Atomistry » Calcium » PDB 6pu4-6q6x » 6pya
Atomistry »
  Calcium »
    PDB 6pu4-6q6x »
      6pya »

Calcium in PDB 6pya: Sex Hormone-Binding Globulin Mutant E176K in Complex with Ipi

Protein crystallography data

The structure of Sex Hormone-Binding Globulin Mutant E176K in Complex with Ipi, PDB code: 6pya was solved by P.W.Round, S.Das, F.Van Petegem, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.12 / 1.71
Space group P 43 2 2
Cell size a, b, c (Å), α, β, γ (°) 52.241, 52.241, 147.870, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 21.6

Calcium Binding Sites:

The binding sites of Calcium atom in the Sex Hormone-Binding Globulin Mutant E176K in Complex with Ipi (pdb code 6pya). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Sex Hormone-Binding Globulin Mutant E176K in Complex with Ipi, PDB code: 6pya:

Calcium binding site 1 out of 1 in 6pya

Go back to Calcium Binding Sites List in 6pya
Calcium binding site 1 out of 1 in the Sex Hormone-Binding Globulin Mutant E176K in Complex with Ipi


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Sex Hormone-Binding Globulin Mutant E176K in Complex with Ipi within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca302

b:26.0
occ:1.00
O A:HOH489 2.3 29.9 1.0
O A:GLU52 2.3 23.8 1.0
O A:ALA160 2.4 25.9 1.0
O A:HOH426 2.4 27.5 1.0
OD2 A:ASP50 2.4 32.6 1.0
O A:HOH501 2.5 32.5 1.0
OD1 A:ASP50 2.6 28.8 1.0
CG A:ASP50 2.8 25.5 1.0
C A:GLU52 3.5 23.4 1.0
C A:ALA160 3.6 29.4 1.0
O A:HOH514 4.2 38.6 1.0
CA A:GLU52 4.2 24.1 1.0
N A:GLU52 4.3 24.1 1.0
CA A:LEU161 4.3 28.7 1.0
CB A:ASP50 4.3 29.1 1.0
CB A:GLU52 4.4 24.7 1.0
N A:LEU161 4.4 26.3 1.0
N A:GLY53 4.4 23.8 1.0
O A:VAL158 4.5 26.3 1.0
CA A:GLY53 4.5 22.1 1.0
CA A:ALA160 4.6 25.9 1.0
CB A:ALA160 4.8 33.0 1.0
N A:ASP162 4.8 28.4 1.0
OD2 A:ASP162 4.8 38.6 0.5
CD1 A:LEU161 4.8 30.7 1.0
N A:ALA160 4.9 23.2 1.0

Reference:

P.Round, S.Das, T.S.Wu, K.Wahala, F.Van Petegem, G.L.Hammond. Molecular Interactions Between Sex Hormone-Binding Globulin and Non-Steroidal Ligands That Enhance Androgen Action. J.Biol.Chem. 2019.
ISSN: ESSN 1083-351X
PubMed: 31852737
DOI: 10.1074/JBC.RA119.011051
Page generated: Tue Jul 16 13:07:57 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy