Calcium in PDB 6oy3: NHTMEM16 L302A +CA2+ in Nanodiscs
Calcium Binding Sites:
The binding sites of Calcium atom in the NHTMEM16 L302A +CA2+ in Nanodiscs
(pdb code 6oy3). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the
NHTMEM16 L302A +CA2+ in Nanodiscs, PDB code: 6oy3:
Jump to Calcium binding site number:
1;
2;
3;
4;
Calcium binding site 1 out
of 4 in 6oy3
Go back to
Calcium Binding Sites List in 6oy3
Calcium binding site 1 out
of 4 in the NHTMEM16 L302A +CA2+ in Nanodiscs
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of NHTMEM16 L302A +CA2+ in Nanodiscs within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca801
b:42.5
occ:1.00
|
OE1
|
B:GLU535
|
2.5
|
28.3
|
1.0
|
OD1
|
B:ASN448
|
2.5
|
24.9
|
1.0
|
OE2
|
B:GLU535
|
3.0
|
28.3
|
1.0
|
CD
|
B:GLU535
|
3.0
|
28.3
|
1.0
|
OE2
|
B:GLU506
|
3.1
|
23.2
|
1.0
|
CA
|
B:CA802
|
3.2
|
52.5
|
1.0
|
CG
|
B:ASN448
|
3.6
|
24.9
|
1.0
|
OE1
|
B:GLU452
|
3.7
|
28.2
|
1.0
|
CD
|
B:GLU506
|
3.8
|
23.2
|
1.0
|
CG
|
B:GLU535
|
4.4
|
28.3
|
1.0
|
OE1
|
B:GLU506
|
4.4
|
23.2
|
1.0
|
CG
|
B:GLU506
|
4.4
|
23.2
|
1.0
|
CB
|
B:ASN448
|
4.5
|
24.9
|
1.0
|
ND2
|
B:ASN531
|
4.5
|
26.8
|
1.0
|
ND2
|
B:ASN448
|
4.6
|
24.9
|
1.0
|
CD
|
B:GLU452
|
4.8
|
28.2
|
1.0
|
|
Calcium binding site 2 out
of 4 in 6oy3
Go back to
Calcium Binding Sites List in 6oy3
Calcium binding site 2 out
of 4 in the NHTMEM16 L302A +CA2+ in Nanodiscs
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of NHTMEM16 L302A +CA2+ in Nanodiscs within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca802
b:52.5
occ:1.00
|
OE2
|
B:GLU452
|
2.5
|
28.2
|
1.0
|
OE2
|
B:GLU535
|
2.5
|
28.3
|
1.0
|
OE1
|
B:GLU452
|
2.6
|
28.2
|
1.0
|
CD
|
B:GLU452
|
2.8
|
28.2
|
1.0
|
CA
|
B:CA801
|
3.2
|
42.5
|
1.0
|
OD1
|
B:ASP503
|
3.3
|
24.5
|
1.0
|
CD
|
B:GLU535
|
3.6
|
28.3
|
1.0
|
OD1
|
B:ASN448
|
3.9
|
24.9
|
1.0
|
CG
|
B:GLU506
|
4.0
|
23.2
|
1.0
|
CD
|
B:GLU506
|
4.1
|
23.2
|
1.0
|
CG
|
B:GLU452
|
4.2
|
28.2
|
1.0
|
OE1
|
B:GLU535
|
4.2
|
28.3
|
1.0
|
CB
|
B:GLU506
|
4.2
|
23.2
|
1.0
|
OE2
|
B:GLU506
|
4.4
|
23.2
|
1.0
|
CG
|
B:ASP503
|
4.5
|
24.5
|
1.0
|
OE1
|
B:GLU506
|
4.5
|
23.2
|
1.0
|
CG
|
B:GLU535
|
4.7
|
28.3
|
1.0
|
OD1
|
B:ASP539
|
4.7
|
27.8
|
1.0
|
CG
|
B:ASN448
|
4.9
|
24.9
|
1.0
|
CB
|
B:GLU452
|
5.0
|
28.2
|
1.0
|
|
Calcium binding site 3 out
of 4 in 6oy3
Go back to
Calcium Binding Sites List in 6oy3
Calcium binding site 3 out
of 4 in the NHTMEM16 L302A +CA2+ in Nanodiscs
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of NHTMEM16 L302A +CA2+ in Nanodiscs within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca801
b:42.5
occ:1.00
|
OE1
|
A:GLU535
|
2.5
|
28.3
|
1.0
|
OD1
|
A:ASN448
|
2.5
|
24.9
|
1.0
|
OE2
|
A:GLU535
|
3.0
|
28.3
|
1.0
|
CD
|
A:GLU535
|
3.0
|
28.3
|
1.0
|
OE2
|
A:GLU506
|
3.1
|
23.2
|
1.0
|
CA
|
A:CA802
|
3.2
|
52.5
|
1.0
|
CG
|
A:ASN448
|
3.6
|
24.9
|
1.0
|
OE1
|
A:GLU452
|
3.7
|
28.2
|
1.0
|
CD
|
A:GLU506
|
3.8
|
23.2
|
1.0
|
CG
|
A:GLU535
|
4.4
|
28.3
|
1.0
|
OE1
|
A:GLU506
|
4.4
|
23.2
|
1.0
|
CG
|
A:GLU506
|
4.4
|
23.2
|
1.0
|
CB
|
A:ASN448
|
4.5
|
24.9
|
1.0
|
ND2
|
A:ASN531
|
4.5
|
26.8
|
1.0
|
ND2
|
A:ASN448
|
4.6
|
24.9
|
1.0
|
CD
|
A:GLU452
|
4.8
|
28.2
|
1.0
|
|
Calcium binding site 4 out
of 4 in 6oy3
Go back to
Calcium Binding Sites List in 6oy3
Calcium binding site 4 out
of 4 in the NHTMEM16 L302A +CA2+ in Nanodiscs
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of NHTMEM16 L302A +CA2+ in Nanodiscs within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca802
b:52.5
occ:1.00
|
OE2
|
A:GLU452
|
2.5
|
28.2
|
1.0
|
OE2
|
A:GLU535
|
2.5
|
28.3
|
1.0
|
OE1
|
A:GLU452
|
2.6
|
28.2
|
1.0
|
CD
|
A:GLU452
|
2.8
|
28.2
|
1.0
|
CA
|
A:CA801
|
3.2
|
42.5
|
1.0
|
OD1
|
A:ASP503
|
3.3
|
24.5
|
1.0
|
CD
|
A:GLU535
|
3.6
|
28.3
|
1.0
|
OD1
|
A:ASN448
|
3.9
|
24.9
|
1.0
|
CG
|
A:GLU506
|
4.0
|
23.2
|
1.0
|
CD
|
A:GLU506
|
4.1
|
23.2
|
1.0
|
CG
|
A:GLU452
|
4.2
|
28.2
|
1.0
|
OE1
|
A:GLU535
|
4.2
|
28.3
|
1.0
|
CB
|
A:GLU506
|
4.2
|
23.2
|
1.0
|
OE2
|
A:GLU506
|
4.4
|
23.2
|
1.0
|
CG
|
A:ASP503
|
4.5
|
24.5
|
1.0
|
OE1
|
A:GLU506
|
4.5
|
23.2
|
1.0
|
CG
|
A:GLU535
|
4.7
|
28.3
|
1.0
|
OD1
|
A:ASP539
|
4.7
|
27.8
|
1.0
|
CG
|
A:ASN448
|
4.9
|
24.9
|
1.0
|
CB
|
A:GLU452
|
5.0
|
28.2
|
1.0
|
|
Reference:
M.Falzone,
B.Lee,
A.Accardi.
NHTMEM16 L302A +CA2+ in Nanodiscs To Be Published.
Page generated: Tue Jul 16 12:38:54 2024
|