Calcium in PDB 6p8p: Structure of P. Aeruginosa ATCC27853 HORMA1

The structure of Structure of P. Aeruginosa ATCC27853 HORMA1, PDB code: 6p8p was solved by Q.Ye, K.D.Corbett, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	97.53 / 1.64
Space group	P 4
Cell size a, b, c (Å), α, β, γ (°)	97.525, 97.525, 60.134, 90.00, 90.00, 90.00
R / Rfree (%)	17.3 / 19.8

The binding sites of Calcium atom in the Structure of P. Aeruginosa ATCC27853 HORMA1 (pdb code 6p8p). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Structure of P. Aeruginosa ATCC27853 HORMA1, PDB code: 6p8p:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Structure of P. Aeruginosa ATCC27853 HORMA1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of P. Aeruginosa ATCC27853 HORMA1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca201 b:19.6 occ:1.00 O A:HOH397 2.4 17.8 1.0 OD2 A:ASP53 2.4 27.0 1.0 OD1 A:ASP53 2.4 25.4 1.0 O A:HOH404 2.4 23.5 1.0 O A:HOH325 2.5 26.2 1.0 CG A:ASP53 2.8 22.5 1.0 HE22 A:GLN110 3.7 83.4 1.0 O A:HOH315 4.2 30.8 1.0 CB A:ASP53 4.3 18.6 1.0 OE1 A:GLN110 4.4 41.8 1.0 NE2 A:GLN110 4.5 69.5 1.0 HG A:SER49 4.5 24.1 1.0 O A:HOH328 4.5 45.4 1.0 OG A:SER49 4.6 20.1 1.0 O A:HOH368 4.7 35.9 1.0 O A:SER49 4.7 15.2 1.0 HB2 A:ASP53 4.7 22.3 1.0 HB3 A:ASP53 4.8 22.3 1.0 HA A:ASP53 4.8 20.5 1.0 CD A:GLN110 4.9 57.3 1.0

Calcium binding site 2 out of 4 in the Structure of P. Aeruginosa ATCC27853 HORMA1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of P. Aeruginosa ATCC27853 HORMA1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca201 b:40.0 occ:1.00 O B:ASP84 2.2 28.6 1.0 O C:HOH382 2.2 36.3 1.0 OD1 C:ASP84 2.4 40.7 1.0 O B:HOH316 2.6 43.2 1.0 O B:HOH306 2.9 46.7 1.0 CG C:ASP84 3.2 35.7 1.0 HB3 C:ASP84 3.2 35.5 1.0 HA B:ASP85 3.3 36.7 1.0 C B:ASP84 3.4 30.7 1.0 HB2 C:ASP84 3.5 35.5 1.0 CB C:ASP84 3.5 29.6 1.0 CA B:ASP85 4.1 30.6 1.0 N B:ASP85 4.2 26.3 1.0 O B:HOH418 4.3 60.2 1.0 O C:HOH315 4.3 42.0 1.0 HA B:ASP84 4.3 39.0 1.0 OD2 C:ASP84 4.3 31.0 1.0 HB3 B:ASP84 4.4 41.0 1.0 CA B:ASP84 4.5 32.5 1.0 OD1 B:ASP85 4.6 41.6 1.0 C B:ASP85 4.7 29.7 1.0 H B:ALA86 4.8 28.3 1.0 O C:HOH334 4.8 43.6 1.0 OD2 C:ASP82 4.8 40.6 1.0 O B:ALA86 4.8 22.2 1.0 O C:HOH308 4.9 55.7 1.0 N B:ALA86 5.0 23.6 1.0 CB B:ASP84 5.0 34.1 1.0

Calcium binding site 3 out of 4 in the Structure of P. Aeruginosa ATCC27853 HORMA1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of P. Aeruginosa ATCC27853 HORMA1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca202 b:38.2 occ:1.00 O C:ASP84 2.2 34.6 1.0 O B:HOH393 2.3 47.7 1.0 O C:HOH379 2.4 47.3 1.0 O C:HOH366 2.4 49.1 1.0 O C:HOH330 2.5 56.3 1.0 OD1 B:ASP84 2.7 35.8 1.0 O B:HOH402 2.7 48.8 1.0 HB2 B:ASP84 3.4 41.0 1.0 C C:ASP84 3.5 42.3 1.0 HB3 B:ASP84 3.6 41.0 1.0 CG B:ASP84 3.6 33.2 1.0 HA C:ASP85 3.7 35.5 1.0 CB B:ASP84 3.7 34.1 1.0 HA C:ASP84 4.1 38.1 1.0 O C:HOH411 4.3 58.4 1.0 N C:ASP85 4.4 29.6 1.0 CA C:ASP84 4.4 31.8 1.0 CA C:ASP85 4.4 29.6 1.0 OD2 B:ASP82 4.6 43.0 1.0 H C:ALA86 4.6 29.8 1.0 HB3 C:ASP84 4.7 35.5 1.0 O C:ALA86 4.7 25.8 1.0 O B:HOH321 4.7 41.4 1.0 OD2 B:ASP84 4.7 30.1 1.0 C C:ASP85 4.9 25.1 1.0 N C:ALA86 4.9 24.8 1.0 O C:GLY83 4.9 31.4 1.0 O B:HOH328 5.0 37.4 1.0

Calcium binding site 4 out of 4 in the Structure of P. Aeruginosa ATCC27853 HORMA1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of P. Aeruginosa ATCC27853 HORMA1 within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca201 b:22.0 occ:1.00 OD1 D:ASP53 2.3 27.3 1.0 O D:HOH362 2.4 36.4 1.0 O D:HOH373 2.4 25.2 1.0 O D:HOH334 2.5 32.2 1.0 OD2 D:ASP53 2.5 26.3 1.0 CG D:ASP53 2.7 24.8 1.0 HE22 D:GLN110 3.4 57.9 1.0 NE2 D:GLN110 4.2 48.2 1.0 CB D:ASP53 4.3 20.8 1.0 O D:HOH363 4.4 44.8 1.0 O D:HOH315 4.4 26.3 1.0 OE1 D:GLN110 4.5 29.3 1.0 HG D:SER49 4.6 27.5 1.0 HB3 D:ASP53 4.7 24.9 1.0 HE21 D:GLN110 4.7 57.9 1.0 HB2 D:ASP53 4.7 24.9 1.0 CD D:GLN110 4.7 50.7 1.0 O D:SER49 4.8 19.1 1.0 O D:HOH382 4.8 36.3 1.0 HA D:ASP53 4.8 26.2 1.0 OG D:SER49 4.8 22.9 1.0 HB3 D:ALA52 4.9 27.6 1.0 CA D:ASP53 5.0 21.9 1.0

Q.Ye, R.K.Lau, I.T.Mathews, E.A.Birkholz, J.D.Watrous, C.S.Azimi, J.Pogliano, M.Jain, K.D.Corbett. Horma Domain Proteins and A TRIP13-Like Atpase Regulate Bacterial Cgas-Like Enzymes to Mediate Bacteriophage Immunity To Be Published.