Calcium in PDB 6om1: Crystal Structure of An Atypical Integrin

Protein crystallography data

The structure of Crystal Structure of An Atypical Integrin, PDB code: 6om1 was solved by J.C.Wang, T.A.Springer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.07 / 2.66
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 144.240, 55.070, 175.070, 90.37, 107.00, 90.01
R / Rfree (%) 24.8 / 28

Other elements in 6om1:

The structure of Crystal Structure of An Atypical Integrin also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Calcium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20;

Binding sites:

The binding sites of Calcium atom in the Crystal Structure of An Atypical Integrin (pdb code 6om1). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 20 binding sites of Calcium where determined in the Crystal Structure of An Atypical Integrin, PDB code: 6om1:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 20 in 6om1

Go back to Calcium Binding Sites List in 6om1
Calcium binding site 1 out of 20 in the Crystal Structure of An Atypical Integrin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of An Atypical Integrin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca606

b:61.0
occ:1.00
OD1 A:ASP234 2.3 68.0 1.0
OD1 A:ASN232 2.3 57.8 1.0
O A:ILE236 2.3 55.6 1.0
OD1 A:ASP238 2.3 55.8 1.0
OD2 A:ASP238 2.4 54.1 1.0
OD1 A:ASP230 2.4 75.6 1.0
OD2 A:ASP234 2.5 66.2 1.0
CG A:ASP238 2.6 53.7 1.0
CG A:ASP234 2.6 67.5 1.0
CG A:ASN232 3.3 58.8 1.0
HD21 A:ASN232 3.3 76.4 1.0
HA A:ASP230 3.4 72.2 1.0
C A:ILE236 3.4 56.0 1.0
HB A:ILE236 3.4 79.7 1.0
H A:PHE231 3.5 63.5 1.0
CG A:ASP230 3.5 73.2 1.0
ND2 A:ASN232 3.7 63.4 1.0
H A:ASN232 3.7 66.3 1.0
H A:ASP234 3.7 80.5 1.0
H A:ILE236 3.8 77.7 1.0
H A:GLY258 3.9 75.4 1.0
HG22 A:ILE236 3.9 81.0 1.0
CB A:ASP238 4.0 52.0 1.0
CB A:ASP234 4.1 68.4 1.0
H A:ASP238 4.1 63.7 1.0
N A:ASP238 4.1 52.7 1.0
CA A:ILE236 4.1 67.2 1.0
N A:ILE236 4.1 64.4 1.0
CB A:ILE236 4.1 66.0 1.0
OD1 A:ASP257 4.2 79.5 1.0
CA A:ASP230 4.2 59.8 1.0
HB3 A:ASP234 4.3 82.5 1.0
N A:PHE231 4.3 52.9 1.0
HB2 A:ASP238 4.3 60.6 1.0
OD2 A:ASP230 4.4 75.5 1.0
C A:ASP237 4.4 55.6 1.0
CB A:ASP230 4.4 65.1 1.0
N A:ASN232 4.4 56.1 1.0
HA A:ASP238 4.4 63.2 1.0
CA A:ASP238 4.4 52.3 1.0
HD22 A:ASN232 4.5 76.4 1.0
N A:ASP237 4.5 54.8 1.0
N A:ASP234 4.5 66.7 1.0
HA A:ASP237 4.6 73.9 1.0
H A:GLY235 4.6 78.1 1.0
CG2 A:ILE236 4.6 67.1 1.0
HB2 A:ASP230 4.6 78.5 1.0
CB A:ASN232 4.6 58.9 1.0
HB3 A:ASP238 4.6 60.6 1.0
HB2 A:ASP234 4.7 82.5 1.0
HD11 A:LEU264 4.7 84.2 1.0
CA A:ASP237 4.7 61.2 1.0
N A:GLY258 4.8 62.5 1.0
CA A:ASP234 4.8 69.3 1.0
HA A:ASP257 4.8 67.8 1.0
C A:ASP230 4.8 56.3 1.0
H A:GLY233 4.8 71.1 1.0
O A:ASP237 4.8 56.0 1.0
N A:GLY235 4.8 64.7 1.0
HB3 A:ASN232 4.9 70.1 1.0
HA3 A:GLY258 4.9 78.0 1.0
CA A:ASN232 4.9 58.1 1.0

Calcium binding site 2 out of 20 in 6om1

Go back to Calcium Binding Sites List in 6om1
Calcium binding site 2 out of 20 in the Crystal Structure of An Atypical Integrin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of An Atypical Integrin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca607

b:54.9
occ:1.00
OD1 A:ASP288 2.2 58.2 1.0
O A:TYR290 2.3 50.9 1.0
OD1 A:ASP292 2.3 64.6 1.0
OD1 A:ASN286 2.3 65.2 1.0
OD2 A:ASP292 2.4 62.2 1.0
OD1 A:ASP284 2.4 58.5 1.0
OD2 A:ASP288 2.4 58.6 1.0
CG A:ASP288 2.6 57.3 1.0
CG A:ASP292 2.7 62.6 1.0
HB2 A:TYR290 3.2 68.3 1.0
H A:TYR290 3.4 69.5 1.0
CG A:ASN286 3.4 60.8 1.0
C A:TYR290 3.4 52.0 1.0
HD21 A:ASN286 3.4 78.1 1.0
HA A:ASP284 3.4 68.2 1.0
CG A:ASP284 3.6 60.5 1.0
H A:ASN286 3.6 71.3 1.0
ND2 A:ASN286 3.8 64.7 1.0
H A:ILE285 3.8 68.1 1.0
CB A:TYR290 3.8 56.6 1.0
HD22 A:LEU319 3.8 85.1 1.0
HB3 A:TYR290 3.8 68.3 1.0
H A:ASP288 3.9 71.7 1.0
H A:GLN320 3.9 74.3 1.0
CA A:TYR290 3.9 55.4 1.0
N A:TYR290 4.0 57.6 1.0
CB A:ASP292 4.1 60.5 1.0
CB A:ASP288 4.1 55.7 1.0
HB3 A:LEU319 4.2 83.4 1.0
CA A:ASP284 4.2 56.5 1.0
O A:GLN320 4.3 72.8 1.0
N A:ASP292 4.3 55.0 1.0
H A:ASP292 4.4 66.4 1.0
CB A:ASP284 4.4 58.6 1.0
N A:ILE285 4.4 56.4 1.0
HA A:LEU319 4.4 75.5 1.0
HB3 A:GLN320 4.4 82.9 1.0
HB3 A:ASP288 4.4 66.5 1.0
N A:ASN286 4.5 59.1 1.0
C A:ALA291 4.5 52.1 1.0
HB2 A:ASP284 4.5 70.8 1.0
OD2 A:ASP284 4.5 64.4 1.0
N A:ALA291 4.5 51.3 1.0
N A:GLN320 4.5 61.5 1.0
HB2 A:ASP292 4.5 73.0 1.0
HG22 A:ILE285 4.6 73.5 1.0
N A:ASP288 4.6 59.4 1.0
HD22 A:ASN286 4.6 78.1 1.0
HB2 A:ASP288 4.6 66.5 1.0
HB3 A:ASP292 4.6 73.0 1.0
CA A:ASP292 4.7 57.5 1.0
HA A:ASP292 4.7 69.5 1.0
CD2 A:LEU319 4.7 70.6 1.0
C A:ASP284 4.7 58.3 1.0
CB A:ASN286 4.7 55.2 1.0
HD23 A:LEU319 4.7 85.1 1.0
HA A:ALA291 4.8 58.5 1.0
CA A:ASP288 4.8 56.0 1.0
O A:ALA291 4.8 56.5 1.0
CA A:ALA291 4.9 49.6 1.0
HA A:TYR290 4.9 66.9 1.0
CB A:LEU319 5.0 69.1 1.0

Calcium binding site 3 out of 20 in 6om1

Go back to Calcium Binding Sites List in 6om1
Calcium binding site 3 out of 20 in the Crystal Structure of An Atypical Integrin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of An Atypical Integrin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca608

b:44.5
occ:1.00
O A:PHE355 2.1 83.3 1.0
OD1 A:ASP351 2.3 70.7 1.0
OD1 A:ASP349 2.3 57.0 1.0
OD1 A:ASP353 2.3 60.7 1.0
OD1 A:ASP357 2.4 61.6 1.0
OD2 A:ASP357 2.4 62.0 1.0
O A:HOH706 2.4 31.3 1.0
CG A:ASP357 2.7 61.6 1.0
HA A:ASP349 3.1 79.9 1.0
HD22 A:ASN377 3.2 87.4 1.0
CG A:ASP353 3.3 60.8 1.0
C A:PHE355 3.3 66.0 1.0
H A:ASP353 3.4 77.0 1.0
CG A:ASP351 3.4 68.2 1.0
H A:PHE355 3.4 77.8 1.0
CG A:ASP349 3.4 61.0 1.0
H A:ASP351 3.4 81.5 1.0
H A:LEU350 3.7 73.7 1.0
OD2 A:ASP351 3.8 70.4 1.0
OD2 A:ASP353 3.8 62.6 1.0
HB2 A:PHE355 3.9 72.1 1.0
CA A:ASP349 3.9 66.2 1.0
HA A:ASN356 4.0 72.6 1.0
ND2 A:ASN377 4.0 72.5 1.0
C A:ASN356 4.0 60.7 1.0
N A:PHE355 4.1 64.5 1.0
N A:LEU350 4.1 61.0 1.0
H A:GLN352 4.1 74.4 1.0
OD2 A:ASP349 4.1 61.3 1.0
H A:GLY378 4.1 69.0 1.0
CB A:ASP357 4.1 61.4 1.0
CA A:PHE355 4.2 61.3 1.0
N A:ASP351 4.2 67.6 1.0
N A:ASP353 4.2 63.8 1.0
O A:ASN356 4.2 65.9 1.0
N A:ASN356 4.2 61.7 1.0
N A:ASP357 4.2 58.2 1.0
C A:ASP349 4.3 65.7 1.0
CB A:ASP349 4.3 66.8 1.0
H A:GLY354 4.3 67.2 1.0
CA A:ASN356 4.3 60.1 1.0
HB3 A:ASN377 4.4 80.7 1.0
HD21 A:ASN377 4.4 87.4 1.0
CB A:ASP353 4.4 63.1 1.0
HB3 A:ASP353 4.4 76.1 1.0
N A:GLN352 4.5 61.6 1.0
H A:ASP357 4.5 70.3 1.0
CB A:PHE355 4.5 59.7 1.0
HB2 A:ASP357 4.6 74.1 1.0
CB A:ASP351 4.6 64.2 1.0
HA A:ASN377 4.6 75.1 1.0
HB3 A:ASP357 4.7 74.1 1.0
CA A:ASP357 4.7 58.6 1.0
HB3 A:LEU350 4.7 71.5 1.0
CA A:ASP353 4.8 65.1 1.0
O A:GLY348 4.8 60.8 1.0
HA A:ASP357 4.8 70.8 1.0
CA A:ASP351 4.8 63.5 1.0
N A:GLY354 4.8 57.8 1.0
N A:GLY378 4.8 57.1 1.0
HB2 A:ASP349 4.9 80.6 1.0
C A:ASP351 4.9 60.5 1.0
O A:GLY378 4.9 67.1 1.0
HB3 A:PHE355 4.9 72.1 1.0
HB3 A:ASP349 4.9 80.6 1.0
HA A:GLN352 5.0 75.8 1.0

Calcium binding site 4 out of 20 in 6om1

Go back to Calcium Binding Sites List in 6om1
Calcium binding site 4 out of 20 in the Crystal Structure of An Atypical Integrin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of An Atypical Integrin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca609

b:55.5
occ:1.00
OD1 A:ASP416 2.3 65.9 1.0
OD1 A:ASP414 2.3 70.7 1.0
O A:TYR420 2.3 72.0 1.0
OD1 A:ASN418 2.4 75.6 1.0
OD1 A:ASP422 2.4 59.6 1.0
OD2 A:ASP422 2.4 59.1 1.0
O A:HOH711 2.4 67.2 1.0
CG A:ASP422 2.7 58.0 1.0
HA A:ASP414 3.1 85.6 1.0
CG A:ASP416 3.2 68.4 1.0
CG A:ASP414 3.3 71.0 1.0
CG A:ASN418 3.4 74.1 1.0
OD2 A:ASP416 3.5 69.2 1.0
C A:TYR420 3.5 68.2 1.0
H A:ASN418 3.5 92.0 1.0
H A:ASP416 3.6 79.9 1.0
H A:TYR420 3.6 75.7 1.0
H A:ALA438 3.7 84.9 1.0
HD21 A:ASN418 3.7 84.2 1.0
HB2 A:TYR420 3.8 69.3 1.0
HB3 A:ALA438 3.9 87.6 1.0
CA A:ASP414 3.9 71.0 1.0
H A:ILE415 3.9 79.3 1.0
ND2 A:ASN418 4.0 69.8 1.0
H A:LYS417 4.0 96.8 1.0
CB A:ASP414 4.1 72.0 1.0
OD2 A:ASP414 4.1 72.2 1.0
CB A:ASP422 4.2 57.6 1.0
C A:PRO421 4.2 60.3 1.0
N A:TYR420 4.2 62.8 1.0
HA A:PRO421 4.3 71.8 1.0
CA A:TYR420 4.3 64.3 1.0
HB2 A:ASP414 4.3 86.8 1.0
N A:ILE415 4.3 65.7 1.0
N A:ASP416 4.3 66.2 1.0
C A:ASP414 4.3 70.0 1.0
N A:ASP422 4.4 61.7 1.0
N A:ASN418 4.4 76.3 1.0
O A:PRO421 4.4 63.2 1.0
HG22 A:ILE415 4.4 70.5 1.0
N A:PRO421 4.5 63.3 1.0
CB A:TYR420 4.5 59.5 1.0
CB A:ASP416 4.5 68.3 1.0
HB2 A:ASP422 4.5 69.5 1.0
CA A:PRO421 4.5 59.5 1.0
N A:ALA438 4.5 70.4 1.0
CB A:ASN418 4.5 76.3 1.0
N A:LYS417 4.5 80.4 1.0
HB3 A:ARG437 4.6 85.6 1.0
H A:ASP422 4.6 74.5 1.0
O A:ALA438 4.6 74.8 1.0
HB3 A:ASN418 4.6 92.0 1.0
HB3 A:ASP422 4.7 69.5 1.0
CA A:ASP422 4.7 60.6 1.0
CB A:ALA438 4.8 72.7 1.0
HA A:ASP422 4.8 73.2 1.0
HD22 A:ASN418 4.8 84.2 1.0
HB3 A:ASP416 4.8 82.4 1.0
HA A:ARG437 4.8 81.6 1.0
CA A:ASP416 4.8 65.8 1.0
HB3 A:TYR420 4.9 69.3 1.0
CA A:ASN418 4.9 77.9 1.0
H A:GLY419 4.9 91.3 1.0
HB3 A:ASP414 4.9 86.8 1.0
O A:THR413 5.0 65.1 1.0

Calcium binding site 5 out of 20 in 6om1

Go back to Calcium Binding Sites List in 6om1
Calcium binding site 5 out of 20 in the Crystal Structure of An Atypical Integrin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of An Atypical Integrin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca2002

b:77.9
occ:1.00
O B:PRO211 2.2 93.5 1.0
OD1 B:ASP209 2.3 89.0 1.0
OD1 B:ASN207 2.3 94.7 1.0
OE2 B:GLU212 2.4 0.6 1.0
OD2 B:ASP151 2.4 72.1 1.0
O B:ASP209 2.4 90.6 1.0
HA B:GLU212 3.0 0.8 1.0
HD21 B:ASN207 3.0 0.8 1.0
CG B:ASP209 3.1 86.4 1.0
CG B:ASN207 3.1 93.3 1.0
C B:PRO211 3.3 85.5 1.0
CD B:GLU212 3.3 0.5 1.0
ND2 B:ASN207 3.4 92.8 1.0
HE2 B:HIS247 3.4 90.3 1.0
HB2 B:ASP151 3.5 92.2 1.0
C B:ASP209 3.5 88.0 1.0
CG B:ASP151 3.5 72.4 1.0
OD2 B:ASP209 3.6 85.1 1.0
CA B:GLU212 3.8 89.5 1.0
OE1 B:GLU212 3.9 0.8 1.0
HD2 B:HIS247 4.0 89.8 1.0
CB B:ASP151 4.0 76.4 1.0
N B:GLU212 4.0 85.0 1.0
H B:ASP209 4.0 0.0 1.0
CB B:ASP209 4.1 86.5 1.0
NE2 B:HIS247 4.1 74.9 1.0
CA B:ASP209 4.1 88.7 1.0
HD22 B:ASN207 4.2 0.8 1.0
O B:THR210 4.2 82.7 1.0
C B:THR210 4.2 79.8 1.0
N B:ASP209 4.2 88.8 1.0
N B:PRO211 4.3 77.2 1.0
HB3 B:ASP151 4.3 92.2 1.0
HB2 B:ASP209 4.3 0.2 1.0
CG B:GLU212 4.3 0.1 1.0
CD2 B:HIS247 4.4 74.4 1.0
HD2 B:PRO211 4.4 89.5 1.0
CA B:PRO211 4.4 77.7 1.0
CB B:ASN207 4.4 92.9 1.0
HB2 B:ASN207 4.5 1.0 1.0
HG2 B:GLU212 4.5 0.6 1.0
CB B:GLU212 4.5 0.1 1.0
N B:THR210 4.5 83.3 1.0
HB3 B:GLU212 4.5 0.6 1.0
H B:GLY213 4.5 0.4 1.0
OD1 B:ASP151 4.6 69.5 1.0
HB3 B:TYR157 4.7 0.2 1.0
CA B:THR210 4.8 80.3 1.0
H B:GLU212 4.8 0.5 1.0
HA B:THR210 4.8 96.7 1.0
H B:ILE208 4.9 0.4 1.0
HB3 B:ASN207 4.9 1.0 1.0
O B:TYR157 4.9 85.6 1.0
HB3 B:ASP209 4.9 0.2 1.0
CD B:PRO211 4.9 74.2 1.0
C B:GLU212 5.0 84.8 1.0

Calcium binding site 6 out of 20 in 6om1

Go back to Calcium Binding Sites List in 6om1
Calcium binding site 6 out of 20 in the Crystal Structure of An Atypical Integrin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of An Atypical Integrin within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca602

b:62.5
occ:1.00
O C:ILE236 2.2 69.3 1.0
OD1 C:ASP238 2.3 63.1 1.0
OD1 C:ASN232 2.3 78.1 1.0
OD1 C:ASP234 2.3 72.6 1.0
OD2 C:ASP238 2.4 60.6 1.0
OD1 C:ASP230 2.4 62.4 1.0
OD2 C:ASP234 2.5 70.2 1.0
CG C:ASP238 2.6 59.7 1.0
CG C:ASP234 2.7 65.8 1.0
CG C:ASN232 3.2 74.6 1.0
HD21 C:ASN232 3.4 92.2 1.0
C C:ILE236 3.4 63.4 1.0
HB C:ILE236 3.4 77.1 1.0
HA C:ASP230 3.4 71.6 1.0
H C:PHE231 3.5 74.5 1.0
CG C:ASP230 3.5 62.3 1.0
ND2 C:ASN232 3.6 76.5 1.0
H C:ASN232 3.8 86.9 1.0
OD1 C:ASP257 3.8 76.1 1.0
H C:ILE236 3.8 85.0 1.0
H C:ASP234 3.9 93.1 1.0
CB C:ASP238 3.9 57.8 1.0
HG22 C:ILE236 3.9 80.0 1.0
H C:GLY258 4.0 74.4 1.0
N C:ASP238 4.0 56.4 1.0
CA C:ILE236 4.1 65.2 1.0
H C:ASP238 4.1 65.5 1.0
CB C:ILE236 4.1 63.9 1.0
N C:ILE236 4.2 70.5 1.0
CB C:ASP234 4.2 68.4 1.0
C C:ASP237 4.2 56.7 1.0
N C:PHE231 4.2 61.7 1.0
CA C:ASP230 4.2 59.3 1.0
N C:ASN232 4.3 72.0 1.0
HB2 C:ASP238 4.3 67.2 1.0
HA C:ASP238 4.3 87.3 1.0
OD2 C:ASP230 4.3 63.8 1.0
CA C:ASP238 4.4 72.4 1.0
CB C:ASP230 4.4 60.4 1.0
CB C:ASN232 4.4 67.6 1.0
N C:ASP237 4.4 61.6 1.0
HD22 C:ASN232 4.5 92.2 1.0
HA C:ASP237 4.5 75.5 1.0
HB3 C:ASP234 4.5 80.0 1.0
HD11 C:LEU264 4.5 90.1 1.0
HA C:ASP257 4.5 79.4 1.0
CG2 C:ILE236 4.6 66.3 1.0
HB3 C:ASP238 4.6 67.2 1.0
O C:ASP237 4.6 56.6 1.0
HB3 C:ASN232 4.6 80.9 1.0
HB2 C:ASP230 4.6 70.3 1.0
CA C:ASP237 4.6 62.6 1.0
N C:ASP234 4.7 77.3 1.0
HB2 C:ASP234 4.7 80.0 1.0
C C:ASP230 4.8 63.7 1.0
N C:GLY258 4.8 61.6 1.0
H C:GLY235 4.8 89.3 1.0
CG C:ASP257 4.8 74.4 1.0
CA C:ASN232 4.8 67.6 1.0
CA C:ASP234 4.9 69.2 1.0
H C:GLY233 5.0 86.8 1.0

Calcium binding site 7 out of 20 in 6om1

Go back to Calcium Binding Sites List in 6om1
Calcium binding site 7 out of 20 in the Crystal Structure of An Atypical Integrin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of An Atypical Integrin within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca603

b:56.8
occ:1.00
O C:TYR290 2.3 74.6 1.0
OD1 C:ASN286 2.3 65.7 1.0
OD1 C:ASP292 2.3 74.1 1.0
OD1 C:ASP288 2.3 71.4 1.0
OD1 C:ASP284 2.4 75.4 1.0
OD2 C:ASP292 2.4 69.4 1.0
CG C:ASP292 2.7 70.5 1.0
CG C:ASP288 3.1 74.1 1.0
OD2 C:ASP288 3.3 75.1 1.0
H C:TYR290 3.3 96.0 1.0
HA C:ASP284 3.4 86.4 1.0
HB2 C:TYR290 3.4 93.2 1.0
CG C:ASN286 3.4 66.5 1.0
C C:TYR290 3.4 72.3 1.0
CG C:ASP284 3.5 73.8 1.0
HD21 C:ASN286 3.5 80.0 1.0
H C:ASN286 3.6 86.9 1.0
H C:ILE285 3.7 85.1 1.0
H C:ASP288 3.8 97.2 1.0
ND2 C:ASN286 3.9 68.5 1.0
CB C:TYR290 3.9 77.3 1.0
HB3 C:TYR290 4.0 93.2 1.0
CA C:TYR290 4.0 74.1 1.0
HD22 C:LEU319 4.0 94.5 1.0
N C:TYR290 4.0 79.7 1.0
H C:GLN320 4.1 92.3 1.0
CA C:ASP284 4.1 71.6 1.0
CB C:ASP292 4.1 68.0 1.0
N C:ILE285 4.3 70.6 1.0
OD2 C:ASP284 4.3 73.0 1.0
CB C:ASP284 4.3 73.5 1.0
HB3 C:LEU319 4.4 96.5 1.0
N C:ASN286 4.4 72.0 1.0
HG22 C:ILE285 4.4 97.3 1.0
HA C:LEU319 4.5 88.3 1.0
C C:ALA291 4.5 66.4 1.0
HB3 C:GLN320 4.5 97.2 1.0
N C:ASP292 4.5 66.5 1.0
O C:GLN320 4.5 89.5 1.0
HB2 C:ASP292 4.5 82.1 1.0
HB2 C:ASP284 4.5 88.6 1.0
CB C:ASP288 4.5 69.5 1.0
H C:GLY287 4.6 85.5 1.0
N C:ALA291 4.6 69.8 1.0
N C:ASP288 4.6 80.6 1.0
C C:ASP284 4.6 67.6 1.0
HD23 C:LEU319 4.6 94.5 1.0
O C:ALA291 4.7 66.7 1.0
HB3 C:ASP292 4.7 82.1 1.0
N C:GLN320 4.7 76.6 1.0
H C:ASP292 4.7 80.3 1.0
CB C:ASN286 4.7 66.5 1.0
HD22 C:ASN286 4.7 80.0 1.0
CD2 C:LEU319 4.8 78.4 1.0
CA C:ASP292 4.8 67.5 1.0
HA C:ASP292 4.8 81.5 1.0
HA C:ALA291 4.8 80.2 1.0
HB3 C:ASP288 4.8 81.2 1.0
CA C:ALA291 4.9 66.4 1.0
HA C:TYR290 4.9 89.3 1.0
H C:ASP289 5.0 94.6 1.0
CA C:ASP288 5.0 77.1 1.0
N C:GLY287 5.0 70.9 1.0

Calcium binding site 8 out of 20 in 6om1

Go back to Calcium Binding Sites List in 6om1
Calcium binding site 8 out of 20 in the Crystal Structure of An Atypical Integrin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Crystal Structure of An Atypical Integrin within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca604

b:69.4
occ:1.00
O C:PHE355 2.2 76.2 1.0
OD1 C:ASP351 2.3 69.7 1.0
OD1 C:ASP353 2.3 74.2 1.0
OD1 C:ASP357 2.3 78.5 1.0
OD1 C:ASP349 2.4 72.8 1.0
OD2 C:ASP357 2.4 78.1 1.0
CG C:ASP357 2.7 77.5 1.0
CG C:ASP353 3.1 77.8 1.0
HD22 C:ASN377 3.2 90.5 1.0
CG C:ASP351 3.3 74.2 1.0
H C:PHE355 3.4 77.7 1.0
HA C:ASP349 3.4 78.4 1.0
OD2 C:ASP353 3.4 76.0 1.0
C C:PHE355 3.4 72.5 1.0
H C:ASP351 3.5 95.5 1.0
H C:ASP353 3.6 75.5 1.0
OD2 C:ASP351 3.6 75.5 1.0
CG C:ASP349 3.6 72.5 1.0
HB2 C:PHE355 3.8 83.8 1.0
H C:GLY378 3.9 86.9 1.0
H C:LEU350 4.0 69.1 1.0
HB3 C:ASN377 4.0 92.7 1.0
ND2 C:ASN377 4.0 75.1 1.0
N C:PHE355 4.1 64.4 1.0
CB C:ASP357 4.2 73.4 1.0
CA C:ASP349 4.2 65.0 1.0
CA C:PHE355 4.2 67.0 1.0
C C:ASN356 4.2 64.0 1.0
HA C:ASN356 4.3 81.3 1.0
N C:ASP351 4.3 79.3 1.0
H C:GLN352 4.3 90.3 1.0
N C:LEU350 4.3 57.8 1.0
N C:ASP353 4.4 64.7 1.0
O C:ASN356 4.4 66.4 1.0
CB C:ASP353 4.4 85.2 1.0
OD2 C:ASP349 4.4 75.2 1.0
N C:ASP357 4.4 62.2 1.0
N C:ASN356 4.4 72.0 1.0
H C:GLY354 4.4 84.4 1.0
HA C:ASN377 4.4 90.2 1.0
CB C:PHE355 4.4 69.5 1.0
HD21 C:ASN377 4.5 90.5 1.0
C C:ASP349 4.5 63.7 1.0
CB C:ASP349 4.5 65.6 1.0
HB3 C:ASP353 4.5 0.7 1.0
CA C:ASN356 4.6 67.4 1.0
HB2 C:ASP357 4.6 88.5 1.0
CB C:ASP351 4.6 78.9 1.0
N C:GLY378 4.6 72.1 1.0
O C:GLY378 4.7 77.7 1.0
N C:GLN352 4.7 74.9 1.0
H C:ASP357 4.7 75.1 1.0
HB3 C:ASP357 4.7 88.5 1.0
CB C:ASN377 4.7 76.9 1.0
CA C:ASP357 4.8 66.7 1.0
HB3 C:LEU350 4.8 80.1 1.0
HA C:ASP357 4.8 80.5 1.0
HB3 C:PHE355 4.9 83.8 1.0
CA C:ASP351 4.9 75.9 1.0
CA C:ASP353 4.9 66.5 1.0
N C:GLY354 4.9 70.0 1.0
CG C:ASN377 4.9 76.6 1.0
O C:GLY348 4.9 72.9 1.0

Calcium binding site 9 out of 20 in 6om1

Go back to Calcium Binding Sites List in 6om1
Calcium binding site 9 out of 20 in the Crystal Structure of An Atypical Integrin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Crystal Structure of An Atypical Integrin within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca605

b:58.4
occ:1.00
OD1 C:ASN418 2.3 70.3 1.0
OD1 C:ASP414 2.3 73.5 1.0
OD2 C:ASP422 2.4 65.9 1.0
O C:TYR420 2.4 71.9 1.0
OD1 C:ASP416 2.4 66.2 1.0
OD1 C:ASP422 2.4 66.2 1.0
O C:HOH714 2.5 67.5 1.0
CG C:ASP422 2.6 63.8 1.0
HA C:ASP414 3.1 81.8 1.0
CG C:ASN418 3.2 71.8 1.0
H C:ASP416 3.4 87.5 1.0
CG C:ASP416 3.4 66.6 1.0
CG C:ASP414 3.5 73.5 1.0
C C:TYR420 3.6 68.4 1.0
HD21 C:ASN418 3.6 83.4 1.0
H C:ALA438 3.7 73.8 1.0
H C:TYR420 3.7 84.9 1.0
HB3 C:ALA438 3.8 69.4 1.0
ND2 C:ASN418 3.8 69.2 1.0
H C:ILE415 3.8 84.0 1.0
H C:ASN418 3.8 92.4 1.0
CA C:ASP414 3.9 67.8 1.0
OD2 C:ASP416 3.9 64.9 1.0
HB2 C:TYR420 4.0 88.8 1.0
CB C:ASP422 4.1 61.2 1.0
CB C:ASP414 4.2 72.5 1.0
N C:ILE415 4.2 69.6 1.0
HA C:PRO421 4.2 72.2 1.0
C C:PRO421 4.2 62.3 1.0
C C:ASP414 4.2 71.7 1.0
N C:ASP422 4.3 63.6 1.0
HB3 C:ASN418 4.3 88.2 1.0
N C:ASP416 4.3 72.6 1.0
HG22 C:ILE415 4.3 82.7 1.0
CB C:ASN418 4.4 73.1 1.0
HB2 C:ASP414 4.4 87.4 1.0
N C:TYR420 4.4 70.4 1.0
OD2 C:ASP414 4.4 75.9 1.0
H C:LYS417 4.4 72.6 1.0
H C:ASP422 4.4 76.8 1.0
CA C:TYR420 4.4 70.4 1.0
N C:ALA438 4.5 61.1 1.0
O C:PRO421 4.5 60.6 1.0
HB2 C:ASP422 4.5 73.9 1.0
CA C:PRO421 4.5 59.8 1.0
N C:PRO421 4.5 63.2 1.0
HB3 C:ARG437 4.6 80.3 1.0
N C:ASN418 4.6 76.6 1.0
HD22 C:ASN418 4.6 83.4 1.0
CB C:ASP416 4.6 69.5 1.0
CA C:ASP422 4.6 60.6 1.0
O C:ALA438 4.7 62.6 1.0
CB C:ALA438 4.7 59.6 1.0
HB3 C:ASP422 4.7 73.9 1.0
HA C:ASP422 4.7 73.1 1.0
CB C:TYR420 4.7 73.7 1.0
HA C:ARG437 4.7 75.8 1.0
N C:LYS417 4.8 62.3 1.0
HB3 C:ASP416 4.8 83.8 1.0
O C:THR413 4.8 67.1 1.0
CA C:ASP416 4.9 72.5 1.0
HB2 C:ALA438 4.9 69.4 1.0
H C:GLY419 5.0 86.7 1.0
CA C:ASN418 5.0 75.2 1.0

Calcium binding site 10 out of 20 in 6om1

Go back to Calcium Binding Sites List in 6om1
Calcium binding site 10 out of 20 in the Crystal Structure of An Atypical Integrin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Crystal Structure of An Atypical Integrin within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca504

b:61.0
occ:1.00
O D:PRO211 2.2 0.9 1.0
OD1 D:ASP209 2.3 68.8 1.0
OD2 D:ASP151 2.4 79.4 1.0
OD1 D:ASN207 2.4 96.2 1.0
OE2 D:GLU212 2.4 0.4 1.0
O D:ASP209 2.4 85.6 1.0
HA D:GLU212 3.0 0.5 1.0
CG D:ASP209 3.1 68.3 1.0
CG D:ASN207 3.2 95.9 1.0
C D:PRO211 3.2 0.1 1.0
HB2 D:ASP151 3.3 1.0 1.0
CG D:ASP151 3.4 80.5 1.0
HE2 D:HIS247 3.5 89.0 1.0
C D:ASP209 3.5 81.7 1.0
HD21 D:ASN207 3.5 0.1 1.0
OD2 D:ASP209 3.5 65.3 1.0
CD D:GLU212 3.7 0.8 1.0
ND2 D:ASN207 3.7 98.9 1.0
CB D:ASP151 3.8 84.6 1.0
CA D:GLU212 3.8 0.2 1.0
HD2 D:HIS247 3.9 88.0 1.0
N D:GLU212 3.9 0.2 1.0
HB3 D:ASP151 4.0 1.0 1.0
CB D:ASP209 4.1 72.7 1.0
NE2 D:HIS247 4.1 73.8 1.0
CA D:ASP209 4.1 79.8 1.0
C D:THR210 4.1 81.4 1.0
H D:ASP209 4.2 0.0 1.0
N D:PRO211 4.2 84.2 1.0
O D:THR210 4.2 82.7 1.0
HB2 D:ASN207 4.2 0.7 1.0
HD2 D:PRO211 4.2 99.1 1.0
N D:ASP209 4.2 83.0 1.0
CA D:PRO211 4.3 84.9 1.0
CD2 D:HIS247 4.3 73.0 1.0
HB2 D:ASP209 4.3 87.6 1.0
CB D:ASN207 4.3 96.0 1.0
HB3 D:TYR157 4.4 94.0 1.0
OE1 D:GLU212 4.4 0.4 1.0
HD22 D:ASN207 4.5 0.1 1.0
OD1 D:ASP151 4.5 76.5 1.0
N D:THR210 4.5 79.5 1.0
H D:GLY213 4.5 0.5 1.0
H D:ILE208 4.6 1.0 1.0
CG D:GLU212 4.6 0.7 1.0
CB D:GLU212 4.6 0.6 1.0
HB3 D:GLU212 4.7 0.8 1.0
HB3 D:ASN207 4.7 0.7 1.0
H D:GLU212 4.7 0.2 1.0
CD D:PRO211 4.7 82.2 1.0
O1S D:MES507 4.8 91.2 1.0
CA D:THR210 4.8 78.5 1.0
O D:TYR157 4.8 83.0 1.0
HG2 D:GLU212 4.8 0.1 1.0
HA D:THR210 4.8 94.6 1.0
C D:GLU212 4.8 0.1 1.0
HB3 D:ASP209 4.9 87.6 1.0
HB2 D:PRO211 4.9 93.8 1.0
C D:ILE208 4.9 93.3 1.0
N D:GLY213 5.0 0.2 1.0
HA D:PRO211 5.0 0.3 1.0

Reference:

J.C.Wang, R.E.Iacob, J.R.Engen, T.A.Springer. Crystal Structure of Atypical Integrin Alphav BETA8 Nat Commun 2019.
ISSN: ESSN 2041-1723
Page generated: Sat Dec 12 07:24:22 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy