Calcium in PDB 6put: Structure of Hiv Cleaved Synaptic Complex (Csc) Intasome Bound with Calcium

The structure of Structure of Hiv Cleaved Synaptic Complex (Csc) Intasome Bound with Calcium also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Calcium atom in the Structure of Hiv Cleaved Synaptic Complex (Csc) Intasome Bound with Calcium (pdb code 6put). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of Hiv Cleaved Synaptic Complex (Csc) Intasome Bound with Calcium, PDB code: 6put:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structure of Hiv Cleaved Synaptic Complex (Csc) Intasome Bound with Calcium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Hiv Cleaved Synaptic Complex (Csc) Intasome Bound with Calcium within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:78.2 occ:1.00 OD1 A:ASP64 2.4 28.4 1.0 OD2 A:ASP116 2.4 50.1 1.0 CG A:ASP116 3.2 54.2 1.0 CG A:ASP64 3.4 27.3 1.0 OD1 A:ASP116 3.5 57.1 1.0 OD2 A:ASP64 3.7 29.8 1.0 CA A:CA302 3.9 61.0 1.0 O3' F:DA21 4.1 33.2 0.5 O A:HOH425 4.2 64.5 1.0 O A:CYS65 4.3 48.3 1.0 O A:HOH402 4.3 34.8 1.0 CB A:ASP116 4.5 42.2 1.0 O F:HOH103 4.6 42.5 1.0 N A:CYS65 4.6 34.1 1.0 CB A:ASP64 4.7 23.0 1.0 CE2 A:PHE121 4.9 40.8 1.0 OE2 A:GLU152 4.9 23.5 1.0

Calcium binding site 2 out of 2 in the Structure of Hiv Cleaved Synaptic Complex (Csc) Intasome Bound with Calcium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Hiv Cleaved Synaptic Complex (Csc) Intasome Bound with Calcium within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca302 b:61.0 occ:1.00 O3' F:DA21 2.3 33.2 0.5 OD2 A:ASP64 2.3 29.8 1.0 OE1 A:GLU152 2.4 29.4 1.0 OE2 A:GLU152 3.1 23.5 1.0 CD A:GLU152 3.1 23.5 1.0 C4' F:DA21 3.2 24.3 0.5 C3' F:DA21 3.2 24.4 0.5 CG A:ASP64 3.4 27.3 1.0 OD1 A:ASP64 3.7 28.4 1.0 C2' F:DA21 3.8 22.7 0.5 C1' F:DA21 3.9 22.4 0.5 CA A:CA301 3.9 78.2 1.0 O5' F:DA21 4.0 21.7 0.5 O4' F:DA21 4.1 21.3 0.5 O A:CYS65 4.2 48.3 1.0 C5' F:DA21 4.2 25.6 0.5 ND2 A:ASN155 4.2 30.9 1.0 CG2 A:THR66 4.5 45.7 1.0 O3' F:DC20 4.6 22.6 1.0 CG A:GLU152 4.6 18.8 1.0 CB A:ASP64 4.6 23.0 1.0 C2' F:DC20 5.0 28.9 1.0 P F:DA21 5.0 20.6 0.5

D.O.Passos, M.Li, I.K.Jozwik, X.Z.Zhao, D.Santos-Martins, R.Yang, S.J.Smith, Y.Jeon, S.Forli, S.H.Hughes, T.R.Burke Jr., R.Craigie, D.Lyumkis. Structural Basis For Strand Transfer Inhibitor Binding to Hiv Intasomes. Science 2020.
ISSN: ESSN 1095-9203
PubMed: 32001521
DOI: 10.1126/SCIENCE.AAY8015