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Calcium in PDB 6pfy: Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I at Synchrotron to 2.9 A
Enzymatic activity of Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I at Synchrotron to 2.9 A
All present enzymatic activity of Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I at Synchrotron to 2.9 A:
1.97.1.12;
1.97.1.12;
Protein crystallography data
The structure of Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I at Synchrotron to 2.9 A, PDB code: 6pfy
was solved by
R.Fromme,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 48.87 / 2.90 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 278.496, 165.126, 283.427, 90.00, 119.42, 90.00 |
| R / Rfree (%) | 30.3 / 34.3 |
Other elements in 6pfy:
The structure of Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I at Synchrotron to 2.9 A also contains other interesting chemical elements:
| Magnesium | (Mg) | 285 atoms |
| Iron | (Fe) | 36 atoms |
Calcium Binding Sites:
The binding sites of Calcium atom in the Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I at Synchrotron to 2.9 A
(pdb code 6pfy). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I at Synchrotron to 2.9 A, PDB code: 6pfy:
Jump to Calcium binding site number: 1; 2; 3;
In total 3 binding sites of Calcium where determined in the Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I at Synchrotron to 2.9 A, PDB code: 6pfy:
Jump to Calcium binding site number: 1; 2; 3;
Calcium binding site 1 out of 3 in 6pfy
Go back to
Calcium Binding Sites List in 6pfy
Calcium binding site 1 out
of 3 in the Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I at Synchrotron to 2.9 A
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I at Synchrotron to 2.9 A within 5.0Å range:
|
Calcium binding site 2 out of 3 in 6pfy
Go back to
Calcium Binding Sites List in 6pfy
Calcium binding site 2 out
of 3 in the Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I at Synchrotron to 2.9 A
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I at Synchrotron to 2.9 A within 5.0Å range:
|
Calcium binding site 3 out of 3 in 6pfy
Go back to
Calcium Binding Sites List in 6pfy
Calcium binding site 3 out
of 3 in the Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I at Synchrotron to 2.9 A
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I at Synchrotron to 2.9 A within 5.0Å range:
|
Reference:
C.Gisriel,
J.Coe,
R.Letrun,
O.M.Yefanov,
C.Luna-Chavez,
N.E.Stander,
S.Lisova,
V.Mariani,
M.Kuhn,
S.Aplin,
T.D.Grant,
K.Dorner,
T.Sato,
A.Echelmeier,
J.Cruz Villarreal,
M.S.Hunter,
M.O.Wiedorn,
J.Knoska,
V.Mazalova,
S.Roy-Chowdhury,
J.H.Yang,
A.Jones,
R.Bean,
J.Bielecki,
Y.Kim,
G.Mills,
B.Weinhausen,
J.D.Meza,
N.Al-Qudami,
S.Bajt,
G.Brehm,
S.Botha,
D.Boukhelef,
S.Brockhauser,
B.D.Bruce,
M.A.Coleman,
C.Danilevski,
E.Discianno,
Z.Dobson,
H.Fangohr,
J.M.Martin-Garcia,
Y.Gevorkov,
S.Hauf,
A.Hosseinizadeh,
F.Januschek,
G.K.Ketawala,
C.Kupitz,
L.Maia,
M.Manetti,
M.Messerschmidt,
T.Michelat,
J.Mondal,
A.Ourmazd,
G.Previtali,
I.Sarrou,
S.Schon,
P.Schwander,
M.L.Shelby,
A.Silenzi,
J.Sztuk-Dambietz,
J.Szuba,
M.Turcato,
T.A.White,
K.Wrona,
C.Xu,
M.H.Abdellatif,
J.D.Zook,
J.C.H.Spence,
H.N.Chapman,
A.Barty,
R.A.Kirian,
M.Frank,
A.Ros,
M.Schmidt,
R.Fromme,
A.P.Mancuso,
P.Fromme,
N.A.Zatsepin.
Membrane Protein Megahertz Crystallography at the European Xfel. Nat Commun V. 10 5021 2019.
ISSN: ESSN 2041-1723
PubMed: 31685819
DOI: 10.1038/S41467-019-12955-3
Page generated: Tue Jul 16 12:51:35 2024
ISSN: ESSN 2041-1723
PubMed: 31685819
DOI: 10.1038/S41467-019-12955-3
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