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Calcium in PDB 6q20: Crystal Structure of Human 1E01 Fab in Complex with Influenza Virus Neuraminidase From A/Japan/305/1957 (H2N2)

Enzymatic activity of Crystal Structure of Human 1E01 Fab in Complex with Influenza Virus Neuraminidase From A/Japan/305/1957 (H2N2)

All present enzymatic activity of Crystal Structure of Human 1E01 Fab in Complex with Influenza Virus Neuraminidase From A/Japan/305/1957 (H2N2):
3.2.1.18;

Protein crystallography data

The structure of Crystal Structure of Human 1E01 Fab in Complex with Influenza Virus Neuraminidase From A/Japan/305/1957 (H2N2), PDB code: 6q20 was solved by X.Zhu, I.A.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.04 / 2.45
Space group P 4 21 2
Cell size a, b, c (Å), α, β, γ (°) 160.452, 160.452, 84.173, 90.00, 90.00, 90.00
R / Rfree (%) 21.7 / 27.2

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Human 1E01 Fab in Complex with Influenza Virus Neuraminidase From A/Japan/305/1957 (H2N2) (pdb code 6q20). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Human 1E01 Fab in Complex with Influenza Virus Neuraminidase From A/Japan/305/1957 (H2N2), PDB code: 6q20:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 6q20

Go back to Calcium Binding Sites List in 6q20
Calcium binding site 1 out of 2 in the Crystal Structure of Human 1E01 Fab in Complex with Influenza Virus Neuraminidase From A/Japan/305/1957 (H2N2)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Human 1E01 Fab in Complex with Influenza Virus Neuraminidase From A/Japan/305/1957 (H2N2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca511

b:96.0
occ:1.00
O A:PRO347 2.6 72.9 1.0
O A:GLY345 3.0 75.3 1.0
C A:GLY345 3.1 73.5 1.0
O A:ARG344 3.3 73.5 1.0
OD2 A:ASP324 3.4 56.4 1.0
O A:GLY297 3.5 61.2 1.0
CA A:GLY345 3.5 67.3 1.0
C A:PRO347 3.5 73.1 1.0
CG A:ASP324 3.7 54.1 1.0
N A:ASN346 3.7 73.4 1.0
O A:ASP293 3.8 65.2 1.0
O A:PRO326 3.9 66.0 1.0
CA A:GLY348 3.9 51.2 1.0
CA A:SER298 3.9 59.0 1.0
C A:GLY297 4.0 58.7 1.0
CB A:ASP324 4.1 45.8 1.0
N A:GLY348 4.1 65.5 1.0
OD1 A:ASP324 4.2 48.7 1.0
N A:SER298 4.2 58.5 1.0
C A:ARG344 4.2 58.8 1.0
CB A:SER298 4.2 53.4 1.0
CA A:ASN346 4.3 68.4 1.0
N A:GLY345 4.3 55.9 1.0
CD A:PRO326 4.4 61.9 1.0
O A:THR325 4.5 62.9 1.0
N A:PRO326 4.5 62.4 1.0
C A:ASN346 4.6 68.6 1.0
C A:THR325 4.6 57.5 1.0
CA A:PRO347 4.6 68.7 1.0
N A:PRO347 4.7 67.0 1.0
N A:THR325 4.8 51.9 1.0
C A:PRO326 4.9 59.3 1.0

Calcium binding site 2 out of 2 in 6q20

Go back to Calcium Binding Sites List in 6q20
Calcium binding site 2 out of 2 in the Crystal Structure of Human 1E01 Fab in Complex with Influenza Virus Neuraminidase From A/Japan/305/1957 (H2N2)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Human 1E01 Fab in Complex with Influenza Virus Neuraminidase From A/Japan/305/1957 (H2N2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca512

b:0.9
occ:0.25
CD2 A:HIS168 4.3 63.5 1.0
NE2 A:HIS168 4.9 63.5 1.0

Reference:

D.Stadlbauer, X.Zhu, M.Mcmahon, J.S.Turner, T.J.Wohlbold, A.J.Schmitz, S.Strohmeier, W.Yu, R.Nachbagauer, P.A.Mudd, I.A.Wilson, A.H.Ellebedy, F.Krammer. Broadly Protective Human Antibodies That Target the Active Site of Influenza Virus Neuraminidase. Science V. 366 499 2019.
ISSN: ESSN 1095-9203
PubMed: 31649200
DOI: 10.1126/SCIENCE.AAY0678
Page generated: Tue Jul 16 13:09:59 2024

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