4.3 72.8 1.0 N A:ASP292 4.3 55.0 1.0 H A:ASP292 4.4 66.4 1.0 CB A:ASP284 4.4 58.6 1.0 N A:ILE285 4.4 56.4 1.0 HA A:LEU319 4.4 75.5 1.0 HB3 A:GLN320 4.4 82.9 1.0 HB3 A:ASP288 4.4 66.5 1.0 N A:ASN286 4.5 59.1 1.0 C A:ALA291 4.5 52.1 1.0 HB2 A:ASP284 4.5 70.8 1.0 OD2 A:ASP284 4.5 64.4 1.0 N A:ALA291 4.5 51.3 1.0 N A:GLN320 4.5 61.5 1.0 HB2 A:ASP292 4.5 73.0 1.0 HG22 A:ILE285 4.6 73.5 1.0 N A:ASP288 4.6 59.4 1.0 HD22 A:ASN286 4.6 78.1 1.0 HB2 A:ASP288 4.6 66.5 1.0 HB3 A:ASP292 4.6 73.0 1.0 CA A:ASP292 4.7 57.5 1.0 HA A:ASP292 4.7 69.5 1.0 CD2 A:LEU319 4.7 70.6 1.0 C A:ASP284 4.7 58.3 1.0 CB A:ASN286 4.7 55.2 1.0 HD23 A:LEU319 4.7 85.1 1.0 HA A:ALA291 4.8 58.5 1.0 CA A:ASP288 4.8 56.0 1.0 O A:ALA291 4.8 56.5 1.0 CA A:ALA291 4.9 49.6 1.0 HA A:TYR290 4.9 66.9 1.0 CB A:LEU319 5.0 69.1 1.0

Calcium binding site 3 out of 20 in the Crystal Structure of An Atypical Integrin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of An Atypical Integrin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca608 b:44.5 occ:1.00 O A:PHE355 2.1 83.3 1.0 OD1 A:ASP351 2.3 70.7 1.0 OD1 A:ASP349 2.3 57.0 1.0 OD1 A:ASP353 2.3 60.7 1.0 OD1 A:ASP357 2.4 61.6 1.0 OD2 A:ASP357 2.4 62.0 1.0 O A:HOH706 2.4 31.3 1.0 CG A:ASP357 2.7 61.6 1.0 HA A:ASP349 3.1 79.9 1.0 HD22 A:ASN377 3.2 87.4 1.0 CG A:ASP353 3.3 60.8 1.0 C A:PHE355 3.3 66.0 1.0 H A:ASP353 3.4 77.0 1.0 CG A:ASP351 3.4 68.2 1.0 H A:PHE355 3.4 77.8 1.0 CG A:ASP349 3.4 61.0 1.0 H A:ASP351 3.4 81.5 1.0 H A:LEU350 3.7 73.7 1.0 OD2 A:ASP351 3.8 70.4 1.0 OD2 A:ASP353 3.8 62.6 1.0 HB2 A:PHE355 3.9 72.1 1.0 CA A:ASP349 3.9 66.2 1.0 HA A:ASN356 4.0 72.6 1.0 ND2 A:ASN377 4.0 72.5 1.0 C A:ASN356 4.0 60.7 1.0 N A:PHE355 4.1 64.5 1.0 N A:LEU350 4.1 61.0 1.0 H A:GLN352 4.1 74.4 1.0 OD2 A:ASP349 4.1 61.3 1.0 H A:GLY378 4.1 69.0 1.0 CB A:ASP357 4.1 61.4 1.0 CA A:PHE355 4.2 61.3 1.0 N A:ASP351 4.2 67.6 1.0 N A:ASP353 4.2 63.8 1.0 O A:ASN356 4.2 65.9 1.0 N A:ASN356 4.2 61.7 1.0 N A:ASP357 4.2 58.2 1.0 C A:ASP349 4.3 65.7 1.0 CB A:ASP349 4.3 66.8 1.0 H A:GLY354 4.3 67.2 1.0 CA A:ASN356 4.3 60.1 1.0 HB3 A:ASN377 4.4 80.7 1.0 HD21 A:ASN377 4.4 87.4 1.0 CB A:ASP353 4.4 63.1 1.0 HB3 A:ASP353 4.4 76.1 1.0 N A:GLN352 4.5 61.6 1.0 H A:ASP357 4.5 70.3 1.0 CB A:PHE355 4.5 59.7 1.0 HB2 A:ASP357 4.6 74.1 1.0 CB A:ASP351 4.6 64.2 1.0 HA A:ASN377 4.6 75.1 1.0 HB3 A:ASP357 4.7 74.1 1.0 CA A:ASP357 4.7 58.6 1.0 HB3 A:LEU350 4.7 71.5 1.0 CA A:ASP353 4.8 65.1 1.0 O A:GLY348 4.8 60.8 1.0 HA A:ASP357 4.8 70.8 1.0 CA A:ASP351 4.8 63.5 1.0 N A:GLY354 4.8 57.8 1.0 N A:GLY378 4.8 57.1 1.0 HB2 A:ASP349 4.9 80.6 1.0 C A:ASP351 4.9 60.5 1.0 O A:GLY378 4.9 67.1 1.0 HB3 A:PHE355 4.9 72.1 1.0 HB3 A:ASP349 4.9 80.6 1.0 HA A:GLN352 5.0 75.8 1.0

Calcium binding site 4 out of 20 in the Crystal Structure of An Atypical Integrin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of An Atypical Integrin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca609 b:55.5 occ:1.00 OD1 A:ASP416 2.3 65.9 1.0 OD1 A:ASP414 2.3 70.7 1.0 O A:TYR420 2.3 72.0 1.0 OD1 A:ASN418 2.4 75.6 1.0 OD1 A:ASP422 2.4 59.6 1.0 OD2 A:ASP422 2.4 59.1 1.0 O A:HOH711 2.4 67.2 1.0 CG A:ASP422 2.7 58.0 1.0 HA A:ASP414 3.1 85.6 1.0 CG A:ASP416 3.2 68.4 1.0 CG A:ASP414 3.3 71.0 1.0 CG A:ASN418 3.4 74.1 1.0 OD2 A:ASP416 3.5 69.2 1.0 C A:TYR420 3.5 68.2 1.0 H A:ASN418 3.5 92.0 1.0 H A:ASP416 3.6 79.9 1.0 H A:TYR420 3.6 75.7 1.0 H A:ALA438 3.7 84.9 1.0 HD21 A:ASN418 3.7 84.2 1.0 HB2 A:TYR420 3.8 69.3 1.0 HB3 A:ALA438 3.9 87.6 1.0 CA A:ASP414 3.9 71.0 1.0 H A:ILE415 3.9 79.3 1.0 ND2 A:ASN418 4.0 69.8 1.0 H A:LYS417 4.0 96.8 1.0 CB A:ASP414 4.1 72.0 1.0 OD2 A:ASP414 4.1 72.2 1.0 CB A:ASP422 4.2 57.6 1.0 C A:PRO421 4.2 60.3 1.0 N A:TYR420 4.2 62.8 1.0 HA A:PRO421 4.3 71.8 1.0 CA A:TYR420 4.3 64.3 1.0 HB2 A:ASP414 4.3 86.8 1.0 N A:ILE415 4.3 65.7 1.0 N A:ASP416 4.3 66.2 1.0 C A:ASP414 4.3 70.0 1.0 N A:ASP422 4.4 61.7 1.0 N A:ASN418 4.4 76.3 1.0 O A:PRO421 4.4 63.2 1.0 HG22 A:ILE415 4.4 70.5 1.0 N A:PRO421 4.5 63.3 1.0 CB A:TYR420 4.5 59.5 1.0 CB A:ASP416 4.5 68.3 1.0 HB2 A:ASP422 4.5 69.5 1.0 CA A:PRO421 4.5 59.5 1.0 N A:ALA438 4.5 70.4 1.0 CB A:ASN418 4.5 76.3 1.0 N A:LYS417 4.5 80.4 1.0 HB3 A:ARG437 4.6 85.6 1.0 H A:ASP422 4.6 74.5 1.0 O A:ALA438 4.6 74.8 1.0 HB3 A:ASN418 4.6 92.0 1.0 HB3 A:ASP422 4.7 69.5 1.0 CA A:ASP422 4.7 60.6 1.0 CB A:ALA438 4.8 72.7 1.0 HA A:ASP422 4.8 73.2 1.0 HD22 A:ASN418 4.8 84.2 1.0 HB3 A:ASP416 4.8 82.4 1.0 HA A:ARG437 4.8 81.6 1.0 CA A:ASP416 4.8 65.8 1.0 HB3 A:TYR420 4.9 69.3 1.0 CA A:ASN418 4.9 77.9 1.0 H A:GLY419 4.9 91.3 1.0 HB3 A:ASP414 4.9 86.8 1.0 O A:THR413 5.0 65.1 1.0

Calcium binding site 5 out of 20 in the Crystal Structure of An Atypical Integrin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of An Atypical Integrin within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca2002 b:77.9 occ:1.00 O B:PRO211 2.2 93.5 1.0 OD1 B:ASP209 2.3 89.0 1.0 OD1 B:ASN207 2.3 94.7 1.0 OE2 B:GLU212 2.4 0.6 1.0 OD2 B:ASP151 2.4 72.1 1.0 O B:ASP209 2.4 90.6 1.0 HA B:GLU212 3.0 0.8 1.0 HD21 B:ASN207 3.0 0.8 1.0 CG B:ASP209 3.1 86.4 1.0 CG B:ASN207 3.1 93.3 1.0 C B:PRO211 3.3 85.5 1.0 CD B:GLU212 3.3 0.5 1.0 ND2 B:ASN207 3.4 92.8 1.0 HE2 B:HIS247 3.4 90.3 1.0 HB2 B:ASP151 3.5 92.2 1.0 C B:ASP209 3.5 88.0 1.0 CG B:ASP151 3.5 72.4 1.0 OD2 B:ASP209 3.6 85.1 1.0 CA B:GLU212 3.8 89.5 1.0 OE1 B:GLU212 3.9 0.8 1.0 HD2 B:HIS247 4.0 89.8 1.0 CB B:ASP151 4.0 76.4 1.0 N B:GLU212 4.0 85.0 1.0 H B:ASP209 4.0 0.0 1.0 CB B:ASP209 4.1 86.5 1.0 NE2 B:HIS247 4.1 74.9 1.0 CA B:ASP209 4.1 88.7 1.0 HD22 B:ASN207 4.2 0.8 1.0 O B:THR210 4.2 82.7 1.0 C B:THR210 4.2 79.8 1.0 N B:ASP209 4.2 88.8 1.0 N B:PRO211 4.3 77.2 1.0 HB3 B:ASP151 4.3 92.2 1.0 HB2 B:ASP209 4.3 0.2 1.0 CG B:GLU212 4.3 0.1 1.0 CD2 B:HIS247 4.4 74.4 1.0 HD2 B:PRO211 4.4 89.5 1.0 CA B:PRO211 4.4 77.7 1.0 CB B:ASN207 4.4 92.9 1.0 HB2 B:ASN207 4.5 1.0 1.0 HG2 B:GLU212 4.5 0.6 1.0 CB B:GLU212 4.5 0.1 1.0 N B:THR210 4.5 83.3 1.0 HB3 B:GLU212 4.5 0.6 1.0 H B:GLY213 4.5 0.4 1.0 OD1 B:ASP151 4.6 69.5 1.0 HB3 B:TYR157 4.7 0.2 1.0 CA B:THR210 4.8 80.3 1.0 H B:GLU212 4.8 0.5 1.0 HA B:THR210 4.8 96.7 1.0 H B:ILE208 4.9 0.4 1.0 HB3 B:ASN207 4.9 1.0 1.0 O B:TYR157 4.9 85.6 1.0 HB3 B:ASP209 4.9 0.2 1.0 CD B:PRO211 4.9 74.2 1.0 C B:GLU212 5.0 84.8 1.0

Calcium binding site 6 out of 20 in the Crystal Structure of An Atypical Integrin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of An Atypical Integrin within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca602 b:62.5 occ:1.00 O C:ILE236 2.2 69.3 1.0 OD1 C:ASP238 2.3 63.1 1.0 OD1 C:ASN232 2.3 78.1 1.0 OD1 C:ASP234 2.3 72.6 1.0 OD2 C:ASP238 2.4 60.6 1.0 OD1 C:ASP230 2.4 62.4 1.0 OD2 C:ASP234 2.5 70.2 1.0 CG C:ASP238 2.6 59.7 1.0 CG C:ASP234 2.7 65.8 1.0 CG C:ASN232 3.2 74.6 1.0 HD21 C:ASN232 3.4 92.2 1.0 C C:ILE236 3.4 63.4 1.0 HB C:ILE236 3.4 77.1 1.0 HA C:ASP230 3.4 71.6 1.0 H C:PHE231 3.5 74.5 1.0 CG C:ASP230 3.5 62.3 1.0 ND2 C:ASN232 3.6 76.5 1.0 H C:ASN232 3.8 86.9 1.0 OD1 C:ASP257 3.8 76.1 1.0 H C:ILE236 3.8 85.0 1.0 H C:ASP234 3.9 93.1 1.0 CB C:ASP238 3.9 57.8 1.0 HG22 C:ILE236 3.9 80.0 1.0 H C:GLY258 4.0 74.4 1.0 N C:ASP238 4.0 56.4 1.0 CA C:ILE236 4.1 65.2 1.0 H C:ASP238 4.1 65.5 1.0 CB C:ILE236 4.1 63.9 1.0 N C:ILE236 4.2 70.5 1.0 CB C:ASP234 4.2 68.4 1.0 C C:ASP237 4.2 56.7 1.0 N C:PHE231 4.2 61.7 1.0 CA C:ASP230 4.2 59.3 1.0 N C:ASN232 4.3 72.0 1.0 HB2 C:ASP238 4.3 67.2 1.0 HA C:ASP238 4.3 87.3 1.0 OD2 C:ASP230 4.3 63.8 1.0 CA C:ASP238 4.4 72.4 1.0 CB C:ASP230 4.4 60.4 1.0 CB C:ASN232 4.4 67.6 1.0 N C:ASP237 4.4 61.6 1.0 HD22 C:ASN232 4.5 92.2 1.0 HA C:ASP237 4.5 75.5 1.0 HB3 C:ASP234 4.5 80.0 1.0 HD11 C:LEU264 4.5 90.1 1.0 HA C:ASP257 4.5 79.4 1.0 CG2 C:ILE236 4.6 66.3 1.0 HB3 C:ASP238 4.6 67.2 1.0 O C:ASP237 4.6 56.6 1.0 HB3 C:ASN232 4.6 80.9 1.0 HB2 C:ASP230 4.6 70.3 1.0 CA C:ASP237 4.6 62.6 1.0 N C:ASP234 4.7 77.3 1.0 HB2 C:ASP234 4.7 80.0 1.0 C C:ASP230 4.8 63.7 1.0 N C:GLY258 4.8 61.6 1.0 H C:GLY235 4.8 89.3 1.0 CG C:ASP257 4.8 74.4 1.0 CA C:ASN232 4.8 67.6 1.0 CA C:ASP234 4.9 69.2 1.0 H C:GLY233 5.0 86.8 1.0

Calcium binding site 7 out of 20 in the Crystal Structure of An Atypical Integrin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of An Atypical Integrin within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca603 b:56.8 occ:1.00 O C:TYR290 2.3 74.6 1.0 OD1 C:ASN286 2.3 65.7 1.0 OD1 C:ASP292 2.3 74.1 1.0 OD1 C:ASP288 2.3 71.4 1.0 OD1 C:ASP284 2.4 75.4 1.0 OD2 C:ASP292 2.4 69.4 1.0 CG C:ASP292 2.7 70.5 1.0 CG C:ASP288 3.1 74.1 1.0 OD2 C:ASP288 3.3 75.1 1.0 H C:TYR290 3.3 96.0 1.0 HA C:ASP284 3.4 86.4 1.0 HB2 C:TYR290 3.4 93.2 1.0 CG C:ASN286 3.4 66.5 1.0 C C:TYR290 3.4 72.3 1.0 CG C:ASP284 3.5 73.8 1.0 HD21 C:ASN286 3.5 80.0 1.0 H C:ASN286 3.6 86.9 1.0 H C:ILE285 3.7 85.1 1.0 H C:ASP288 3.8 97.2 1.0 ND2 C:ASN286 3.9 68.5 1.0 CB C:TYR290 3.9 77.3 1.0 HB3 C:TYR290 4.0 93.2 1.0 CA C:TYR290 4.0 74.1 1.0 HD22 C:LEU319 4.0 94.5 1.0 N C:TYR290 4.0 79.7 1.0 H C:GLN320 4.1 92.3 1.0 CA C:ASP284 4.1 71.6 1.0 CB C:ASP292 4.1 68.0 1.0 N C:ILE285 4.3 70.6 1.0 OD2 C:ASP284 4.3 73.0 1.0 CB C:ASP284 4.3 73.5 1.0 HB3 C:LEU319 4.4 96.5 1.0 N C:ASN286 4.4 72.0 1.0 HG22 C:ILE285 4.4 97.3 1.0 HA C:LEU319 4.5 88.3 1.0 C C:ALA291 4.5 66.4 1.0 HB3 C:GLN320 4.5 97.2 1.0 N C:ASP292 4.5 66.5 1.0 O C:GLN320 4.5 89.5 1.0 HB2 C:ASP292 4.5 82.1 1.0 HB2 C:ASP284 4.5 88.6 1.0 CB C:ASP288 4.5 69.5 1.0 H C:GLY287 4.6 85.5 1.0 N C:ALA291 4.6 69.8 1.0 N C:ASP288 4.6 80.6 1.0 C C:ASP284 4.6 67.6 1.0 HD23 C:LEU319 4.6 94.5 1.0 O C:ALA291 4.7 66.7 1.0 HB3 C:ASP292 4.7 82.1 1.0 N C:GLN320 4.7 76.6 1.0 H C:ASP292 4.7 80.3 1.0 CB C:ASN286 4.7 66.5 1.0 HD22 C:ASN286 4.7 80.0 1.0 CD2 C:LEU319 4.8 78.4 1.0 CA C:ASP292 4.8 67.5 1.0 HA C:ASP292 4.8 81.5 1.0 HA C:ALA291 4.8 80.2 1.0 HB3 C:ASP288 4.8 81.2 1.0 CA C:ALA291 4.9 66.4 1.0 HA C:TYR290 4.9 89.3 1.0 H C:ASP289 5.0 94.6 1.0 CA C:ASP288 5.0 77.1 1.0 N C:GLY287 5.0 70.9 1.0

Calcium binding site 8 out of 20 in the Crystal Structure of An Atypical Integrin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Crystal Structure of An Atypical Integrin within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca604 b:69.4 occ:1.00 O C:PHE355 2.2 76.2 1.0 OD1 C:ASP351 2.3 69.7 1.0 OD1 C:ASP353 2.3 74.2 1.0 OD1 C:ASP357 2.3 78.5 1.0 OD1 C:ASP349 2.4 72.8 1.0 OD2 C:ASP357 2.4 78.1 1.0 CG C:ASP357 2.7 77.5 1.0 CG C:ASP353 3.1 77.8 1.0 HD22 C:ASN377 3.2 90.5 1.0 CG C:ASP351 3.3 74.2 1.0 H C:PHE355 3.4 77.7 1.0 HA C:ASP349 3.4 78.4 1.0 OD2 C:ASP353 3.4 76.0 1.0 C C:PHE355 3.4 72.5 1.0 H C:ASP351 3.5 95.5 1.0 H C:ASP353 3.6 75.5 1.0 OD2 C:ASP351 3.6 75.5 1.0 CG C:ASP349 3.6 72.5 1.0 HB2 C:PHE355 3.8 83.8 1.0 H C:GLY378 3.9 86.9 1.0 H C:LEU350 4.0 69.1 1.0 HB3 C:ASN377 4.0 92.7 1.0 ND2 C:ASN377 4.0 75.1 1.0 N C:PHE355 4.1 64.4 1.0 CB C:ASP357 4.2 73.4 1.0 CA C:ASP349 4.2 65.0 1.0 CA C:PHE355 4.2 67.0 1.0 C C:ASN356 4.2 64.0 1.0 HA C:ASN356 4.3 81.3 1.0 N C:ASP351 4.3 79.3 1.0 H C:GLN352 4.3 90.3 1.0 N C:LEU350 4.3 57.8 1.0 N C:ASP353 4.4 64.7 1.0 O C:ASN356 4.4 66.4 1.0 CB C:ASP353 4.4 85.2 1.0 OD2 C:ASP349 4.4 75.2 1.0 N C:ASP357 4.4 62.2 1.0 N C:ASN356 4.4 72.0 1.0 H C:GLY354 4.4 84.4 1.0 HA C:ASN377 4.4 90.2 1.0 CB C:PHE355 4.4 69.5 1.0 HD21 C:ASN377 4.5 90.5 1.0 C C:ASP349 4.5 63.7 1.0 CB C:ASP349 4.5 65.6 1.0 HB3 C:ASP353 4.5 0.7 1.0 CA C:ASN356 4.6 67.4 1.0 HB2 C:ASP357 4.6 88.5 1.0 CB C:ASP351 4.6 78.9 1.0 N C:GLY378 4.6 72.1 1.0 O C:GLY378 4.7 77.7 1.0 N C:GLN352 4.7 74.9 1.0 H C:ASP357 4.7 75.1 1.0 HB3 C:ASP357 4.7 88.5 1.0 CB C:ASN377 4.7 76.9 1.0 CA C:ASP357 4.8 66.7 1.0 HB3 C:LEU350 4.8 80.1 1.0 HA C:ASP357 4.8 80.5 1.0 HB3 C:PHE355 4.9 83.8 1.0 CA C:ASP351 4.9 75.9 1.0 CA C:ASP353 4.9 66.5 1.0 N C:GLY354 4.9 70.0 1.0 CG C:ASN377 4.9 76.6 1.0 O C:GLY348 4.9 72.9 1.0

Calcium binding site 9 out of 20 in the Crystal Structure of An Atypical Integrin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Crystal Structure of An Atypical Integrin within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca605 b:58.4 occ:1.00 OD1 C:ASN418 2.3 70.3 1.0 OD1 C:ASP414 2.3 73.5 1.0 OD2 C:ASP422 2.4 65.9 1.0 O C:TYR420 2.4 71.9 1.0 OD1 C:ASP416 2.4 66.2 1.0 OD1 C:ASP422 2.4 66.2 1.0 O C:HOH714 2.5 67.5 1.0 CG C:ASP422 2.6 63.8 1.0 HA C:ASP414 3.1 81.8 1.0 CG C:ASN418 3.2 71.8 1.0 H C:ASP416 3.4 87.5 1.0 CG C:ASP416 3.4 66.6 1.0 CG C:ASP414 3.5 73.5 1.0 C C:TYR420 3.6 68.4 1.0 HD21 C:ASN418 3.6 83.4 1.0 H C:ALA438 3.7 73.8 1.0 H C:TYR420 3.7 84.9 1.0 HB3 C:ALA438 3.8 69.4 1.0 ND2 C:ASN418 3.8 69.2 1.0 H C:ILE415 3.8 84.0 1.0 H C:ASN418 3.8 92.4 1.0 CA C:ASP414 3.9 67.8 1.0 OD2 C:ASP416 3.9 64.9 1.0 HB2 C:TYR420 4.0 88.8 1.0 CB C:ASP422 4.1 61.2 1.0 CB C:ASP414 4.2 72.5 1.0 N C:ILE415 4.2 69.6 1.0 HA C:PRO421 4.2 72.2 1.0 C C:PRO421 4.2 62.3 1.0 C C:ASP414 4.2 71.7 1.0 N C:ASP422 4.3 63.6 1.0 HB3 C:ASN418 4.3 88.2 1.0 N C:ASP416 4.3 72.6 1.0 HG22 C:ILE415 4.3 82.7 1.0 CB C:ASN418 4.4 73.1 1.0 HB2 C:ASP414 4.4 87.4 1.0 N C:TYR420 4.4 70.4 1.0 OD2 C:ASP414 4.4 75.9 1.0 H C:LYS417 4.4 72.6 1.0 H C:ASP422 4.4 76.8 1.0 CA C:TYR420 4.4 70.4 1.0 N C:ALA438 4.5 61.1 1.0 O C:PRO421 4.5 60.6 1.0 HB2 C:ASP422 4.5 73.9 1.0 CA C:PRO421 4.5 59.8 1.0 N C:PRO421 4.5 63.2 1.0 HB3 C:ARG437 4.6 80.3 1.0 N C:ASN418 4.6 76.6 1.0 HD22 C:ASN418 4.6 83.4 1.0 CB C:ASP416 4.6 69.5 1.0 CA C:ASP422 4.6 60.6 1.0 O C:ALA438 4.7 62.6 1.0 CB C:ALA438 4.7 59.6 1.0 HB3 C:ASP422 4.7 73.9 1.0 HA C:ASP422 4.7 73.1 1.0 CB C:TYR420 4.7 73.7 1.0 HA C:ARG437 4.7 75.8 1.0 N C:LYS417 4.8 62.3 1.0 HB3 C:ASP416 4.8 83.8 1.0 O C:THR413 4.8 67.1 1.0 CA C:ASP416 4.9 72.5 1.0 HB2 C:ALA438 4.9 69.4 1.0 H C:GLY419 5.0 86.7 1.0 CA C:ASN418 5.0 75.2 1.0

Calcium binding site 10 out of 20 in the Crystal Structure of An Atypical Integrin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Crystal Structure of An Atypical Integrin within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca504 b:61.0 occ:1.00 O D:PRO211 2.2 0.9 1.0 OD1 D:ASP209 2.3 68.8 1.0 OD2 D:ASP151 2.4 79.4 1.0 OD1 D:ASN207 2.4 96.2 1.0 OE2 D:GLU212 2.4 0.4 1.0 O D:ASP209 2.4 85.6 1.0 HA D:GLU212 3.0 0.5 1.0 CG D:ASP209 3.1 68.3 1.0 CG D:ASN207 3.2 95.9 1.0 C D:PRO211 3.2 0.1 1.0 HB2 D:ASP151 3.3 1.0 1.0 CG D:ASP151 3.4 80.5 1.0 HE2 D:HIS247 3.5 89.0 1.0 C D:ASP209 3.5 81.7 1.0 HD21 D:ASN207 3.5 0.1 1.0 OD2 D:ASP209 3.5 65.3 1.0 CD D:GLU212 3.7 0.8 1.0 ND2 D:ASN207 3.7 98.9 1.0 CB D:ASP151 3.8 84.6 1.0 CA D:GLU212 3.8 0.2 1.0 HD2 D:HIS247 3.9 88.0 1.0 N D:GLU212 3.9 0.2 1.0 HB3 D:ASP151 4.0 1.0 1.0 CB D:ASP209 4.1 72.7 1.0 NE2 D:HIS247 4.1 73.8 1.0 CA D:ASP209 4.1 79.8 1.0 C D:THR210 4.1 81.4 1.0 H D:ASP209 4.2 0.0 1.0 N D:PRO211 4.2 84.2 1.0 O D:THR210 4.2 82.7 1.0 HB2 D:ASN207 4.2 0.7 1.0 HD2 D:PRO211 4.2 99.1 1.0 N D:ASP209 4.2 83.0 1.0 CA D:PRO211 4.3 84.9 1.0 CD2 D:HIS247 4.3 73.0 1.0 HB2 D:ASP209 4.3 87.6 1.0 CB D:ASN207 4.3 96.0 1.0 HB3 D:TYR157 4.4 94.0 1.0 OE1 D:GLU212 4.4 0.4 1.0 HD22 D:ASN207 4.5 0.1 1.0 OD1 D:ASP151 4.5 76.5 1.0 N D:THR210 4.5 79.5 1.0 H D:GLY213 4.5 0.5 1.0 H D:ILE208 4.6 1.0 1.0 CG D:GLU212 4.6 0.7 1.0 CB D:GLU212 4.6 0.6 1.0 HB3 D:GLU212 4.7 0.8 1.0 HB3 D:ASN207 4.7 0.7 1.0 H D:GLU212 4.7 0.2 1.0 CD D:PRO211 4.7 82.2 1.0 O1S D:MES507 4.8 91.2 1.0 CA D:THR210 4.8 78.5 1.0 O D:TYR157 4.8 83.0 1.0 HG2 D:GLU212 4.8 0.1 1.0 HA D:THR210 4.8 94.6 1.0 C D:GLU212 4.8 0.1 1.0 HB3 D:ASP209 4.9 87.6 1.0 HB2 D:PRO211 4.9 93.8 1.0 C D:ILE208 4.9 93.3 1.0 N D:GLY213 5.0 0.2 1.0 HA D:PRO211 5.0 0.3 1.0

J.C.Wang, R.E.Iacob, J.R.Engen, T.A.Springer. Crystal Structure of Atypical Integrin Alphav BETA8 Nat Commun 2019.
ISSN: ESSN 2041-1723