Calcium in PDB 6org: Crystal Structure of SPGH29

The structure of Crystal Structure of SPGH29, PDB code: 6org was solved by B.Pluvinage, A.B.Boraston, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.54 / 1.72
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	60.920, 117.160, 64.901, 90.00, 89.97, 90.00
R / Rfree (%)	17.2 / 20.3

The binding sites of Calcium atom in the Crystal Structure of SPGH29 (pdb code 6org). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of SPGH29, PDB code: 6org:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of SPGH29


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of SPGH29 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca601 b:24.8 occ:1.00 O A:HIS346 2.5 21.8 1.0 OG A:SER354 2.7 23.9 1.0 O A:LEU351 2.7 28.6 1.0 O A:THR443 2.7 20.6 1.0 O A:HOH934 2.9 27.7 1.0 OD1 A:ASP349 2.9 27.0 1.0 O A:SER354 3.0 23.3 1.0 C A:HIS346 3.6 21.3 1.0 C A:SER354 3.7 26.9 1.0 C A:LEU351 3.8 37.2 1.0 CG A:ASP349 3.9 26.8 1.0 C A:THR443 3.9 19.4 1.0 CB A:SER354 3.9 25.5 1.0 N A:LEU351 4.1 34.3 1.0 OD2 A:ASP349 4.1 28.2 1.0 CA A:SER354 4.2 28.4 1.0 CA A:HIS346 4.3 20.7 1.0 CA A:LEU351 4.4 32.1 1.0 N A:SER354 4.4 30.9 1.0 CB A:HIS346 4.4 23.5 1.0 CB A:LEU351 4.5 37.1 1.0 O A:HOH1067 4.5 36.9 1.0 CA A:THR443 4.6 17.2 1.0 N A:SER355 4.6 25.0 1.0 N A:LEU347 4.7 20.1 1.0 CA A:LEU347 4.9 19.7 1.0 N A:ASP349 4.9 24.3 1.0 C A:LEU347 4.9 21.6 1.0 CB A:THR443 4.9 20.4 1.0 N A:GLU352 4.9 35.4 1.0 N A:LYS444 5.0 18.9 1.0 CA A:SER355 5.0 24.3 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of SPGH29


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of SPGH29 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca601 b:24.9 occ:1.00 O B:HIS346 2.5 25.3 1.0 O B:LEU351 2.6 41.5 1.0 OG B:SER354 2.7 29.2 1.0 O B:THR443 2.7 19.6 1.0 OD1 B:ASP349 2.8 27.8 1.0 O B:HOH1011 2.8 30.8 1.0 O B:SER354 2.9 25.8 1.0 C B:SER354 3.7 25.6 1.0 C B:HIS346 3.7 23.1 1.0 CG B:ASP349 3.8 37.0 1.0 C B:LEU351 3.8 37.2 1.0 C B:THR443 3.9 18.7 1.0 CB B:SER354 3.9 27.7 1.0 CA B:SER354 4.1 26.8 1.0 OD2 B:ASP349 4.1 32.0 1.0 N B:SER354 4.1 30.4 1.0 N B:LEU351 4.2 28.9 1.0 CA B:HIS346 4.4 22.0 1.0 CA B:LEU351 4.4 32.7 1.0 CB B:LEU351 4.4 31.1 1.0 CB B:HIS346 4.5 19.8 1.0 CA B:THR443 4.5 18.0 1.0 N B:SER355 4.7 21.3 1.0 CB B:THR443 4.7 18.9 1.0 N B:LEU347 4.8 20.4 1.0 N B:ASP349 4.8 29.1 1.0 N B:GLU352 4.9 40.3 1.0 CA B:LEU347 4.9 21.7 1.0 C B:LEU347 4.9 24.8 1.0 N B:LYS444 5.0 18.2 1.0 N B:GLY350 5.0 37.3 1.0

J.K.Hobbs, B.Pluvinage, M.Robb, S.P.Smith, A.B.Boraston. Two Complementary Alpha-Fucosidases Fromstreptococcus Pneumoniaepromote Complete Degradation of Host-Derived Carbohydrate Antigens. J.Biol.Chem. V. 294 12670 2019.
ISSN: ESSN 1083-351X
PubMed: 31266803
DOI: 10.1074/JBC.RA119.009368