Calcium in PDB 6p8p: Structure of P. Aeruginosa ATCC27853 HORMA1
Protein crystallography data
The structure of Structure of P. Aeruginosa ATCC27853 HORMA1, PDB code: 6p8p
was solved by
Q.Ye,
K.D.Corbett,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
97.53 /
1.64
|
Space group
|
P 4
|
Cell size a, b, c (Å), α, β, γ (°)
|
97.525,
97.525,
60.134,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
17.3 /
19.8
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Structure of P. Aeruginosa ATCC27853 HORMA1
(pdb code 6p8p). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the
Structure of P. Aeruginosa ATCC27853 HORMA1, PDB code: 6p8p:
Jump to Calcium binding site number:
1;
2;
3;
4;
Calcium binding site 1 out
of 4 in 6p8p
Go back to
Calcium Binding Sites List in 6p8p
Calcium binding site 1 out
of 4 in the Structure of P. Aeruginosa ATCC27853 HORMA1
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Structure of P. Aeruginosa ATCC27853 HORMA1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca201
b:19.6
occ:1.00
|
O
|
A:HOH397
|
2.4
|
17.8
|
1.0
|
OD2
|
A:ASP53
|
2.4
|
27.0
|
1.0
|
OD1
|
A:ASP53
|
2.4
|
25.4
|
1.0
|
O
|
A:HOH404
|
2.4
|
23.5
|
1.0
|
O
|
A:HOH325
|
2.5
|
26.2
|
1.0
|
CG
|
A:ASP53
|
2.8
|
22.5
|
1.0
|
HE22
|
A:GLN110
|
3.7
|
83.4
|
1.0
|
O
|
A:HOH315
|
4.2
|
30.8
|
1.0
|
CB
|
A:ASP53
|
4.3
|
18.6
|
1.0
|
OE1
|
A:GLN110
|
4.4
|
41.8
|
1.0
|
NE2
|
A:GLN110
|
4.5
|
69.5
|
1.0
|
HG
|
A:SER49
|
4.5
|
24.1
|
1.0
|
O
|
A:HOH328
|
4.5
|
45.4
|
1.0
|
OG
|
A:SER49
|
4.6
|
20.1
|
1.0
|
O
|
A:HOH368
|
4.7
|
35.9
|
1.0
|
O
|
A:SER49
|
4.7
|
15.2
|
1.0
|
HB2
|
A:ASP53
|
4.7
|
22.3
|
1.0
|
HB3
|
A:ASP53
|
4.8
|
22.3
|
1.0
|
HA
|
A:ASP53
|
4.8
|
20.5
|
1.0
|
CD
|
A:GLN110
|
4.9
|
57.3
|
1.0
|
|
Calcium binding site 2 out
of 4 in 6p8p
Go back to
Calcium Binding Sites List in 6p8p
Calcium binding site 2 out
of 4 in the Structure of P. Aeruginosa ATCC27853 HORMA1
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Structure of P. Aeruginosa ATCC27853 HORMA1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca201
b:40.0
occ:1.00
|
O
|
B:ASP84
|
2.2
|
28.6
|
1.0
|
O
|
C:HOH382
|
2.2
|
36.3
|
1.0
|
OD1
|
C:ASP84
|
2.4
|
40.7
|
1.0
|
O
|
B:HOH316
|
2.6
|
43.2
|
1.0
|
O
|
B:HOH306
|
2.9
|
46.7
|
1.0
|
CG
|
C:ASP84
|
3.2
|
35.7
|
1.0
|
HB3
|
C:ASP84
|
3.2
|
35.5
|
1.0
|
HA
|
B:ASP85
|
3.3
|
36.7
|
1.0
|
C
|
B:ASP84
|
3.4
|
30.7
|
1.0
|
HB2
|
C:ASP84
|
3.5
|
35.5
|
1.0
|
CB
|
C:ASP84
|
3.5
|
29.6
|
1.0
|
CA
|
B:ASP85
|
4.1
|
30.6
|
1.0
|
N
|
B:ASP85
|
4.2
|
26.3
|
1.0
|
O
|
B:HOH418
|
4.3
|
60.2
|
1.0
|
O
|
C:HOH315
|
4.3
|
42.0
|
1.0
|
HA
|
B:ASP84
|
4.3
|
39.0
|
1.0
|
OD2
|
C:ASP84
|
4.3
|
31.0
|
1.0
|
HB3
|
B:ASP84
|
4.4
|
41.0
|
1.0
|
CA
|
B:ASP84
|
4.5
|
32.5
|
1.0
|
OD1
|
B:ASP85
|
4.6
|
41.6
|
1.0
|
C
|
B:ASP85
|
4.7
|
29.7
|
1.0
|
H
|
B:ALA86
|
4.8
|
28.3
|
1.0
|
O
|
C:HOH334
|
4.8
|
43.6
|
1.0
|
OD2
|
C:ASP82
|
4.8
|
40.6
|
1.0
|
O
|
B:ALA86
|
4.8
|
22.2
|
1.0
|
O
|
C:HOH308
|
4.9
|
55.7
|
1.0
|
N
|
B:ALA86
|
5.0
|
23.6
|
1.0
|
CB
|
B:ASP84
|
5.0
|
34.1
|
1.0
|
|
Calcium binding site 3 out
of 4 in 6p8p
Go back to
Calcium Binding Sites List in 6p8p
Calcium binding site 3 out
of 4 in the Structure of P. Aeruginosa ATCC27853 HORMA1
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Structure of P. Aeruginosa ATCC27853 HORMA1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca202
b:38.2
occ:1.00
|
O
|
C:ASP84
|
2.2
|
34.6
|
1.0
|
O
|
B:HOH393
|
2.3
|
47.7
|
1.0
|
O
|
C:HOH379
|
2.4
|
47.3
|
1.0
|
O
|
C:HOH366
|
2.4
|
49.1
|
1.0
|
O
|
C:HOH330
|
2.5
|
56.3
|
1.0
|
OD1
|
B:ASP84
|
2.7
|
35.8
|
1.0
|
O
|
B:HOH402
|
2.7
|
48.8
|
1.0
|
HB2
|
B:ASP84
|
3.4
|
41.0
|
1.0
|
C
|
C:ASP84
|
3.5
|
42.3
|
1.0
|
HB3
|
B:ASP84
|
3.6
|
41.0
|
1.0
|
CG
|
B:ASP84
|
3.6
|
33.2
|
1.0
|
HA
|
C:ASP85
|
3.7
|
35.5
|
1.0
|
CB
|
B:ASP84
|
3.7
|
34.1
|
1.0
|
HA
|
C:ASP84
|
4.1
|
38.1
|
1.0
|
O
|
C:HOH411
|
4.3
|
58.4
|
1.0
|
N
|
C:ASP85
|
4.4
|
29.6
|
1.0
|
CA
|
C:ASP84
|
4.4
|
31.8
|
1.0
|
CA
|
C:ASP85
|
4.4
|
29.6
|
1.0
|
OD2
|
B:ASP82
|
4.6
|
43.0
|
1.0
|
H
|
C:ALA86
|
4.6
|
29.8
|
1.0
|
HB3
|
C:ASP84
|
4.7
|
35.5
|
1.0
|
O
|
C:ALA86
|
4.7
|
25.8
|
1.0
|
O
|
B:HOH321
|
4.7
|
41.4
|
1.0
|
OD2
|
B:ASP84
|
4.7
|
30.1
|
1.0
|
C
|
C:ASP85
|
4.9
|
25.1
|
1.0
|
N
|
C:ALA86
|
4.9
|
24.8
|
1.0
|
O
|
C:GLY83
|
4.9
|
31.4
|
1.0
|
O
|
B:HOH328
|
5.0
|
37.4
|
1.0
|
|
Calcium binding site 4 out
of 4 in 6p8p
Go back to
Calcium Binding Sites List in 6p8p
Calcium binding site 4 out
of 4 in the Structure of P. Aeruginosa ATCC27853 HORMA1
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Structure of P. Aeruginosa ATCC27853 HORMA1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca201
b:22.0
occ:1.00
|
OD1
|
D:ASP53
|
2.3
|
27.3
|
1.0
|
O
|
D:HOH362
|
2.4
|
36.4
|
1.0
|
O
|
D:HOH373
|
2.4
|
25.2
|
1.0
|
O
|
D:HOH334
|
2.5
|
32.2
|
1.0
|
OD2
|
D:ASP53
|
2.5
|
26.3
|
1.0
|
CG
|
D:ASP53
|
2.7
|
24.8
|
1.0
|
HE22
|
D:GLN110
|
3.4
|
57.9
|
1.0
|
NE2
|
D:GLN110
|
4.2
|
48.2
|
1.0
|
CB
|
D:ASP53
|
4.3
|
20.8
|
1.0
|
O
|
D:HOH363
|
4.4
|
44.8
|
1.0
|
O
|
D:HOH315
|
4.4
|
26.3
|
1.0
|
OE1
|
D:GLN110
|
4.5
|
29.3
|
1.0
|
HG
|
D:SER49
|
4.6
|
27.5
|
1.0
|
HB3
|
D:ASP53
|
4.7
|
24.9
|
1.0
|
HE21
|
D:GLN110
|
4.7
|
57.9
|
1.0
|
HB2
|
D:ASP53
|
4.7
|
24.9
|
1.0
|
CD
|
D:GLN110
|
4.7
|
50.7
|
1.0
|
O
|
D:SER49
|
4.8
|
19.1
|
1.0
|
O
|
D:HOH382
|
4.8
|
36.3
|
1.0
|
HA
|
D:ASP53
|
4.8
|
26.2
|
1.0
|
OG
|
D:SER49
|
4.8
|
22.9
|
1.0
|
HB3
|
D:ALA52
|
4.9
|
27.6
|
1.0
|
CA
|
D:ASP53
|
5.0
|
21.9
|
1.0
|
|
Reference:
Q.Ye,
R.K.Lau,
I.T.Mathews,
E.A.Birkholz,
J.D.Watrous,
C.S.Azimi,
J.Pogliano,
M.Jain,
K.D.Corbett.
Horma Domain Proteins and A TRIP13-Like Atpase Regulate Bacterial Cgas-Like Enzymes to Mediate Bacteriophage Immunity To Be Published.
Page generated: Tue Jul 16 12:44:50 2024
|