Calcium in PDB 6pkx: Cryo-Em Structure of the Zebrafish TRPM2 Channel in the Presence of Adpr and CA2+

The binding sites of Calcium atom in the Cryo-Em Structure of the Zebrafish TRPM2 Channel in the Presence of Adpr and CA2+ (pdb code 6pkx). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Cryo-Em Structure of the Zebrafish TRPM2 Channel in the Presence of Adpr and CA2+, PDB code: 6pkx:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Cryo-Em Structure of the Zebrafish TRPM2 Channel in the Presence of Adpr and CA2+


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of the Zebrafish TRPM2 Channel in the Presence of Adpr and CA2+ within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1601 b:95.2 occ:1.00 OE1 B:GLN860 2.4 94.1 1.0 OD1 B:ASN883 2.5 85.2 1.0 NE2 B:GLN860 2.7 94.1 1.0 CD B:GLN860 2.8 94.1 1.0 CG B:ASN883 3.6 85.2 1.0 OE2 B:GLU1088 3.6 81.0 1.0 ND2 B:ASN883 4.0 85.2 1.0 CG B:GLN860 4.1 94.1 1.0 OH B:TYR877 4.1 93.7 1.0 OD2 B:ASP886 4.4 77.4 1.0 CB B:GLN860 4.5 94.1 1.0 CD B:GLU1088 4.7 81.0 1.0 CB B:ASN883 4.9 85.2 1.0

Calcium binding site 2 out of 2 in the Cryo-Em Structure of the Zebrafish TRPM2 Channel in the Presence of Adpr and CA2+


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of the Zebrafish TRPM2 Channel in the Presence of Adpr and CA2+ within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca1601 b:95.2 occ:1.00 OE1 D:GLN860 2.4 94.1 1.0 OD1 D:ASN883 2.5 85.2 1.0 NE2 D:GLN860 2.7 94.1 1.0 CD D:GLN860 2.8 94.1 1.0 CG D:ASN883 3.6 85.2 1.0 OE2 D:GLU1088 3.6 81.0 1.0 ND2 D:ASN883 4.0 85.2 1.0 CG D:GLN860 4.1 94.1 1.0 OH D:TYR877 4.1 93.7 1.0 OD2 D:ASP886 4.4 77.4 1.0 CB D:GLN860 4.5 94.1 1.0 CD D:GLU1088 4.7 81.0 1.0 CB D:ASN883 4.9 85.2 1.0

Y.Yin, M.Wu, A.L.Hsu, W.F.Borschel, M.J.Borgnia, G.C.Lander, S.Y.Lee. Visualizing Structural Transitions of Ligand-Dependent Gating of the TRPM2 Channel. Nat Commun V. 10 3740 2019.
ISSN: ESSN 2041-1723
PubMed: 31431622
DOI: 10.1038/S41467-019-11733-5