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Calcium in PDB 6puv: Structure of the Crd of CLEC10A

Protein crystallography data

The structure of Structure of the Crd of CLEC10A, PDB code: 6puv was solved by G.Birrane, P.V.Murphy, A.Gabba, J.G.Luz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.00 / 1.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 28.958, 42.701, 89.958, 90.00, 90.00, 90.00
R / Rfree (%) 15.5 / 18.9

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of the Crd of CLEC10A (pdb code 6puv). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of the Crd of CLEC10A, PDB code: 6puv:

Calcium binding site 1 out of 1 in 6puv

Go back to Calcium Binding Sites List in 6puv
Calcium binding site 1 out of 1 in the Structure of the Crd of CLEC10A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the Crd of CLEC10A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca201

b:11.8
occ:1.00
O A:VAL40 2.3 11.6 1.0
OD1 A:ASN42 2.3 13.2 1.0
O A:HOH370 2.4 14.0 1.0
OE2 A:GLU46 2.4 12.2 1.0
O A:HOH381 2.5 19.7 1.0
OE2 A:GLU127 2.5 12.7 1.0
OE1 A:GLU46 2.6 11.9 1.0
OE1 A:GLU127 2.7 11.3 1.0
CD A:GLU46 2.9 10.4 1.0
CD A:GLU127 2.9 10.5 1.0
C A:VAL40 3.5 10.0 1.0
CG A:ASN42 3.6 12.5 1.0
CA A:VAL40 4.3 9.9 1.0
N A:ASN42 4.3 12.2 1.0
CB A:VAL40 4.3 10.8 1.0
CB A:ASN42 4.3 12.1 1.0
N A:VAL40 4.4 9.9 1.0
CG A:GLU46 4.4 10.8 1.0
CG A:GLU127 4.4 9.7 1.0
OH A:TYR15 4.5 11.8 1.0
N A:ILE41 4.5 10.7 1.0
ND2 A:ASN42 4.5 14.4 1.0
O A:HOH319 4.5 16.5 1.0
CA A:ILE41 4.7 10.4 1.0
OG A:SER13 4.7 16.0 1.0
O A:HOH352 4.7 26.1 1.0
CG1 A:VAL40 4.7 11.4 1.0
C A:ILE41 4.9 10.8 1.0

Reference:

G.Birrane, P.V.Murphy. Structure of the Carbohydrate Recognition Domain of CLEC10A To Be Published.
Page generated: Tue Jul 16 13:05:44 2024

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