Calcium in PDB 6om2: Crystal Structure of Atypical Integrin Alphav BETA8 with Protgf-BETA1 Ligand Peptide
Protein crystallography data
The structure of Crystal Structure of Atypical Integrin Alphav BETA8 with Protgf-BETA1 Ligand Peptide, PDB code: 6om2
was solved by
J.C.Wang,
T.A.Springer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
47.43 /
2.77
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
161.190,
53.850,
176.620,
90.00,
111.47,
90.00
|
|
R / Rfree (%)
|
25.1 /
28.2
|
Other elements in 6om2:
The structure of Crystal Structure of Atypical Integrin Alphav BETA8 with Protgf-BETA1 Ligand Peptide also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Crystal Structure of Atypical Integrin Alphav BETA8 with Protgf-BETA1 Ligand Peptide
(pdb code 6om2). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 10 binding sites of Calcium where determined in the
Crystal Structure of Atypical Integrin Alphav BETA8 with Protgf-BETA1 Ligand Peptide, PDB code: 6om2:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 10 in 6om2
Go back to
Calcium Binding Sites List in 6om2
Calcium binding site 1 out
of 10 in the Crystal Structure of Atypical Integrin Alphav BETA8 with Protgf-BETA1 Ligand Peptide
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of Atypical Integrin Alphav BETA8 with Protgf-BETA1 Ligand Peptide within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca2001
b:69.9
occ:1.00
|
OD1
|
A:ASP234
|
2.3
|
77.9
|
1.0
|
|
OD1
|
A:ASN232
|
2.3
|
71.8
|
1.0
|
|
OD1
|
A:ASP238
|
2.4
|
74.3
|
1.0
|
|
OD2
|
A:ASP238
|
2.4
|
74.2
|
1.0
|
|
O
|
A:ILE236
|
2.4
|
69.4
|
1.0
|
|
OD1
|
A:ASP230
|
2.4
|
84.6
|
1.0
|
|
OD2
|
A:ASP234
|
2.5
|
77.9
|
1.0
|
|
CG
|
A:ASP238
|
2.7
|
72.5
|
1.0
|
|
CG
|
A:ASP234
|
2.7
|
80.0
|
1.0
|
|
HD21
|
A:ASN232
|
2.8
|
86.0
|
1.0
|
|
CG
|
A:ASN232
|
3.1
|
71.7
|
1.0
|
|
ND2
|
A:ASN232
|
3.2
|
71.7
|
1.0
|
|
H
|
A:PHE231
|
3.4
|
83.3
|
1.0
|
|
HA
|
A:ASP230
|
3.5
|
92.1
|
1.0
|
|
HB
|
A:ILE236
|
3.5
|
89.9
|
1.0
|
|
H
|
A:ASN232
|
3.5
|
82.2
|
1.0
|
|
CG
|
A:ASP230
|
3.5
|
84.9
|
1.0
|
|
C
|
A:ILE236
|
3.6
|
70.5
|
1.0
|
|
H
|
A:ASP234
|
3.7
|
0.5
|
1.0
|
|
OD1
|
A:ASP257
|
3.9
|
80.2
|
1.0
|
|
H
|
A:ILE236
|
3.9
|
89.1
|
1.0
|
|
HD22
|
A:ASN232
|
4.0
|
86.0
|
1.0
|
|
H
|
A:GLY258
|
4.1
|
0.4
|
1.0
|
|
CB
|
A:ASP238
|
4.1
|
68.5
|
1.0
|
|
CB
|
A:ASP234
|
4.1
|
85.2
|
1.0
|
|
N
|
A:PHE231
|
4.2
|
69.5
|
1.0
|
|
N
|
A:ASN232
|
4.2
|
68.5
|
1.0
|
|
N
|
A:ILE236
|
4.2
|
74.2
|
1.0
|
|
CA
|
A:ILE236
|
4.3
|
73.4
|
1.0
|
|
OD2
|
A:ASP230
|
4.3
|
89.0
|
1.0
|
|
CA
|
A:ASP230
|
4.3
|
76.7
|
1.0
|
|
HB3
|
A:ASP234
|
4.3
|
0.2
|
1.0
|
|
N
|
A:ASP238
|
4.3
|
67.9
|
1.0
|
|
CB
|
A:ILE236
|
4.3
|
74.9
|
1.0
|
|
H
|
A:ASP238
|
4.4
|
81.5
|
1.0
|
|
HB2
|
A:ASP238
|
4.4
|
82.2
|
1.0
|
|
CB
|
A:ASN232
|
4.4
|
71.8
|
1.0
|
|
CB
|
A:ASP230
|
4.4
|
80.5
|
1.0
|
|
N
|
A:ASP234
|
4.5
|
84.6
|
1.0
|
|
H
|
A:GLY235
|
4.5
|
97.4
|
1.0
|
|
C
|
A:ASP237
|
4.5
|
81.7
|
1.0
|
|
HG22
|
A:ILE236
|
4.6
|
89.1
|
1.0
|
|
CA
|
A:ASP238
|
4.7
|
67.0
|
1.0
|
|
N
|
A:ASP237
|
4.7
|
87.5
|
1.0
|
|
HA
|
A:ASP238
|
4.7
|
80.3
|
1.0
|
|
HA
|
A:ASP237
|
4.7
|
99.6
|
1.0
|
|
H
|
A:GLY233
|
4.7
|
93.2
|
1.0
|
|
HB3
|
A:ASP238
|
4.7
|
82.2
|
1.0
|
|
HB2
|
A:ASP234
|
4.7
|
0.2
|
1.0
|
|
HB2
|
A:ASP230
|
4.7
|
96.6
|
1.0
|
|
CA
|
A:ASN232
|
4.7
|
70.9
|
1.0
|
|
CA
|
A:ASP234
|
4.8
|
87.3
|
1.0
|
|
HB3
|
A:ASN232
|
4.8
|
86.2
|
1.0
|
|
C
|
A:ASP230
|
4.8
|
77.3
|
1.0
|
|
N
|
A:GLY235
|
4.8
|
81.1
|
1.0
|
|
HA
|
A:ASP257
|
4.8
|
87.5
|
1.0
|
|
O
|
A:ASP237
|
4.9
|
82.5
|
1.0
|
|
CA
|
A:ASP237
|
4.9
|
83.0
|
1.0
|
|
N
|
A:GLY233
|
4.9
|
77.6
|
1.0
|
|
HD11
|
A:LEU264
|
4.9
|
95.9
|
1.0
|
|
N
|
A:GLY258
|
4.9
|
87.0
|
1.0
|
|
C
|
A:ASN232
|
5.0
|
72.7
|
1.0
|
|
C
|
A:PHE231
|
5.0
|
73.5
|
1.0
|
|
Calcium binding site 2 out
of 10 in 6om2
Go back to
Calcium Binding Sites List in 6om2
Calcium binding site 2 out
of 10 in the Crystal Structure of Atypical Integrin Alphav BETA8 with Protgf-BETA1 Ligand Peptide
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of Atypical Integrin Alphav BETA8 with Protgf-BETA1 Ligand Peptide within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca2002
b:70.2
occ:1.00
|
OD1
|
A:ASP288
|
2.3
|
80.3
|
1.0
|
|
OD2
|
A:ASP292
|
2.3
|
61.3
|
1.0
|
|
O
|
A:TYR290
|
2.3
|
62.8
|
1.0
|
|
OD1
|
A:ASP292
|
2.4
|
61.7
|
1.0
|
|
OD1
|
A:ASN286
|
2.4
|
72.5
|
1.0
|
|
O
|
A:HOH2101
|
2.4
|
77.2
|
1.0
|
|
OD1
|
A:ASP284
|
2.4
|
72.5
|
1.0
|
|
OD2
|
A:ASP288
|
2.4
|
79.3
|
1.0
|
|
CG
|
A:ASP292
|
2.6
|
61.0
|
1.0
|
|
CG
|
A:ASP288
|
2.6
|
80.7
|
1.0
|
|
HA
|
A:ASP284
|
3.1
|
81.1
|
1.0
|
|
H
|
A:ILE285
|
3.3
|
83.0
|
1.0
|
|
H
|
A:TYR290
|
3.4
|
84.7
|
1.0
|
|
C
|
A:TYR290
|
3.5
|
64.9
|
1.0
|
|
CG
|
A:ASN286
|
3.5
|
72.3
|
1.0
|
|
HB2
|
A:TYR290
|
3.5
|
87.8
|
1.0
|
|
CG
|
A:ASP284
|
3.5
|
73.2
|
1.0
|
|
H
|
A:ASN286
|
3.6
|
83.6
|
1.0
|
|
HD21
|
A:ASN286
|
3.7
|
88.4
|
1.0
|
|
H
|
A:ASP288
|
3.9
|
94.1
|
1.0
|
|
CA
|
A:ASP284
|
4.0
|
67.6
|
1.0
|
|
N
|
A:ILE285
|
4.0
|
69.2
|
1.0
|
|
ND2
|
A:ASN286
|
4.0
|
73.7
|
1.0
|
|
N
|
A:TYR290
|
4.1
|
70.6
|
1.0
|
|
CB
|
A:ASP288
|
4.1
|
82.7
|
1.0
|
|
CB
|
A:ASP292
|
4.1
|
60.2
|
1.0
|
|
CA
|
A:TYR290
|
4.1
|
70.4
|
1.0
|
|
CB
|
A:ASP284
|
4.2
|
71.1
|
1.0
|
|
CB
|
A:TYR290
|
4.3
|
73.1
|
1.0
|
|
HG22
|
A:ILE285
|
4.3
|
82.9
|
1.0
|
|
N
|
A:ASN286
|
4.3
|
69.7
|
1.0
|
|
HB3
|
A:ASP288
|
4.3
|
99.2
|
1.0
|
|
HG
|
A:LEU319
|
4.4
|
87.5
|
1.0
|
|
H
|
A:GLN320
|
4.4
|
82.7
|
1.0
|
|
C
|
A:ASP284
|
4.4
|
65.6
|
1.0
|
|
C
|
A:ALA291
|
4.4
|
61.9
|
1.0
|
|
HB2
|
A:ASP284
|
4.4
|
85.3
|
1.0
|
|
N
|
A:ASP292
|
4.4
|
59.9
|
1.0
|
|
OD2
|
A:ASP284
|
4.5
|
75.8
|
1.0
|
|
HB2
|
A:ASP292
|
4.5
|
72.2
|
1.0
|
|
O
|
A:ALA291
|
4.6
|
64.4
|
1.0
|
|
HA
|
A:LEU319
|
4.6
|
89.2
|
1.0
|
|
HB3
|
A:TYR290
|
4.6
|
87.8
|
1.0
|
|
N
|
A:ALA291
|
4.6
|
67.9
|
1.0
|
|
H
|
A:ASP289
|
4.6
|
0.3
|
1.0
|
|
N
|
A:ASP288
|
4.6
|
78.4
|
1.0
|
|
HB3
|
A:LEU319
|
4.6
|
89.2
|
1.0
|
|
HB3
|
A:GLN320
|
4.6
|
91.1
|
1.0
|
|
H
|
A:ASP292
|
4.6
|
71.9
|
1.0
|
|
HB3
|
A:ASP292
|
4.7
|
72.2
|
1.0
|
|
HA
|
A:ALA291
|
4.7
|
76.0
|
1.0
|
|
HB2
|
A:ASP288
|
4.7
|
99.2
|
1.0
|
|
CA
|
A:ASP292
|
4.7
|
59.7
|
1.0
|
|
CB
|
A:ASN286
|
4.8
|
71.1
|
1.0
|
|
HA
|
A:ASP292
|
4.8
|
71.7
|
1.0
|
|
CA
|
A:ALA291
|
4.8
|
63.3
|
1.0
|
|
CA
|
A:ASP288
|
4.8
|
83.3
|
1.0
|
|
HD22
|
A:ASN286
|
4.9
|
88.4
|
1.0
|
|
O
|
A:GLN320
|
4.9
|
75.8
|
1.0
|
|
N
|
A:ASP289
|
4.9
|
0.2
|
1.0
|
|
N
|
A:GLN320
|
4.9
|
69.0
|
1.0
|
|
CA
|
A:ASN286
|
5.0
|
70.8
|
1.0
|
|
HD23
|
A:LEU319
|
5.0
|
88.9
|
1.0
|
|
Calcium binding site 3 out
of 10 in 6om2
Go back to
Calcium Binding Sites List in 6om2
Calcium binding site 3 out
of 10 in the Crystal Structure of Atypical Integrin Alphav BETA8 with Protgf-BETA1 Ligand Peptide
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of Atypical Integrin Alphav BETA8 with Protgf-BETA1 Ligand Peptide within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca2003
b:73.1
occ:1.00
|
OD1
|
A:ASP351
|
2.3
|
84.4
|
1.0
|
|
OD1
|
A:ASP349
|
2.4
|
82.2
|
1.0
|
|
OD1
|
A:ASP357
|
2.4
|
72.9
|
1.0
|
|
O
|
A:PHE355
|
2.4
|
67.2
|
1.0
|
|
OD1
|
A:ASP353
|
2.4
|
73.8
|
1.0
|
|
OD2
|
A:ASP357
|
2.4
|
73.6
|
1.0
|
|
O
|
A:HOH2112
|
2.5
|
69.5
|
1.0
|
|
CG
|
A:ASP357
|
2.7
|
72.9
|
1.0
|
|
CG
|
A:ASP353
|
3.3
|
74.9
|
1.0
|
|
CG
|
A:ASP351
|
3.4
|
86.0
|
1.0
|
|
HD22
|
A:ASN377
|
3.4
|
95.7
|
1.0
|
|
HA
|
A:ASP349
|
3.5
|
98.3
|
1.0
|
|
C
|
A:PHE355
|
3.5
|
66.3
|
1.0
|
|
CG
|
A:ASP349
|
3.5
|
82.5
|
1.0
|
|
H
|
A:PHE355
|
3.6
|
81.8
|
1.0
|
|
H
|
A:ASP351
|
3.6
|
0.9
|
1.0
|
|
OD2
|
A:ASP353
|
3.6
|
74.8
|
1.0
|
|
OD2
|
A:ASP351
|
3.7
|
86.3
|
1.0
|
|
HB2
|
A:PHE355
|
3.7
|
80.1
|
1.0
|
|
H
|
A:ASP353
|
3.8
|
91.9
|
1.0
|
|
H
|
A:GLY378
|
3.8
|
83.2
|
1.0
|
|
H
|
A:LEU350
|
4.1
|
93.2
|
1.0
|
|
HB3
|
A:ASN377
|
4.1
|
94.2
|
1.0
|
|
O
|
A:ASN356
|
4.2
|
65.5
|
1.0
|
|
C
|
A:ASN356
|
4.2
|
65.6
|
1.0
|
|
ND2
|
A:ASN377
|
4.2
|
79.8
|
1.0
|
|
CB
|
A:ASP357
|
4.2
|
72.1
|
1.0
|
|
N
|
A:PHE355
|
4.2
|
68.2
|
1.0
|
|
CA
|
A:ASP349
|
4.3
|
81.9
|
1.0
|
|
CA
|
A:PHE355
|
4.3
|
66.8
|
1.0
|
|
OD2
|
A:ASP349
|
4.3
|
83.0
|
1.0
|
|
HA
|
A:ASN356
|
4.3
|
78.8
|
1.0
|
|
N
|
A:ASP351
|
4.4
|
85.7
|
1.0
|
|
N
|
A:LEU350
|
4.4
|
77.7
|
1.0
|
|
N
|
A:ASN356
|
4.5
|
66.1
|
1.0
|
|
CB
|
A:PHE355
|
4.5
|
66.8
|
1.0
|
|
CB
|
A:ASP349
|
4.5
|
82.5
|
1.0
|
|
N
|
A:ASP357
|
4.6
|
70.0
|
1.0
|
|
HA
|
A:ASN377
|
4.6
|
91.8
|
1.0
|
|
CA
|
A:ASN356
|
4.6
|
65.7
|
1.0
|
|
CB
|
A:ASP353
|
4.6
|
76.6
|
1.0
|
|
C
|
A:ASP349
|
4.6
|
83.6
|
1.0
|
|
H
|
A:GLN352
|
4.6
|
89.6
|
1.0
|
|
N
|
A:ASP353
|
4.6
|
76.6
|
1.0
|
|
N
|
A:GLY378
|
4.7
|
69.3
|
1.0
|
|
HB2
|
A:ASP357
|
4.7
|
86.5
|
1.0
|
|
HD21
|
A:ASN377
|
4.7
|
95.7
|
1.0
|
|
O
|
A:GLY378
|
4.7
|
70.5
|
1.0
|
|
HB3
|
A:ASP353
|
4.7
|
91.9
|
1.0
|
|
CB
|
A:ASP351
|
4.7
|
88.0
|
1.0
|
|
HB3
|
A:ASP357
|
4.7
|
86.5
|
1.0
|
|
H
|
A:GLY354
|
4.8
|
90.5
|
1.0
|
|
CA
|
A:ASP357
|
4.9
|
70.4
|
1.0
|
|
CB
|
A:ASN377
|
4.9
|
78.5
|
1.0
|
|
HB3
|
A:LEU350
|
4.9
|
95.1
|
1.0
|
|
HA
|
A:ASP357
|
4.9
|
84.5
|
1.0
|
|
HB3
|
A:PHE355
|
4.9
|
80.1
|
1.0
|
|
H
|
A:ASP357
|
4.9
|
84.0
|
1.0
|
|
HD2
|
A:PHE355
|
4.9
|
82.8
|
1.0
|
|
N
|
A:GLN352
|
5.0
|
74.7
|
1.0
|
|
CA
|
A:ASP351
|
5.0
|
87.5
|
1.0
|
|
Calcium binding site 4 out
of 10 in 6om2
Go back to
Calcium Binding Sites List in 6om2
Calcium binding site 4 out
of 10 in the Crystal Structure of Atypical Integrin Alphav BETA8 with Protgf-BETA1 Ligand Peptide
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of Atypical Integrin Alphav BETA8 with Protgf-BETA1 Ligand Peptide within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca2004
b:78.9
occ:1.00
|
OD1
|
A:ASP414
|
2.3
|
87.8
|
1.0
|
|
OD1
|
A:ASP416
|
2.4
|
95.0
|
1.0
|
|
OD1
|
A:ASP422
|
2.4
|
0.2
|
1.0
|
|
O
|
A:TYR420
|
2.4
|
82.6
|
1.0
|
|
OD1
|
A:ASN418
|
2.4
|
0.1
|
1.0
|
|
OD2
|
A:ASP422
|
2.4
|
0.4
|
1.0
|
|
O
|
A:HOH2102
|
2.4
|
83.9
|
1.0
|
|
CG
|
A:ASP422
|
2.7
|
0.7
|
1.0
|
|
CG
|
A:ASP416
|
3.3
|
98.1
|
1.0
|
|
HA
|
A:ASP414
|
3.3
|
0.9
|
1.0
|
|
CG
|
A:ASN418
|
3.3
|
0.3
|
1.0
|
|
H
|
A:TYR420
|
3.4
|
0.7
|
1.0
|
|
CG
|
A:ASP414
|
3.5
|
87.0
|
1.0
|
|
HD21
|
A:ASN418
|
3.5
|
0.4
|
1.0
|
|
C
|
A:TYR420
|
3.6
|
80.6
|
1.0
|
|
OD2
|
A:ASP416
|
3.6
|
98.9
|
1.0
|
|
H
|
A:ALA438
|
3.6
|
0.7
|
1.0
|
|
HB3
|
A:ALA438
|
3.6
|
0.0
|
1.0
|
|
H
|
A:ASP416
|
3.7
|
0.7
|
1.0
|
|
ND2
|
A:ASN418
|
3.8
|
0.1
|
1.0
|
|
HB2
|
A:TYR420
|
3.8
|
99.1
|
1.0
|
|
H
|
A:ASN418
|
3.8
|
0.1
|
1.0
|
|
H
|
A:ILE415
|
3.9
|
0.1
|
1.0
|
|
CA
|
A:ASP414
|
4.0
|
84.1
|
1.0
|
|
N
|
A:TYR420
|
4.1
|
83.9
|
1.0
|
|
CB
|
A:ASP422
|
4.1
|
0.5
|
1.0
|
|
CB
|
A:ASP414
|
4.2
|
84.1
|
1.0
|
|
HB2
|
A:ASP414
|
4.2
|
0.9
|
1.0
|
|
CA
|
A:TYR420
|
4.2
|
81.5
|
1.0
|
|
N
|
A:ASP422
|
4.3
|
96.5
|
1.0
|
|
H
|
A:GLY419
|
4.3
|
0.5
|
1.0
|
|
N
|
A:ILE415
|
4.3
|
96.8
|
1.0
|
|
H
|
A:ASP422
|
4.3
|
0.8
|
1.0
|
|
N
|
A:ALA438
|
4.4
|
88.1
|
1.0
|
|
C
|
A:PRO421
|
4.4
|
79.3
|
1.0
|
|
N
|
A:ASP416
|
4.4
|
97.3
|
1.0
|
|
CB
|
A:TYR420
|
4.5
|
82.6
|
1.0
|
|
OD2
|
A:ASP414
|
4.5
|
88.6
|
1.0
|
|
C
|
A:ASP414
|
4.5
|
87.5
|
1.0
|
|
HB2
|
A:ASP422
|
4.5
|
0.8
|
1.0
|
|
CB
|
A:ASN418
|
4.5
|
0.8
|
1.0
|
|
O
|
A:ALA438
|
4.5
|
90.1
|
1.0
|
|
CB
|
A:ALA438
|
4.5
|
83.4
|
1.0
|
|
HB3
|
A:ASN418
|
4.5
|
0.8
|
1.0
|
|
HG22
|
A:ILE415
|
4.6
|
0.0
|
1.0
|
|
HD22
|
A:ASN418
|
4.6
|
0.4
|
1.0
|
|
HA
|
A:PRO421
|
4.6
|
93.8
|
1.0
|
|
CB
|
A:ASP416
|
4.6
|
0.5
|
1.0
|
|
N
|
A:PRO421
|
4.6
|
79.0
|
1.0
|
|
H
|
A:LYS417
|
4.6
|
0.8
|
1.0
|
|
N
|
A:ASN418
|
4.6
|
0.2
|
1.0
|
|
HA
|
A:ASP422
|
4.6
|
0.8
|
1.0
|
|
CA
|
A:ASP422
|
4.6
|
98.2
|
1.0
|
|
HA
|
A:ARG437
|
4.7
|
0.9
|
1.0
|
|
HB3
|
A:ARG437
|
4.7
|
0.6
|
1.0
|
|
HB3
|
A:ASP422
|
4.7
|
0.8
|
1.0
|
|
CA
|
A:PRO421
|
4.8
|
78.2
|
1.0
|
|
HB2
|
A:ALA438
|
4.8
|
0.0
|
1.0
|
|
O
|
A:PRO421
|
4.8
|
79.4
|
1.0
|
|
HB3
|
A:ASP416
|
4.8
|
0.8
|
1.0
|
|
HB3
|
A:TYR420
|
4.8
|
99.1
|
1.0
|
|
N
|
A:GLY419
|
4.9
|
89.6
|
1.0
|
|
N
|
A:LYS417
|
4.9
|
0.8
|
1.0
|
|
CA
|
A:ASP416
|
4.9
|
0.9
|
1.0
|
|
CA
|
A:ALA438
|
4.9
|
86.5
|
1.0
|
|
Calcium binding site 5 out
of 10 in 6om2
Go back to
Calcium Binding Sites List in 6om2
Calcium binding site 5 out
of 10 in the Crystal Structure of Atypical Integrin Alphav BETA8 with Protgf-BETA1 Ligand Peptide
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of Atypical Integrin Alphav BETA8 with Protgf-BETA1 Ligand Peptide within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca2002
b:94.1
occ:1.00
|
O
|
B:PRO211
|
2.1
|
94.4
|
1.0
|
|
OD1
|
B:ASN207
|
2.3
|
89.7
|
1.0
|
|
OD1
|
B:ASP209
|
2.3
|
80.5
|
1.0
|
|
OE1
|
B:GLU212
|
2.4
|
84.9
|
1.0
|
|
O
|
B:ASP209
|
2.4
|
83.0
|
1.0
|
|
OD2
|
B:ASP151
|
2.4
|
0.4
|
1.0
|
|
HA
|
B:GLU212
|
2.8
|
99.2
|
1.0
|
|
C
|
B:PRO211
|
3.1
|
96.0
|
1.0
|
|
CG
|
B:ASN207
|
3.3
|
89.7
|
1.0
|
|
CD
|
B:GLU212
|
3.3
|
87.0
|
1.0
|
|
HD21
|
B:ASN207
|
3.3
|
0.5
|
1.0
|
|
HB2
|
B:ASP151
|
3.4
|
0.9
|
1.0
|
|
CG
|
B:ASP151
|
3.4
|
0.9
|
1.0
|
|
CG
|
B:ASP209
|
3.5
|
82.6
|
1.0
|
|
C
|
B:ASP209
|
3.6
|
85.7
|
1.0
|
|
CA
|
B:GLU212
|
3.6
|
82.7
|
1.0
|
|
ND2
|
B:ASN207
|
3.7
|
90.4
|
1.0
|
|
N
|
B:GLU212
|
3.8
|
86.2
|
1.0
|
|
O
|
B:THR210
|
3.8
|
94.2
|
1.0
|
|
CB
|
B:ASP151
|
3.9
|
0.2
|
1.0
|
|
OE2
|
B:GLU212
|
3.9
|
89.0
|
1.0
|
|
C
|
B:THR210
|
4.0
|
95.9
|
1.0
|
|
HE2
|
B:HIS247
|
4.1
|
1.0
|
1.0
|
|
OD2
|
B:ASP209
|
4.2
|
82.5
|
1.0
|
|
HB3
|
B:ASP151
|
4.2
|
0.9
|
1.0
|
|
CG
|
B:GLU212
|
4.2
|
87.7
|
1.0
|
|
N
|
B:PRO211
|
4.3
|
0.4
|
1.0
|
|
H
|
B:ASP209
|
4.3
|
0.0
|
1.0
|
|
CA
|
B:PRO211
|
4.3
|
0.1
|
1.0
|
|
HG2
|
B:GLU212
|
4.3
|
0.2
|
1.0
|
|
CA
|
B:ASP209
|
4.3
|
85.8
|
1.0
|
|
CB
|
B:GLU212
|
4.4
|
84.2
|
1.0
|
|
N
|
B:ASP209
|
4.4
|
83.3
|
1.0
|
|
HB3
|
B:GLU212
|
4.5
|
0.1
|
1.0
|
|
CB
|
B:ASP209
|
4.5
|
86.1
|
1.0
|
|
NE2
|
B:HIS247
|
4.5
|
87.5
|
1.0
|
|
HD22
|
B:ASN207
|
4.5
|
0.5
|
1.0
|
|
OD1
|
B:ASP151
|
4.5
|
1.0
|
1.0
|
|
N
|
B:THR210
|
4.5
|
95.0
|
1.0
|
|
HD2
|
B:HIS247
|
4.6
|
0.6
|
1.0
|
|
H
|
B:GLY213
|
4.6
|
0.1
|
1.0
|
|
CB
|
B:ASN207
|
4.6
|
90.1
|
1.0
|
|
HB2
|
B:ASN207
|
4.6
|
0.1
|
1.0
|
|
H
|
B:GLU212
|
4.6
|
0.5
|
1.0
|
|
HB3
|
B:TYR157
|
4.7
|
0.7
|
1.0
|
|
CD2
|
B:HIS247
|
4.8
|
85.5
|
1.0
|
|
CA
|
B:THR210
|
4.8
|
97.4
|
1.0
|
|
C
|
B:GLU212
|
4.8
|
80.4
|
1.0
|
|
HG2
|
B:PRO211
|
4.8
|
0.3
|
1.0
|
|
H
|
B:ILE208
|
4.8
|
0.4
|
1.0
|
|
HA
|
B:THR210
|
4.8
|
0.8
|
1.0
|
|
O
|
B:VAL150
|
4.9
|
0.3
|
1.0
|
|
HB2
|
B:ASP209
|
4.9
|
0.3
|
1.0
|
|
HA
|
B:PRO211
|
5.0
|
0.3
|
1.0
|
|
N
|
B:GLY213
|
5.0
|
0.1
|
1.0
|
|
Calcium binding site 6 out
of 10 in 6om2
Go back to
Calcium Binding Sites List in 6om2
Calcium binding site 6 out
of 10 in the Crystal Structure of Atypical Integrin Alphav BETA8 with Protgf-BETA1 Ligand Peptide
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of Atypical Integrin Alphav BETA8 with Protgf-BETA1 Ligand Peptide within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca602
b:73.5
occ:1.00
|
OD1
|
C:ASP234
|
2.3
|
79.0
|
1.0
|
|
OD1
|
C:ASN232
|
2.3
|
71.9
|
1.0
|
|
OD2
|
C:ASP238
|
2.4
|
81.4
|
1.0
|
|
OD1
|
C:ASP238
|
2.4
|
83.5
|
1.0
|
|
OD2
|
C:ASP234
|
2.4
|
81.2
|
1.0
|
|
OD1
|
C:ASP230
|
2.4
|
92.3
|
1.0
|
|
O
|
C:ILE236
|
2.5
|
72.3
|
1.0
|
|
CG
|
C:ASP238
|
2.6
|
80.1
|
1.0
|
|
CG
|
C:ASP234
|
2.6
|
82.7
|
1.0
|
|
HA
|
C:ASP230
|
3.3
|
97.8
|
1.0
|
|
HD21
|
C:ASN232
|
3.3
|
97.1
|
1.0
|
|
CG
|
C:ASN232
|
3.3
|
76.2
|
1.0
|
|
H
|
C:PHE231
|
3.4
|
92.5
|
1.0
|
|
CG
|
C:ASP230
|
3.4
|
91.4
|
1.0
|
|
H
|
C:ASP234
|
3.5
|
0.1
|
1.0
|
|
H
|
C:ASN232
|
3.6
|
81.3
|
1.0
|
|
ND2
|
C:ASN232
|
3.7
|
80.9
|
1.0
|
|
C
|
C:ILE236
|
3.7
|
73.2
|
1.0
|
|
HB
|
C:ILE236
|
3.9
|
0.0
|
1.0
|
|
CB
|
C:ASP238
|
3.9
|
74.6
|
1.0
|
|
OD1
|
C:ASP257
|
3.9
|
91.4
|
1.0
|
|
CB
|
C:ASP234
|
4.0
|
89.2
|
1.0
|
|
H
|
C:GLY258
|
4.0
|
0.7
|
1.0
|
|
CA
|
C:ASP230
|
4.1
|
81.5
|
1.0
|
|
N
|
C:ASP238
|
4.1
|
74.1
|
1.0
|
|
H
|
C:ASP238
|
4.1
|
88.9
|
1.0
|
|
N
|
C:PHE231
|
4.2
|
77.1
|
1.0
|
|
HB2
|
C:ASP238
|
4.2
|
89.5
|
1.0
|
|
OD2
|
C:ASP230
|
4.2
|
95.5
|
1.0
|
|
H
|
C:ILE236
|
4.2
|
0.5
|
1.0
|
|
HB3
|
C:ASP234
|
4.2
|
0.1
|
1.0
|
|
CB
|
C:ASP230
|
4.3
|
85.5
|
1.0
|
|
N
|
C:ASN232
|
4.3
|
67.8
|
1.0
|
|
N
|
C:ASP234
|
4.3
|
83.4
|
1.0
|
|
C
|
C:ASP237
|
4.3
|
93.8
|
1.0
|
|
N
|
C:ILE236
|
4.4
|
83.8
|
1.0
|
|
CA
|
C:ASP238
|
4.5
|
73.1
|
1.0
|
|
CA
|
C:ILE236
|
4.5
|
80.1
|
1.0
|
|
HA
|
C:ASP237
|
4.5
|
0.8
|
1.0
|
|
HD22
|
C:ASN232
|
4.5
|
97.1
|
1.0
|
|
HA
|
C:ASP238
|
4.5
|
87.8
|
1.0
|
|
HB2
|
C:ASP230
|
4.5
|
0.6
|
1.0
|
|
H
|
C:GLY233
|
4.6
|
0.0
|
1.0
|
|
H
|
C:GLY235
|
4.6
|
0.9
|
1.0
|
|
HB3
|
C:ASP238
|
4.6
|
89.5
|
1.0
|
|
CB
|
C:ASN232
|
4.6
|
76.5
|
1.0
|
|
HB2
|
C:ASP234
|
4.6
|
0.1
|
1.0
|
|
HA
|
C:ASP257
|
4.6
|
97.2
|
1.0
|
|
CB
|
C:ILE236
|
4.7
|
83.4
|
1.0
|
|
N
|
C:ASP237
|
4.7
|
0.7
|
1.0
|
|
C
|
C:ASP230
|
4.7
|
80.5
|
1.0
|
|
CA
|
C:ASP234
|
4.7
|
89.1
|
1.0
|
|
O
|
C:ASP237
|
4.7
|
95.6
|
1.0
|
|
CA
|
C:ASP237
|
4.7
|
94.8
|
1.0
|
|
HD11
|
C:LEU264
|
4.8
|
0.5
|
1.0
|
|
HG22
|
C:ILE236
|
4.9
|
95.2
|
1.0
|
|
N
|
C:GLY233
|
4.9
|
96.7
|
1.0
|
|
N
|
C:GLY258
|
4.9
|
89.8
|
1.0
|
|
CA
|
C:ASN232
|
4.9
|
73.2
|
1.0
|
|
N
|
C:GLY235
|
4.9
|
91.6
|
1.0
|
|
Calcium binding site 7 out
of 10 in 6om2
Go back to
Calcium Binding Sites List in 6om2
Calcium binding site 7 out
of 10 in the Crystal Structure of Atypical Integrin Alphav BETA8 with Protgf-BETA1 Ligand Peptide
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of Atypical Integrin Alphav BETA8 with Protgf-BETA1 Ligand Peptide within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca603
b:61.7
occ:1.00
|
O
|
C:TYR290
|
2.3
|
63.7
|
1.0
|
|
OD1
|
C:ASP288
|
2.3
|
85.1
|
1.0
|
|
OD1
|
C:ASN286
|
2.3
|
75.5
|
1.0
|
|
OD2
|
C:ASP292
|
2.4
|
66.7
|
1.0
|
|
OD1
|
C:ASP292
|
2.4
|
69.5
|
1.0
|
|
OD1
|
C:ASP284
|
2.4
|
70.5
|
1.0
|
|
O
|
C:HOH701
|
2.5
|
67.4
|
1.0
|
|
OD2
|
C:ASP288
|
2.5
|
84.5
|
1.0
|
|
CG
|
C:ASP292
|
2.7
|
67.5
|
1.0
|
|
CG
|
C:ASP288
|
2.7
|
85.2
|
1.0
|
|
H
|
C:TYR290
|
3.2
|
83.9
|
1.0
|
|
HB2
|
C:TYR290
|
3.2
|
84.6
|
1.0
|
|
HA
|
C:ASP284
|
3.3
|
81.5
|
1.0
|
|
C
|
C:TYR290
|
3.4
|
66.4
|
1.0
|
|
H
|
C:ILE285
|
3.4
|
74.3
|
1.0
|
|
CG
|
C:ASN286
|
3.5
|
75.2
|
1.0
|
|
H
|
C:ASN286
|
3.5
|
86.9
|
1.0
|
|
CG
|
C:ASP284
|
3.6
|
71.6
|
1.0
|
|
HD21
|
C:ASN286
|
3.6
|
91.9
|
1.0
|
|
H
|
C:ASP288
|
3.9
|
99.2
|
1.0
|
|
N
|
C:TYR290
|
3.9
|
69.9
|
1.0
|
|
CB
|
C:TYR290
|
3.9
|
70.5
|
1.0
|
|
CA
|
C:TYR290
|
4.0
|
69.9
|
1.0
|
|
ND2
|
C:ASN286
|
4.0
|
76.6
|
1.0
|
|
H
|
C:GLN320
|
4.1
|
76.7
|
1.0
|
|
CA
|
C:ASP284
|
4.1
|
67.9
|
1.0
|
|
N
|
C:ILE285
|
4.1
|
61.9
|
1.0
|
|
CB
|
C:ASP292
|
4.2
|
66.2
|
1.0
|
|
HB3
|
C:TYR290
|
4.2
|
84.6
|
1.0
|
|
CB
|
C:ASP288
|
4.2
|
86.3
|
1.0
|
|
HG22
|
C:ILE285
|
4.3
|
73.1
|
1.0
|
|
CB
|
C:ASP284
|
4.3
|
71.0
|
1.0
|
|
H
|
C:ASP292
|
4.3
|
82.4
|
1.0
|
|
N
|
C:ASN286
|
4.3
|
72.4
|
1.0
|
|
HG
|
C:LEU319
|
4.3
|
87.4
|
1.0
|
|
HB2
|
C:ASP284
|
4.3
|
85.1
|
1.0
|
|
N
|
C:ASP292
|
4.4
|
68.7
|
1.0
|
|
H
|
C:ASP289
|
4.4
|
0.4
|
1.0
|
|
HB3
|
C:GLN320
|
4.5
|
81.6
|
1.0
|
|
OD2
|
C:ASP284
|
4.5
|
73.3
|
1.0
|
|
HB2
|
C:ASP292
|
4.5
|
79.4
|
1.0
|
|
HB3
|
C:ASP288
|
4.6
|
0.6
|
1.0
|
|
N
|
C:ALA291
|
4.6
|
76.3
|
1.0
|
|
C
|
C:ASP284
|
4.6
|
65.7
|
1.0
|
|
HA
|
C:LEU319
|
4.6
|
90.2
|
1.0
|
|
C
|
C:ALA291
|
4.6
|
71.3
|
1.0
|
|
N
|
C:ASP288
|
4.7
|
82.7
|
1.0
|
|
CB
|
C:ASN286
|
4.7
|
73.3
|
1.0
|
|
HB3
|
C:ASP292
|
4.7
|
79.4
|
1.0
|
|
HB2
|
C:ASP288
|
4.7
|
0.6
|
1.0
|
|
HB3
|
C:LEU319
|
4.7
|
89.8
|
1.0
|
|
HA
|
C:ALA291
|
4.8
|
87.7
|
1.0
|
|
CA
|
C:ASP292
|
4.8
|
67.5
|
1.0
|
|
N
|
C:GLN320
|
4.8
|
63.9
|
1.0
|
|
HD22
|
C:ASN286
|
4.8
|
91.9
|
1.0
|
|
N
|
C:ASP289
|
4.8
|
89.5
|
1.0
|
|
O
|
C:GLN320
|
4.8
|
68.3
|
1.0
|
|
HA
|
C:ASP292
|
4.8
|
81.0
|
1.0
|
|
HA
|
C:TYR290
|
4.9
|
83.9
|
1.0
|
|
CA
|
C:ALA291
|
4.9
|
73.1
|
1.0
|
|
CA
|
C:ASP288
|
4.9
|
86.2
|
1.0
|
|
CA
|
C:ASN286
|
4.9
|
72.9
|
1.0
|
|
HD2
|
C:TYR290
|
5.0
|
90.1
|
1.0
|
|
Calcium binding site 8 out
of 10 in 6om2
Go back to
Calcium Binding Sites List in 6om2
Calcium binding site 8 out
of 10 in the Crystal Structure of Atypical Integrin Alphav BETA8 with Protgf-BETA1 Ligand Peptide
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of Atypical Integrin Alphav BETA8 with Protgf-BETA1 Ligand Peptide within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca604
b:66.7
occ:1.00
|
O
|
C:PHE355
|
2.2
|
71.1
|
1.0
|
|
OD1
|
C:ASP351
|
2.3
|
79.8
|
1.0
|
|
O
|
C:HOH713
|
2.4
|
74.3
|
1.0
|
|
OD1
|
C:ASP353
|
2.4
|
83.6
|
1.0
|
|
OD1
|
C:ASP357
|
2.4
|
85.5
|
1.0
|
|
OD1
|
C:ASP349
|
2.4
|
75.4
|
1.0
|
|
OD2
|
C:ASP357
|
2.5
|
86.2
|
1.0
|
|
CG
|
C:ASP357
|
2.7
|
85.3
|
1.0
|
|
H
|
C:ASP351
|
3.2
|
96.7
|
1.0
|
|
HD22
|
C:ASN377
|
3.2
|
93.7
|
1.0
|
|
HA
|
C:ASP349
|
3.3
|
91.0
|
1.0
|
|
CG
|
C:ASP353
|
3.4
|
84.7
|
1.0
|
|
CG
|
C:ASP351
|
3.4
|
81.3
|
1.0
|
|
C
|
C:PHE355
|
3.4
|
71.2
|
1.0
|
|
H
|
C:PHE355
|
3.5
|
87.5
|
1.0
|
|
H
|
C:LEU350
|
3.5
|
81.0
|
1.0
|
|
H
|
C:ASP353
|
3.6
|
0.8
|
1.0
|
|
CG
|
C:ASP349
|
3.7
|
77.5
|
1.0
|
|
OD2
|
C:ASP353
|
3.8
|
84.5
|
1.0
|
|
HB2
|
C:PHE355
|
3.9
|
84.3
|
1.0
|
|
OD2
|
C:ASP351
|
3.9
|
81.9
|
1.0
|
|
N
|
C:LEU350
|
4.0
|
67.5
|
1.0
|
|
ND2
|
C:ASN377
|
4.0
|
78.1
|
1.0
|
|
N
|
C:ASP351
|
4.0
|
80.6
|
1.0
|
|
CA
|
C:ASP349
|
4.0
|
75.8
|
1.0
|
|
HA
|
C:ASN356
|
4.2
|
90.3
|
1.0
|
|
N
|
C:PHE355
|
4.2
|
72.9
|
1.0
|
|
CB
|
C:ASP357
|
4.2
|
84.4
|
1.0
|
|
C
|
C:ASP349
|
4.2
|
75.5
|
1.0
|
|
CA
|
C:PHE355
|
4.3
|
72.0
|
1.0
|
|
C
|
C:ASN356
|
4.3
|
73.1
|
1.0
|
|
H
|
C:GLY378
|
4.3
|
80.8
|
1.0
|
|
H
|
C:GLN352
|
4.3
|
87.0
|
1.0
|
|
HD21
|
C:ASN377
|
4.3
|
93.7
|
1.0
|
|
HB3
|
C:ASN377
|
4.4
|
92.7
|
1.0
|
|
N
|
C:ASP353
|
4.4
|
86.5
|
1.0
|
|
N
|
C:ASN356
|
4.4
|
76.7
|
1.0
|
|
N
|
C:ASP357
|
4.4
|
85.6
|
1.0
|
|
CB
|
C:ASP349
|
4.5
|
78.1
|
1.0
|
|
HB3
|
C:LEU350
|
4.5
|
81.2
|
1.0
|
|
CA
|
C:ASN356
|
4.5
|
75.3
|
1.0
|
|
O
|
C:ASN356
|
4.5
|
72.6
|
1.0
|
|
OD2
|
C:ASP349
|
4.5
|
79.3
|
1.0
|
|
CB
|
C:ASP353
|
4.5
|
86.7
|
1.0
|
|
CB
|
C:PHE355
|
4.5
|
70.3
|
1.0
|
|
N
|
C:GLN352
|
4.6
|
72.5
|
1.0
|
|
HB2
|
C:ASP357
|
4.6
|
0.3
|
1.0
|
|
HB3
|
C:ASP353
|
4.6
|
0.0
|
1.0
|
|
H
|
C:ASP357
|
4.7
|
0.7
|
1.0
|
|
CB
|
C:ASP351
|
4.7
|
82.7
|
1.0
|
|
CA
|
C:ASP351
|
4.7
|
82.5
|
1.0
|
|
HB3
|
C:ASP357
|
4.7
|
0.3
|
1.0
|
|
CA
|
C:ASP357
|
4.8
|
84.3
|
1.0
|
|
H
|
C:GLY354
|
4.8
|
86.6
|
1.0
|
|
HA
|
C:ASN377
|
4.8
|
90.7
|
1.0
|
|
HA
|
C:ASP357
|
4.9
|
0.2
|
1.0
|
|
O
|
C:GLY348
|
4.9
|
81.6
|
1.0
|
|
C
|
C:ASP351
|
4.9
|
83.4
|
1.0
|
|
CA
|
C:LEU350
|
4.9
|
68.5
|
1.0
|
|
CA
|
C:ASP353
|
4.9
|
87.1
|
1.0
|
|
HB3
|
C:PHE355
|
4.9
|
84.3
|
1.0
|
|
C
|
C:LEU350
|
5.0
|
70.4
|
1.0
|
|
Calcium binding site 9 out
of 10 in 6om2
Go back to
Calcium Binding Sites List in 6om2
Calcium binding site 9 out
of 10 in the Crystal Structure of Atypical Integrin Alphav BETA8 with Protgf-BETA1 Ligand Peptide
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Crystal Structure of Atypical Integrin Alphav BETA8 with Protgf-BETA1 Ligand Peptide within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca605
b:82.1
occ:1.00
|
O
|
C:TYR420
|
2.3
|
80.0
|
1.0
|
|
OD1
|
C:ASP414
|
2.3
|
77.8
|
1.0
|
|
OD1
|
C:ASP416
|
2.3
|
80.7
|
1.0
|
|
OD1
|
C:ASN418
|
2.4
|
85.5
|
1.0
|
|
OD1
|
C:ASP422
|
2.4
|
80.2
|
1.0
|
|
O
|
C:HOH722
|
2.4
|
60.9
|
1.0
|
|
OD2
|
C:ASP422
|
2.5
|
82.9
|
1.0
|
|
CG
|
C:ASP422
|
2.7
|
80.5
|
1.0
|
|
HA
|
C:ASP414
|
3.3
|
89.3
|
1.0
|
|
CG
|
C:ASP416
|
3.4
|
82.8
|
1.0
|
|
CG
|
C:ASN418
|
3.4
|
86.4
|
1.0
|
|
H
|
C:TYR420
|
3.4
|
99.9
|
1.0
|
|
C
|
C:TYR420
|
3.5
|
78.6
|
1.0
|
|
HB2
|
C:TYR420
|
3.5
|
94.6
|
1.0
|
|
CG
|
C:ASP414
|
3.5
|
77.6
|
1.0
|
|
H
|
C:ALA438
|
3.6
|
91.3
|
1.0
|
|
H
|
C:ASP416
|
3.7
|
97.2
|
1.0
|
|
HD21
|
C:ASN418
|
3.7
|
0.2
|
1.0
|
|
OD2
|
C:ASP416
|
3.7
|
83.8
|
1.0
|
|
HB3
|
C:ALA438
|
3.8
|
88.9
|
1.0
|
|
H
|
C:ASN418
|
3.9
|
0.3
|
1.0
|
|
ND2
|
C:ASN418
|
3.9
|
84.3
|
1.0
|
|
H
|
C:ILE415
|
4.0
|
1.0
|
1.0
|
|
CA
|
C:ASP414
|
4.0
|
74.4
|
1.0
|
|
N
|
C:TYR420
|
4.1
|
83.2
|
1.0
|
|
CA
|
C:TYR420
|
4.1
|
79.7
|
1.0
|
|
CB
|
C:ASP422
|
4.2
|
78.2
|
1.0
|
|
CB
|
C:ASP414
|
4.2
|
75.3
|
1.0
|
|
CB
|
C:TYR420
|
4.2
|
78.8
|
1.0
|
|
HB2
|
C:ASP414
|
4.3
|
90.4
|
1.0
|
|
N
|
C:ASP422
|
4.3
|
75.8
|
1.0
|
|
N
|
C:ILE415
|
4.4
|
85.0
|
1.0
|
|
C
|
C:PRO421
|
4.4
|
71.8
|
1.0
|
|
N
|
C:ALA438
|
4.4
|
76.1
|
1.0
|
|
O
|
C:ALA438
|
4.4
|
79.2
|
1.0
|
|
H
|
C:ASP422
|
4.4
|
91.0
|
1.0
|
|
C
|
C:ASP414
|
4.4
|
76.2
|
1.0
|
|
N
|
C:ASP416
|
4.5
|
81.0
|
1.0
|
|
HA
|
C:PRO421
|
4.5
|
87.7
|
1.0
|
|
HB3
|
C:TYR420
|
4.5
|
94.6
|
1.0
|
|
OD2
|
C:ASP414
|
4.5
|
79.4
|
1.0
|
|
HG22
|
C:ILE415
|
4.5
|
0.8
|
1.0
|
|
N
|
C:PRO421
|
4.5
|
74.1
|
1.0
|
|
HB2
|
C:ASP422
|
4.6
|
93.8
|
1.0
|
|
CB
|
C:ASN418
|
4.6
|
90.1
|
1.0
|
|
HB3
|
C:ARG437
|
4.6
|
95.8
|
1.0
|
|
HA
|
C:ARG437
|
4.6
|
92.6
|
1.0
|
|
HB3
|
C:ASN418
|
4.6
|
0.1
|
1.0
|
|
CB
|
C:ASP416
|
4.6
|
84.3
|
1.0
|
|
CA
|
C:PRO421
|
4.7
|
73.1
|
1.0
|
|
N
|
C:ASN418
|
4.7
|
93.6
|
1.0
|
|
CA
|
C:ASP422
|
4.7
|
75.5
|
1.0
|
|
CB
|
C:ALA438
|
4.7
|
74.1
|
1.0
|
|
HA
|
C:ASP422
|
4.7
|
90.6
|
1.0
|
|
HB3
|
C:ASP422
|
4.7
|
93.8
|
1.0
|
|
H
|
C:LYS417
|
4.7
|
0.8
|
1.0
|
|
O
|
C:PRO421
|
4.8
|
70.7
|
1.0
|
|
HD22
|
C:ASN418
|
4.8
|
0.2
|
1.0
|
|
HB3
|
C:ASP416
|
4.9
|
0.2
|
1.0
|
|
H
|
C:GLY419
|
5.0
|
0.3
|
1.0
|
|
CA
|
C:ALA438
|
5.0
|
75.9
|
1.0
|
|
Calcium binding site 10 out
of 10 in 6om2
Go back to
Calcium Binding Sites List in 6om2
Calcium binding site 10 out
of 10 in the Crystal Structure of Atypical Integrin Alphav BETA8 with Protgf-BETA1 Ligand Peptide
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Crystal Structure of Atypical Integrin Alphav BETA8 with Protgf-BETA1 Ligand Peptide within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca3204
b:92.5
occ:1.00
|
O
|
D:PRO211
|
2.1
|
90.7
|
1.0
|
|
OD1
|
D:ASN207
|
2.3
|
94.4
|
1.0
|
|
OD1
|
D:ASP209
|
2.3
|
71.5
|
1.0
|
|
OE1
|
D:GLU212
|
2.4
|
0.9
|
1.0
|
|
O
|
D:ASP209
|
2.4
|
73.5
|
1.0
|
|
OD2
|
D:ASP151
|
2.4
|
0.2
|
1.0
|
|
HA
|
D:GLU212
|
2.9
|
0.2
|
1.0
|
|
C
|
D:PRO211
|
3.2
|
89.8
|
1.0
|
|
HD21
|
D:ASN207
|
3.3
|
0.6
|
1.0
|
|
CG
|
D:ASN207
|
3.3
|
93.4
|
1.0
|
|
CD
|
D:GLU212
|
3.3
|
0.2
|
1.0
|
|
HB2
|
D:ASP151
|
3.5
|
0.8
|
1.0
|
|
CG
|
D:ASP209
|
3.5
|
74.7
|
1.0
|
|
CG
|
D:ASP151
|
3.5
|
0.4
|
1.0
|
|
C
|
D:ASP209
|
3.6
|
78.2
|
1.0
|
|
ND2
|
D:ASN207
|
3.7
|
92.2
|
1.0
|
|
CA
|
D:GLU212
|
3.7
|
99.3
|
1.0
|
|
N
|
D:GLU212
|
3.9
|
0.1
|
1.0
|
|
O
|
D:THR210
|
3.9
|
85.1
|
1.0
|
|
OE2
|
D:GLU212
|
4.0
|
0.4
|
1.0
|
|
CB
|
D:ASP151
|
4.0
|
0.2
|
1.0
|
|
HE2
|
D:HIS247
|
4.1
|
1.0
|
1.0
|
|
C
|
D:THR210
|
4.1
|
89.4
|
1.0
|
|
OD2
|
D:ASP209
|
4.2
|
73.7
|
1.0
|
|
H
|
D:ASP209
|
4.2
|
94.8
|
1.0
|
|
HB3
|
D:ASP151
|
4.3
|
0.8
|
1.0
|
|
N
|
D:PRO211
|
4.3
|
98.8
|
1.0
|
|
CG
|
D:GLU212
|
4.3
|
0.7
|
1.0
|
|
CA
|
D:ASP209
|
4.3
|
81.3
|
1.0
|
|
N
|
D:ASP209
|
4.3
|
79.0
|
1.0
|
|
CA
|
D:PRO211
|
4.3
|
94.4
|
1.0
|
|
CB
|
D:GLU212
|
4.4
|
98.9
|
1.0
|
|
HG2
|
D:GLU212
|
4.4
|
0.2
|
1.0
|
|
CB
|
D:ASP209
|
4.5
|
81.0
|
1.0
|
|
HD22
|
D:ASN207
|
4.5
|
0.6
|
1.0
|
|
HB3
|
D:GLU212
|
4.5
|
0.7
|
1.0
|
|
NE2
|
D:HIS247
|
4.5
|
88.3
|
1.0
|
|
HB3
|
D:TYR157
|
4.5
|
0.7
|
1.0
|
|
OD1
|
D:ASP151
|
4.6
|
0.2
|
1.0
|
|
N
|
D:THR210
|
4.6
|
95.8
|
1.0
|
|
HD2
|
D:HIS247
|
4.6
|
0.6
|
1.0
|
|
CB
|
D:ASN207
|
4.6
|
94.0
|
1.0
|
|
HB2
|
D:ASN207
|
4.6
|
0.8
|
1.0
|
|
H
|
D:GLY213
|
4.7
|
0.0
|
1.0
|
|
H
|
D:GLU212
|
4.7
|
0.7
|
1.0
|
|
H
|
D:ILE208
|
4.8
|
95.4
|
1.0
|
|
HG2
|
D:PRO211
|
4.8
|
0.6
|
1.0
|
|
CD2
|
D:HIS247
|
4.8
|
83.8
|
1.0
|
|
CA
|
D:THR210
|
4.8
|
94.1
|
1.0
|
|
C
|
D:GLU212
|
4.9
|
95.9
|
1.0
|
|
HA
|
D:THR210
|
4.9
|
1.0
|
1.0
|
|
HB2
|
D:ASP209
|
4.9
|
97.2
|
1.0
|
|
O
|
D:VAL150
|
4.9
|
0.1
|
1.0
|
|
Reference:
J.C.Wang,
R.E.Iacob,
J.R.Engen,
T.A.Springer.
Crystal Structure of Atypical Integrin Alphav BETA8 Nat Commun 2019.
ISSN: ESSN 2041-1723
Page generated: Tue Jul 16 12:33:18 2024
|
