Atomistry » Calcium » PDB 6p8w-6ptk » 6pii
Atomistry »
  Calcium »
    PDB 6p8w-6ptk »
      6pii »

Calcium in PDB 6pii: The Evolving Story of Atzt, A Periplasmic Binding Protein

Protein crystallography data

The structure of The Evolving Story of Atzt, A Periplasmic Binding Protein, PDB code: 6pii was solved by T.S.Peat, J.Newman, C.Scott, L.Esquirol, M.Dennis, T.Nebl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.40 / 1.87
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 98.920, 63.050, 120.436, 90.00, 93.49, 90.00
R / Rfree (%) 15.5 / 18.3

Other elements in 6pii:

The structure of The Evolving Story of Atzt, A Periplasmic Binding Protein also contains other interesting chemical elements:

Mercury (Hg) 4 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the The Evolving Story of Atzt, A Periplasmic Binding Protein (pdb code 6pii). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the The Evolving Story of Atzt, A Periplasmic Binding Protein, PDB code: 6pii:

Calcium binding site 1 out of 1 in 6pii

Go back to Calcium Binding Sites List in 6pii
Calcium binding site 1 out of 1 in the The Evolving Story of Atzt, A Periplasmic Binding Protein


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Evolving Story of Atzt, A Periplasmic Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca403

b:55.6
occ:1.00
O C:HOH543 2.9 48.8 1.0
ND2 C:ASN220 2.9 29.9 1.0
OD2 C:ASP239 2.9 27.9 1.0
O C:THR219 3.0 33.0 1.0
O C:HOH520 3.0 29.4 1.0
O C:ASN218 3.1 28.8 1.0
SG C:CYS238 3.1 36.4 1.0
N2 C:GUN401 3.2 35.2 1.0
C C:THR219 3.7 30.5 1.0
C C:ASN218 3.7 30.5 1.0
N3 C:GUN401 4.0 38.5 1.0
CB C:TYR45 4.1 30.4 1.0
C2 C:GUN401 4.1 38.7 1.0
CG C:ASP239 4.1 37.5 1.0
CD1 C:TYR45 4.1 30.9 1.0
ND2 C:ASN218 4.1 30.2 1.0
CG C:ASN220 4.1 31.6 1.0
CA C:ASN220 4.2 27.7 1.0
N C:ASN220 4.3 28.7 1.0
CA C:ASN218 4.4 25.8 1.0
CB C:CYS238 4.4 34.2 1.0
N C:THR219 4.4 25.1 1.0
CG C:TYR45 4.4 30.5 1.0
CA C:THR219 4.5 27.9 1.0
HG C:EMC402 4.5 29.0 0.8
CB C:ASN220 4.6 29.2 1.0
OD1 C:ASP239 4.6 29.7 1.0
CA C:TYR45 5.0 30.2 1.0
O C:HOH539 5.0 40.1 1.0

Reference:

M.Dennis, L.Esquirol, T.Nebl, J.Newman, C.Scott, T.S.Peat. The Evolving Story of Atzt, A Periplasmic Binding Protein Acta Crystallogr.,Sect.D V. 75 995 2019.
ISSN: ESSN 1399-0047
DOI: 10.1107/S2059798319013883
Page generated: Tue Jul 16 12:53:40 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy