Calcium in PDB 6pkx: Cryo-Em Structure of the Zebrafish TRPM2 Channel in the Presence of Adpr and CA2+

Calcium Binding Sites:

The binding sites of Calcium atom in the Cryo-Em Structure of the Zebrafish TRPM2 Channel in the Presence of Adpr and CA2+ (pdb code 6pkx). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Cryo-Em Structure of the Zebrafish TRPM2 Channel in the Presence of Adpr and CA2+, PDB code: 6pkx:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 6pkx

Go back to Calcium Binding Sites List in 6pkx
Calcium binding site 1 out of 2 in the Cryo-Em Structure of the Zebrafish TRPM2 Channel in the Presence of Adpr and CA2+


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of the Zebrafish TRPM2 Channel in the Presence of Adpr and CA2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca1601

b:95.2
occ:1.00
OE1 B:GLN860 2.4 94.1 1.0
OD1 B:ASN883 2.5 85.2 1.0
NE2 B:GLN860 2.7 94.1 1.0
CD B:GLN860 2.8 94.1 1.0
CG B:ASN883 3.6 85.2 1.0
OE2 B:GLU1088 3.6 81.0 1.0
ND2 B:ASN883 4.0 85.2 1.0
CG B:GLN860 4.1 94.1 1.0
OH B:TYR877 4.1 93.7 1.0
OD2 B:ASP886 4.4 77.4 1.0
CB B:GLN860 4.5 94.1 1.0
CD B:GLU1088 4.7 81.0 1.0
CB B:ASN883 4.9 85.2 1.0

Calcium binding site 2 out of 2 in 6pkx

Go back to Calcium Binding Sites List in 6pkx
Calcium binding site 2 out of 2 in the Cryo-Em Structure of the Zebrafish TRPM2 Channel in the Presence of Adpr and CA2+


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of the Zebrafish TRPM2 Channel in the Presence of Adpr and CA2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca1601

b:95.2
occ:1.00
OE1 D:GLN860 2.4 94.1 1.0
OD1 D:ASN883 2.5 85.2 1.0
NE2 D:GLN860 2.7 94.1 1.0
CD D:GLN860 2.8 94.1 1.0
CG D:ASN883 3.6 85.2 1.0
OE2 D:GLU1088 3.6 81.0 1.0
ND2 D:ASN883 4.0 85.2 1.0
CG D:GLN860 4.1 94.1 1.0
OH D:TYR877 4.1 93.7 1.0
OD2 D:ASP886 4.4 77.4 1.0
CB D:GLN860 4.5 94.1 1.0
CD D:GLU1088 4.7 81.0 1.0
CB D:ASN883 4.9 85.2 1.0

Reference:

Y.Yin, M.Wu, A.L.Hsu, W.F.Borschel, M.J.Borgnia, G.C.Lander, S.Y.Lee. Visualizing Structural Transitions of Ligand-Dependent Gating of the TRPM2 Channel. Nat Commun V. 10 3740 2019.
ISSN: ESSN 2041-1723
PubMed: 31431622
DOI: 10.1038/S41467-019-11733-5
Page generated: Sat Dec 12 07:25:28 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy