Calcium in PDB 6pgw: Crystal Structure of Zebrafish Protocadherin-19 EC3-6
Protein crystallography data
The structure of Crystal Structure of Zebrafish Protocadherin-19 EC3-6, PDB code: 6pgw
was solved by
S.R.Cooper,
J.D.Hudson,
M.Sotomayor,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
50.00 /
3.00
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
69.92,
58.896,
70.956,
90,
117.97,
90
|
R / Rfree (%)
|
21.5 /
29.8
|
Other elements in 6pgw:
The structure of Crystal Structure of Zebrafish Protocadherin-19 EC3-6 also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Crystal Structure of Zebrafish Protocadherin-19 EC3-6
(pdb code 6pgw). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 9 binding sites of Calcium where determined in the
Crystal Structure of Zebrafish Protocadherin-19 EC3-6, PDB code: 6pgw:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Calcium binding site 1 out
of 9 in 6pgw
Go back to
Calcium Binding Sites List in 6pgw
Calcium binding site 1 out
of 9 in the Crystal Structure of Zebrafish Protocadherin-19 EC3-6
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of Zebrafish Protocadherin-19 EC3-6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca701
b:41.9
occ:1.00
|
OE2
|
A:GLU226
|
2.3
|
41.3
|
1.0
|
OD1
|
A:ASP282
|
2.3
|
45.7
|
1.0
|
O
|
A:HOH810
|
2.3
|
43.7
|
1.0
|
OE2
|
A:GLU284
|
2.3
|
41.8
|
1.0
|
O
|
A:HOH809
|
2.3
|
38.7
|
1.0
|
OD2
|
A:ASP318
|
2.3
|
40.3
|
1.0
|
CD
|
A:GLU226
|
3.2
|
40.1
|
1.0
|
CG
|
A:ASP318
|
3.2
|
39.0
|
1.0
|
OD1
|
A:ASP318
|
3.3
|
39.1
|
1.0
|
CG
|
A:ASP282
|
3.4
|
46.5
|
1.0
|
CD
|
A:GLU284
|
3.6
|
42.4
|
1.0
|
CG
|
A:GLU226
|
3.9
|
38.6
|
1.0
|
OE1
|
A:GLU226
|
3.9
|
39.8
|
1.0
|
CA
|
A:CA702
|
4.0
|
42.0
|
1.0
|
ND2
|
A:ASN227
|
4.1
|
37.7
|
1.0
|
OD1
|
A:ASN227
|
4.1
|
38.9
|
1.0
|
ND2
|
A:ASN319
|
4.1
|
41.4
|
1.0
|
OE1
|
A:GLU284
|
4.2
|
42.0
|
1.0
|
CA
|
A:ASP282
|
4.2
|
43.8
|
1.0
|
OD2
|
A:ASP282
|
4.3
|
48.4
|
1.0
|
CB
|
A:ASP282
|
4.3
|
44.4
|
1.0
|
N
|
A:HIS283
|
4.4
|
42.8
|
1.0
|
CG
|
A:ASN227
|
4.5
|
36.8
|
1.0
|
CB
|
A:ASP318
|
4.6
|
37.8
|
1.0
|
C
|
A:ASP282
|
4.6
|
42.4
|
1.0
|
CG
|
A:GLU284
|
4.7
|
43.3
|
1.0
|
N
|
A:GLU284
|
4.7
|
44.7
|
1.0
|
CB
|
A:GLU284
|
4.9
|
43.4
|
1.0
|
|
Calcium binding site 2 out
of 9 in 6pgw
Go back to
Calcium Binding Sites List in 6pgw
Calcium binding site 2 out
of 9 in the Crystal Structure of Zebrafish Protocadherin-19 EC3-6
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of Zebrafish Protocadherin-19 EC3-6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca702
b:42.0
occ:1.00
|
OD1
|
A:ASP354
|
2.3
|
38.9
|
1.0
|
OD1
|
A:ASP315
|
2.3
|
41.5
|
1.0
|
O
|
A:ILE316
|
2.3
|
40.0
|
1.0
|
OE1
|
A:GLU226
|
2.4
|
39.8
|
1.0
|
OE1
|
A:GLU284
|
2.4
|
42.0
|
1.0
|
OD1
|
A:ASP318
|
2.4
|
39.1
|
1.0
|
CD
|
A:GLU284
|
3.1
|
42.4
|
1.0
|
CD
|
A:GLU226
|
3.2
|
40.1
|
1.0
|
OE2
|
A:GLU284
|
3.2
|
41.8
|
1.0
|
OE2
|
A:GLU226
|
3.3
|
41.3
|
1.0
|
CG
|
A:ASP354
|
3.3
|
41.7
|
1.0
|
C
|
A:ILE316
|
3.5
|
39.5
|
1.0
|
CG
|
A:ASP318
|
3.5
|
39.0
|
1.0
|
CG
|
A:ASP315
|
3.6
|
40.0
|
1.0
|
N
|
A:ILE316
|
3.7
|
39.4
|
1.0
|
CB
|
A:ASP354
|
4.0
|
42.4
|
1.0
|
ND2
|
A:ASN319
|
4.0
|
41.4
|
1.0
|
CA
|
A:CA701
|
4.0
|
41.9
|
1.0
|
OD2
|
A:ASP318
|
4.1
|
40.3
|
1.0
|
CA
|
A:ILE316
|
4.2
|
39.8
|
1.0
|
N
|
A:ASP318
|
4.2
|
36.4
|
1.0
|
OD2
|
A:ASP354
|
4.3
|
41.5
|
1.0
|
OD2
|
A:ASP315
|
4.3
|
40.6
|
1.0
|
CB
|
A:HIS283
|
4.4
|
44.3
|
1.0
|
CA
|
A:ASP354
|
4.4
|
43.6
|
1.0
|
CA
|
A:ASP315
|
4.5
|
39.1
|
1.0
|
C
|
A:ASP315
|
4.5
|
38.9
|
1.0
|
CG
|
A:GLU226
|
4.6
|
38.6
|
1.0
|
CG
|
A:GLU284
|
4.6
|
43.3
|
1.0
|
CB
|
A:ASP315
|
4.6
|
39.1
|
1.0
|
N
|
A:ASN317
|
4.6
|
34.2
|
1.0
|
CB
|
A:ASP318
|
4.7
|
37.8
|
1.0
|
CG1
|
A:ILE316
|
4.8
|
40.0
|
1.0
|
CA
|
A:ASN317
|
4.9
|
33.9
|
1.0
|
CA
|
A:ASP318
|
5.0
|
37.4
|
1.0
|
|
Calcium binding site 3 out
of 9 in 6pgw
Go back to
Calcium Binding Sites List in 6pgw
Calcium binding site 3 out
of 9 in the Crystal Structure of Zebrafish Protocadherin-19 EC3-6
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of Zebrafish Protocadherin-19 EC3-6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca703
b:41.6
occ:1.00
|
O
|
A:ASN319
|
2.3
|
40.2
|
1.0
|
OD2
|
A:ASP352
|
2.3
|
39.9
|
1.0
|
OD1
|
A:ASN317
|
2.3
|
36.5
|
1.0
|
OD2
|
A:ASP354
|
2.3
|
41.5
|
1.0
|
OD1
|
A:ASP352
|
2.3
|
40.9
|
1.0
|
O
|
A:ASN358
|
2.3
|
45.4
|
1.0
|
OD2
|
A:ASP404
|
2.4
|
41.0
|
1.0
|
CG
|
A:ASP352
|
2.6
|
41.9
|
1.0
|
CG
|
A:ASP404
|
3.4
|
41.0
|
1.0
|
C
|
A:ASN358
|
3.4
|
44.1
|
1.0
|
CG
|
A:ASP354
|
3.5
|
41.7
|
1.0
|
C
|
A:ASN319
|
3.5
|
39.4
|
1.0
|
CG
|
A:ASN317
|
3.5
|
33.7
|
1.0
|
CB
|
A:ASP404
|
3.8
|
42.5
|
1.0
|
CB
|
A:ASP354
|
3.9
|
42.4
|
1.0
|
CA
|
A:ASN358
|
4.1
|
41.2
|
1.0
|
CB
|
A:ASP352
|
4.1
|
44.3
|
1.0
|
CB
|
A:ASN358
|
4.2
|
39.5
|
1.0
|
ND2
|
A:ASN317
|
4.3
|
31.1
|
1.0
|
N
|
A:ALA320
|
4.4
|
40.2
|
1.0
|
CA
|
A:ALA320
|
4.4
|
40.2
|
1.0
|
OD1
|
A:ASP404
|
4.4
|
39.5
|
1.0
|
CA
|
A:ASN319
|
4.4
|
39.3
|
1.0
|
N
|
A:ASN319
|
4.4
|
39.2
|
1.0
|
CA
|
A:ASN317
|
4.5
|
33.9
|
1.0
|
N
|
A:GLY359
|
4.5
|
46.9
|
1.0
|
OD1
|
A:ASP354
|
4.6
|
38.9
|
1.0
|
CB
|
A:ASN317
|
4.6
|
33.6
|
1.0
|
CB
|
A:ASN319
|
4.7
|
40.1
|
1.0
|
C
|
A:ASN317
|
4.8
|
34.6
|
1.0
|
N
|
A:ASP354
|
4.8
|
45.4
|
1.0
|
CA
|
A:GLY359
|
4.9
|
49.2
|
1.0
|
C
|
A:ALA320
|
5.0
|
39.9
|
1.0
|
CA
|
A:ASP354
|
5.0
|
43.6
|
1.0
|
|
Calcium binding site 4 out
of 9 in 6pgw
Go back to
Calcium Binding Sites List in 6pgw
Calcium binding site 4 out
of 9 in the Crystal Structure of Zebrafish Protocadherin-19 EC3-6
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of Zebrafish Protocadherin-19 EC3-6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca704
b:83.2
occ:1.00
|
OE2
|
A:GLU337
|
2.3
|
78.2
|
1.0
|
OD2
|
A:ASP425
|
2.3
|
81.1
|
1.0
|
OE2
|
A:GLU391
|
2.3
|
81.7
|
1.0
|
O
|
A:HOH804
|
2.3
|
75.0
|
1.0
|
O
|
A:HOH801
|
2.3
|
78.1
|
1.0
|
OD1
|
A:ASP389
|
2.3
|
81.9
|
1.0
|
CG
|
A:ASP425
|
3.1
|
80.2
|
1.0
|
OD1
|
A:ASP425
|
3.3
|
83.2
|
1.0
|
CD
|
A:GLU337
|
3.3
|
79.9
|
1.0
|
CD
|
A:GLU391
|
3.5
|
80.5
|
1.0
|
CG
|
A:ASP389
|
3.5
|
83.2
|
1.0
|
OE1
|
A:GLU337
|
3.7
|
81.7
|
1.0
|
CA
|
A:CA705
|
3.9
|
81.1
|
1.0
|
OE1
|
A:GLU391
|
4.2
|
80.0
|
1.0
|
N
|
A:ARG390
|
4.2
|
89.3
|
1.0
|
OD2
|
A:ASP389
|
4.2
|
85.5
|
1.0
|
CA
|
A:ASP389
|
4.3
|
85.8
|
1.0
|
CB
|
A:ASP425
|
4.4
|
81.2
|
1.0
|
CG
|
A:GLU337
|
4.4
|
81.1
|
1.0
|
CB
|
A:ASP389
|
4.5
|
83.7
|
1.0
|
CG
|
A:GLU391
|
4.5
|
81.3
|
1.0
|
N
|
A:GLU391
|
4.5
|
81.5
|
1.0
|
ND2
|
A:ASN338
|
4.5
|
101.3
|
1.0
|
OD1
|
A:ASN426
|
4.5
|
90.9
|
1.0
|
CB
|
A:GLU337
|
4.6
|
82.0
|
1.0
|
CB
|
A:GLU391
|
4.6
|
80.9
|
1.0
|
ND2
|
A:ASN426
|
4.6
|
90.6
|
1.0
|
C
|
A:ASP389
|
4.7
|
86.4
|
1.0
|
CG
|
A:ASN426
|
4.9
|
89.5
|
1.0
|
|
Calcium binding site 5 out
of 9 in 6pgw
Go back to
Calcium Binding Sites List in 6pgw
Calcium binding site 5 out
of 9 in the Crystal Structure of Zebrafish Protocadherin-19 EC3-6
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of Zebrafish Protocadherin-19 EC3-6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca705
b:81.1
occ:1.00
|
OE1
|
A:GLU337
|
2.3
|
81.7
|
1.0
|
OD1
|
A:ASP458
|
2.3
|
92.8
|
1.0
|
OE1
|
A:GLU391
|
2.3
|
80.0
|
1.0
|
O
|
A:GLU423
|
2.3
|
78.5
|
1.0
|
OD1
|
A:ASP425
|
2.4
|
83.2
|
1.0
|
OD1
|
A:ASP422
|
2.4
|
82.2
|
1.0
|
CD
|
A:GLU391
|
3.1
|
80.5
|
1.0
|
CD
|
A:GLU337
|
3.1
|
79.9
|
1.0
|
OE2
|
A:GLU391
|
3.1
|
81.7
|
1.0
|
OE2
|
A:GLU337
|
3.3
|
78.2
|
1.0
|
CG
|
A:ASP458
|
3.5
|
90.9
|
1.0
|
CG
|
A:ASP422
|
3.5
|
81.1
|
1.0
|
CG
|
A:ASP425
|
3.5
|
80.2
|
1.0
|
C
|
A:GLU423
|
3.5
|
80.9
|
1.0
|
N
|
A:GLU423
|
3.8
|
79.6
|
1.0
|
CA
|
A:CA704
|
3.9
|
83.2
|
1.0
|
OD2
|
A:ASP425
|
4.0
|
81.1
|
1.0
|
OD2
|
A:ASP422
|
4.1
|
75.9
|
1.0
|
N
|
A:ASP425
|
4.2
|
81.5
|
1.0
|
CB
|
A:ASP458
|
4.2
|
90.0
|
1.0
|
CA
|
A:GLU423
|
4.2
|
81.5
|
1.0
|
CA
|
A:ASP458
|
4.3
|
88.6
|
1.0
|
OD2
|
A:ASP458
|
4.4
|
89.2
|
1.0
|
CG
|
A:GLU337
|
4.5
|
81.1
|
1.0
|
CG
|
A:GLU391
|
4.6
|
81.3
|
1.0
|
N
|
A:ASN424
|
4.6
|
86.6
|
1.0
|
CB
|
A:ARG390
|
4.7
|
94.7
|
1.0
|
CB
|
A:ASP422
|
4.7
|
81.2
|
1.0
|
CB
|
A:GLU423
|
4.8
|
84.5
|
1.0
|
CB
|
A:ASP425
|
4.8
|
81.2
|
1.0
|
CA
|
A:ASP422
|
4.8
|
78.2
|
1.0
|
C
|
A:ASP422
|
4.8
|
77.1
|
1.0
|
CA
|
A:ASN424
|
4.9
|
83.8
|
1.0
|
CA
|
A:ASP425
|
4.9
|
81.3
|
1.0
|
N
|
A:ASP458
|
4.9
|
87.2
|
1.0
|
|
Calcium binding site 6 out
of 9 in 6pgw
Go back to
Calcium Binding Sites List in 6pgw
Calcium binding site 6 out
of 9 in the Crystal Structure of Zebrafish Protocadherin-19 EC3-6
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of Zebrafish Protocadherin-19 EC3-6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca706
b:81.9
occ:1.00
|
OD2
|
A:ASP513
|
2.3
|
92.4
|
1.0
|
O
|
A:ASN426
|
2.3
|
85.4
|
1.0
|
OD2
|
A:ASP456
|
2.3
|
78.5
|
1.0
|
OD2
|
A:ASP458
|
2.3
|
89.2
|
1.0
|
O
|
A:ASN462
|
2.3
|
76.0
|
1.0
|
OD1
|
A:ASN424
|
2.3
|
87.0
|
1.0
|
OD1
|
A:ASP456
|
3.0
|
77.7
|
1.0
|
CG
|
A:ASP456
|
3.0
|
77.3
|
1.0
|
C
|
A:ASN462
|
3.4
|
77.2
|
1.0
|
CG
|
A:ASP458
|
3.4
|
90.9
|
1.0
|
CG
|
A:ASP513
|
3.5
|
97.1
|
1.0
|
CG
|
A:ASN424
|
3.5
|
85.0
|
1.0
|
C
|
A:ASN426
|
3.5
|
86.1
|
1.0
|
CB
|
A:ASP458
|
3.9
|
90.0
|
1.0
|
CA
|
A:PRO427
|
4.0
|
84.5
|
1.0
|
CB
|
A:ASP513
|
4.2
|
98.7
|
1.0
|
ND2
|
A:ASN424
|
4.2
|
83.7
|
1.0
|
N
|
A:PRO427
|
4.2
|
87.3
|
1.0
|
CA
|
A:ASN462
|
4.3
|
81.5
|
1.0
|
N
|
A:GLY463
|
4.3
|
77.0
|
1.0
|
CB
|
A:ASN462
|
4.4
|
81.6
|
1.0
|
CB
|
A:ASP456
|
4.4
|
75.9
|
1.0
|
OD1
|
A:ASP513
|
4.4
|
96.3
|
1.0
|
CA
|
A:GLY463
|
4.5
|
74.2
|
1.0
|
N
|
A:ASN426
|
4.5
|
85.8
|
1.0
|
OD1
|
A:ASP458
|
4.5
|
92.8
|
1.0
|
CA
|
A:ASN424
|
4.5
|
83.8
|
1.0
|
C
|
A:PRO427
|
4.5
|
81.2
|
1.0
|
CA
|
A:ASN426
|
4.6
|
86.3
|
1.0
|
CB
|
A:ASN424
|
4.6
|
85.4
|
1.0
|
C
|
A:ASN424
|
4.8
|
80.8
|
1.0
|
CD1
|
A:LEU519
|
4.9
|
93.0
|
1.0
|
CB
|
A:ASN426
|
5.0
|
87.5
|
1.0
|
|
Calcium binding site 7 out
of 9 in 6pgw
Go back to
Calcium Binding Sites List in 6pgw
Calcium binding site 7 out
of 9 in the Crystal Structure of Zebrafish Protocadherin-19 EC3-6
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of Zebrafish Protocadherin-19 EC3-6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca707
b:56.2
occ:1.00
|
OE2
|
A:GLU441
|
2.3
|
52.2
|
1.0
|
O
|
A:HOH803
|
2.3
|
49.4
|
1.0
|
OE2
|
A:GLU500
|
2.3
|
54.8
|
1.0
|
OD2
|
A:ASP534
|
2.3
|
49.1
|
1.0
|
O
|
A:HOH812
|
2.3
|
51.7
|
1.0
|
OD1
|
A:ASN498
|
2.3
|
55.0
|
1.0
|
CG
|
A:ASP534
|
3.1
|
48.3
|
1.0
|
OD1
|
A:ASP534
|
3.2
|
50.5
|
1.0
|
CG
|
A:ASN498
|
3.2
|
53.8
|
1.0
|
CD
|
A:GLU441
|
3.3
|
54.1
|
1.0
|
CD
|
A:GLU500
|
3.4
|
52.1
|
1.0
|
ND2
|
A:ASN498
|
3.8
|
53.8
|
1.0
|
ND2
|
A:ASN535
|
3.8
|
44.5
|
1.0
|
OE1
|
A:GLU441
|
4.0
|
53.0
|
1.0
|
CG
|
A:GLU500
|
4.1
|
51.9
|
1.0
|
CG
|
A:GLU441
|
4.2
|
55.1
|
1.0
|
CA
|
A:CA708
|
4.2
|
52.3
|
1.0
|
CB
|
A:GLU500
|
4.3
|
51.5
|
1.0
|
CB
|
A:ASN498
|
4.3
|
52.7
|
1.0
|
OE1
|
A:GLU500
|
4.3
|
51.1
|
1.0
|
OD1
|
A:ASN442
|
4.4
|
60.1
|
1.0
|
CB
|
A:ASP534
|
4.5
|
48.3
|
1.0
|
CA
|
A:ASN498
|
4.6
|
52.2
|
1.0
|
N
|
A:GLU500
|
4.6
|
50.3
|
1.0
|
CG
|
A:ASN535
|
4.7
|
43.1
|
1.0
|
N
|
A:HIS499
|
4.8
|
53.3
|
1.0
|
O
|
A:ASP534
|
4.8
|
46.9
|
1.0
|
OD1
|
A:ASN535
|
4.9
|
40.8
|
1.0
|
C
|
A:ASN498
|
4.9
|
52.7
|
1.0
|
ND2
|
A:ASN442
|
5.0
|
61.1
|
1.0
|
|
Calcium binding site 8 out
of 9 in 6pgw
Go back to
Calcium Binding Sites List in 6pgw
Calcium binding site 8 out
of 9 in the Crystal Structure of Zebrafish Protocadherin-19 EC3-6
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of Zebrafish Protocadherin-19 EC3-6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca708
b:52.3
occ:1.00
|
OE1
|
A:GLU441
|
2.3
|
53.0
|
1.0
|
OE1
|
A:GLU500
|
2.3
|
51.1
|
1.0
|
OD1
|
A:ASP531
|
2.3
|
56.3
|
1.0
|
O
|
A:VAL532
|
2.4
|
56.1
|
1.0
|
OD1
|
A:ASP572
|
2.4
|
49.6
|
1.0
|
OD1
|
A:ASP534
|
2.4
|
50.5
|
1.0
|
OE2
|
A:GLU500
|
2.9
|
54.8
|
1.0
|
CD
|
A:GLU500
|
3.0
|
52.1
|
1.0
|
CD
|
A:GLU441
|
3.2
|
54.1
|
1.0
|
CG
|
A:ASP572
|
3.3
|
53.0
|
1.0
|
OE2
|
A:GLU441
|
3.4
|
52.2
|
1.0
|
CG
|
A:ASP534
|
3.5
|
48.3
|
1.0
|
C
|
A:VAL532
|
3.5
|
56.2
|
1.0
|
CG
|
A:ASP531
|
3.6
|
59.0
|
1.0
|
N
|
A:VAL532
|
3.7
|
56.6
|
1.0
|
CB
|
A:ASP572
|
3.9
|
54.8
|
1.0
|
OD2
|
A:ASP534
|
4.1
|
49.1
|
1.0
|
ND2
|
A:ASN535
|
4.1
|
44.5
|
1.0
|
CA
|
A:ASP572
|
4.2
|
57.1
|
1.0
|
CA
|
A:CA707
|
4.2
|
56.2
|
1.0
|
CA
|
A:VAL532
|
4.2
|
56.5
|
1.0
|
N
|
A:ASP534
|
4.3
|
48.2
|
1.0
|
OD2
|
A:ASP572
|
4.3
|
50.2
|
1.0
|
CA
|
A:ASP531
|
4.4
|
57.9
|
1.0
|
CB
|
A:HIS499
|
4.4
|
54.9
|
1.0
|
CG
|
A:GLU500
|
4.4
|
51.9
|
1.0
|
OD2
|
A:ASP531
|
4.4
|
60.4
|
1.0
|
C
|
A:ASP531
|
4.5
|
58.4
|
1.0
|
CB
|
A:ASP531
|
4.6
|
59.7
|
1.0
|
N
|
A:ASN533
|
4.6
|
51.6
|
1.0
|
CG
|
A:GLU441
|
4.6
|
55.1
|
1.0
|
CB
|
A:ASP534
|
4.7
|
48.3
|
1.0
|
CG2
|
A:VAL532
|
4.7
|
56.8
|
1.0
|
CD2
|
A:HIS499
|
4.7
|
59.6
|
1.0
|
CG
|
A:HIS499
|
4.8
|
57.2
|
1.0
|
CA
|
A:ASN533
|
4.9
|
50.9
|
1.0
|
N
|
A:ASP572
|
5.0
|
56.2
|
1.0
|
CA
|
A:ASP534
|
5.0
|
47.0
|
1.0
|
|
Calcium binding site 9 out
of 9 in 6pgw
Go back to
Calcium Binding Sites List in 6pgw
Calcium binding site 9 out
of 9 in the Crystal Structure of Zebrafish Protocadherin-19 EC3-6
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Crystal Structure of Zebrafish Protocadherin-19 EC3-6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca709
b:45.1
occ:1.00
|
OD1
|
A:ASN533
|
2.3
|
49.0
|
1.0
|
OD2
|
A:ASP570
|
2.3
|
42.2
|
1.0
|
OD2
|
A:ASP572
|
2.3
|
50.2
|
1.0
|
OD1
|
A:ASP570
|
2.4
|
42.7
|
1.0
|
OD2
|
A:ASP622
|
2.4
|
48.0
|
1.0
|
O
|
A:ASN535
|
2.4
|
46.2
|
1.0
|
O
|
A:ASN576
|
2.4
|
50.9
|
1.0
|
CG
|
A:ASP570
|
2.7
|
42.3
|
1.0
|
CG
|
A:ASP572
|
3.4
|
53.0
|
1.0
|
CG
|
A:ASN533
|
3.5
|
51.3
|
1.0
|
C
|
A:ASN576
|
3.6
|
51.2
|
1.0
|
CG
|
A:ASP622
|
3.6
|
49.0
|
1.0
|
C
|
A:ASN535
|
3.7
|
46.1
|
1.0
|
CB
|
A:ASP572
|
3.7
|
54.8
|
1.0
|
CB
|
A:ASP570
|
4.2
|
44.1
|
1.0
|
CB
|
A:ASP622
|
4.3
|
49.5
|
1.0
|
ND2
|
A:ASN533
|
4.3
|
50.7
|
1.0
|
CB
|
A:ASN535
|
4.4
|
43.6
|
1.0
|
CA
|
A:ASN535
|
4.4
|
44.7
|
1.0
|
N
|
A:ASN535
|
4.4
|
45.0
|
1.0
|
CA
|
A:ASN576
|
4.4
|
54.4
|
1.0
|
N
|
A:GLY577
|
4.5
|
50.0
|
1.0
|
OD1
|
A:ASP572
|
4.5
|
49.6
|
1.0
|
CB
|
A:ASN576
|
4.5
|
55.9
|
1.0
|
CA
|
A:GLY577
|
4.6
|
50.4
|
1.0
|
CA
|
A:ASN533
|
4.6
|
50.9
|
1.0
|
OD1
|
A:ASP622
|
4.6
|
48.2
|
1.0
|
CB
|
A:ASN533
|
4.6
|
51.5
|
1.0
|
N
|
A:ASP572
|
4.6
|
56.2
|
1.0
|
N
|
A:THR536
|
4.7
|
49.1
|
1.0
|
CA
|
A:ASP572
|
4.8
|
57.1
|
1.0
|
C
|
A:ASN533
|
4.8
|
50.2
|
1.0
|
CD
|
A:PRO537
|
4.9
|
50.8
|
1.0
|
|
Reference:
S.R.Cooper,
J.D.Hudson,
M.Sotomayor.
Crystal Structure of Zebrafish Protocadherin-19 EC3-6 To Be Published.
Page generated: Tue Jul 16 12:53:06 2024
|