Calcium in PDB 6q23: Crystal Structure of Human 1G01 Fab in Complex with Influenza Virus Neuraminidase From A/California/04/2009 (H1N1)
Enzymatic activity of Crystal Structure of Human 1G01 Fab in Complex with Influenza Virus Neuraminidase From A/California/04/2009 (H1N1)
All present enzymatic activity of Crystal Structure of Human 1G01 Fab in Complex with Influenza Virus Neuraminidase From A/California/04/2009 (H1N1):
3.2.1.18;
Protein crystallography data
The structure of Crystal Structure of Human 1G01 Fab in Complex with Influenza Virus Neuraminidase From A/California/04/2009 (H1N1), PDB code: 6q23
was solved by
X.Zhu,
I.A.Wilson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
43.30 /
3.27
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
106.594,
234.985,
106.275,
90.00,
106.40,
90.00
|
R / Rfree (%)
|
19.6 /
24.1
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Crystal Structure of Human 1G01 Fab in Complex with Influenza Virus Neuraminidase From A/California/04/2009 (H1N1)
(pdb code 6q23). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 9 binding sites of Calcium where determined in the
Crystal Structure of Human 1G01 Fab in Complex with Influenza Virus Neuraminidase From A/California/04/2009 (H1N1), PDB code: 6q23:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Calcium binding site 1 out
of 9 in 6q23
Go back to
Calcium Binding Sites List in 6q23
Calcium binding site 1 out
of 9 in the Crystal Structure of Human 1G01 Fab in Complex with Influenza Virus Neuraminidase From A/California/04/2009 (H1N1)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of Human 1G01 Fab in Complex with Influenza Virus Neuraminidase From A/California/04/2009 (H1N1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca502
b:68.9
occ:1.00
|
O
|
C:GLY345
|
2.3
|
0.3
|
1.0
|
O
|
C:GLY297
|
2.5
|
77.3
|
1.0
|
O
|
C:ASN347
|
2.5
|
81.5
|
1.0
|
O
|
C:ASP293
|
2.8
|
63.0
|
1.0
|
OD2
|
C:ASP324
|
3.0
|
61.1
|
1.0
|
C
|
C:GLY345
|
3.2
|
0.9
|
1.0
|
C
|
C:GLY297
|
3.5
|
71.8
|
1.0
|
C
|
C:ASN347
|
3.6
|
73.6
|
1.0
|
CA
|
C:GLY345
|
3.7
|
0.4
|
1.0
|
O
|
C:ALA346
|
3.8
|
0.9
|
1.0
|
CG
|
C:ASP324
|
3.9
|
61.0
|
1.0
|
C
|
C:ALA346
|
4.0
|
99.3
|
1.0
|
CA
|
C:GLY348
|
4.0
|
54.3
|
1.0
|
C
|
C:ASP293
|
4.1
|
65.5
|
1.0
|
N
|
C:ALA346
|
4.2
|
0.3
|
1.0
|
O
|
C:ASN344
|
4.2
|
73.7
|
1.0
|
N
|
C:GLY297
|
4.2
|
72.9
|
1.0
|
N
|
C:SER298
|
4.2
|
68.4
|
1.0
|
N
|
C:GLY348
|
4.3
|
60.4
|
1.0
|
CA
|
C:SER298
|
4.3
|
64.1
|
1.0
|
CA
|
C:GLY297
|
4.4
|
73.6
|
1.0
|
N
|
C:ASN347
|
4.5
|
87.2
|
1.0
|
CB
|
C:ASP324
|
4.5
|
65.1
|
1.0
|
O
|
C:PRO326
|
4.5
|
53.8
|
1.0
|
CA
|
C:ASN294
|
4.6
|
75.0
|
1.0
|
CA
|
C:ALA346
|
4.6
|
0.3
|
1.0
|
OD1
|
C:ASP324
|
4.7
|
53.1
|
1.0
|
CA
|
C:ASN347
|
4.7
|
77.3
|
1.0
|
N
|
C:ASN294
|
4.8
|
70.5
|
1.0
|
N
|
C:GLY345
|
4.8
|
95.3
|
1.0
|
C
|
C:ASN294
|
4.9
|
73.2
|
1.0
|
C
|
C:ASN344
|
4.9
|
85.5
|
1.0
|
|
Calcium binding site 2 out
of 9 in 6q23
Go back to
Calcium Binding Sites List in 6q23
Calcium binding site 2 out
of 9 in the Crystal Structure of Human 1G01 Fab in Complex with Influenza Virus Neuraminidase From A/California/04/2009 (H1N1)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of Human 1G01 Fab in Complex with Influenza Virus Neuraminidase From A/California/04/2009 (H1N1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca503
b:0.8
occ:1.00
|
O
|
C:ASN389
|
2.3
|
0.2
|
1.0
|
OD1
|
C:ASP379
|
2.5
|
60.7
|
1.0
|
OD2
|
C:ASP379
|
2.5
|
65.4
|
1.0
|
CG
|
C:ASP379
|
2.8
|
69.3
|
1.0
|
C
|
C:ASN389
|
3.4
|
98.4
|
1.0
|
O
|
C:ASP387
|
3.5
|
0.2
|
1.0
|
N
|
C:ASN389
|
3.7
|
96.5
|
1.0
|
C
|
C:ASP387
|
3.8
|
0.7
|
1.0
|
CA
|
C:ASN389
|
4.0
|
92.6
|
1.0
|
CB
|
C:ASP387
|
4.1
|
0.1
|
1.0
|
CB
|
C:ASN389
|
4.2
|
85.0
|
1.0
|
CB
|
C:ASP379
|
4.3
|
72.1
|
1.0
|
N
|
C:ASN388
|
4.4
|
0.6
|
1.0
|
CB
|
C:ASN381
|
4.4
|
73.3
|
1.0
|
CA
|
C:ASP387
|
4.4
|
0.2
|
1.0
|
C
|
C:ASN388
|
4.4
|
94.8
|
1.0
|
N
|
C:PHE390
|
4.6
|
94.7
|
1.0
|
N
|
C:ASP387
|
4.6
|
1.0
|
1.0
|
C
|
C:ASN381
|
4.6
|
68.6
|
1.0
|
CA
|
C:ASN388
|
4.8
|
0.4
|
1.0
|
N
|
C:ASN381
|
4.8
|
72.6
|
1.0
|
N
|
C:GLY382
|
4.8
|
74.1
|
1.0
|
O
|
C:ASN381
|
4.8
|
62.0
|
1.0
|
CA
|
C:ASN381
|
4.9
|
69.0
|
1.0
|
OG
|
C:SER319
|
4.9
|
54.6
|
1.0
|
|
Calcium binding site 3 out
of 9 in 6q23
Go back to
Calcium Binding Sites List in 6q23
Calcium binding site 3 out
of 9 in the Crystal Structure of Human 1G01 Fab in Complex with Influenza Virus Neuraminidase From A/California/04/2009 (H1N1)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of Human 1G01 Fab in Complex with Influenza Virus Neuraminidase From A/California/04/2009 (H1N1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca502
b:0.6
occ:1.00
|
OD2
|
B:ASP324
|
2.3
|
54.1
|
1.0
|
O
|
B:ASN347
|
2.3
|
45.3
|
1.0
|
O
|
B:GLY297
|
2.5
|
66.3
|
1.0
|
O
|
B:ASP293
|
2.7
|
43.8
|
1.0
|
O
|
B:GLY345
|
3.0
|
81.1
|
1.0
|
CG
|
B:ASP324
|
3.2
|
61.3
|
1.0
|
C
|
B:ASN347
|
3.4
|
53.0
|
1.0
|
CA
|
B:GLY348
|
3.5
|
49.1
|
1.0
|
C
|
B:GLY297
|
3.6
|
66.4
|
1.0
|
CB
|
B:ASP324
|
3.8
|
60.2
|
1.0
|
C
|
B:GLY345
|
3.9
|
82.8
|
1.0
|
N
|
B:GLY348
|
3.9
|
47.8
|
1.0
|
C
|
B:ASP293
|
3.9
|
45.8
|
1.0
|
O
|
B:ALA346
|
4.0
|
88.2
|
1.0
|
OD1
|
B:ASP324
|
4.1
|
62.7
|
1.0
|
CA
|
B:SER298
|
4.2
|
58.2
|
1.0
|
N
|
B:SER298
|
4.3
|
60.0
|
1.0
|
C
|
B:ALA346
|
4.4
|
74.7
|
1.0
|
O
|
B:PRO326
|
4.4
|
72.3
|
1.0
|
CA
|
B:GLY345
|
4.5
|
79.6
|
1.0
|
O
|
B:ASN344
|
4.6
|
71.4
|
1.0
|
N
|
B:ASN347
|
4.6
|
68.3
|
1.0
|
CA
|
B:ASN347
|
4.7
|
61.6
|
1.0
|
CA
|
B:ASN294
|
4.7
|
48.6
|
1.0
|
N
|
B:GLY297
|
4.7
|
73.1
|
1.0
|
N
|
B:ASN294
|
4.7
|
45.4
|
1.0
|
CA
|
B:GLY297
|
4.8
|
67.4
|
1.0
|
N
|
B:ALA346
|
4.8
|
81.8
|
1.0
|
CA
|
B:ASP293
|
4.9
|
49.8
|
1.0
|
C
|
B:GLY348
|
5.0
|
49.2
|
1.0
|
N
|
B:ASP293
|
5.0
|
45.2
|
1.0
|
|
Calcium binding site 4 out
of 9 in 6q23
Go back to
Calcium Binding Sites List in 6q23
Calcium binding site 4 out
of 9 in the Crystal Structure of Human 1G01 Fab in Complex with Influenza Virus Neuraminidase From A/California/04/2009 (H1N1)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of Human 1G01 Fab in Complex with Influenza Virus Neuraminidase From A/California/04/2009 (H1N1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca503
b:0.9
occ:1.00
|
OD1
|
B:ASP379
|
2.2
|
62.1
|
1.0
|
OD2
|
B:ASP387
|
2.4
|
0.5
|
1.0
|
O
|
B:ASN389
|
2.4
|
0.2
|
1.0
|
OD1
|
B:ASP387
|
2.5
|
0.4
|
1.0
|
CG
|
B:ASP387
|
2.7
|
0.2
|
1.0
|
CG
|
B:ASP379
|
2.9
|
62.2
|
1.0
|
OD2
|
B:ASP379
|
3.0
|
53.8
|
1.0
|
C
|
B:ASN389
|
3.4
|
0.1
|
1.0
|
N
|
B:ASN389
|
3.5
|
0.9
|
1.0
|
CA
|
B:ASN389
|
3.7
|
95.0
|
1.0
|
CB
|
B:ASN389
|
3.7
|
83.6
|
1.0
|
CB
|
B:ASN381
|
3.8
|
59.0
|
1.0
|
OD1
|
B:ASN381
|
3.9
|
67.8
|
1.0
|
O
|
B:ASP387
|
4.0
|
0.4
|
1.0
|
CB
|
B:ASP387
|
4.1
|
0.3
|
1.0
|
C
|
B:ASP387
|
4.2
|
0.3
|
1.0
|
CG
|
B:ASN381
|
4.3
|
64.2
|
1.0
|
CB
|
B:ASP379
|
4.3
|
60.4
|
1.0
|
N
|
B:ASN381
|
4.3
|
56.4
|
1.0
|
CA
|
B:ASN381
|
4.4
|
56.6
|
1.0
|
C
|
B:ASN388
|
4.5
|
0.2
|
1.0
|
C
|
B:ASN381
|
4.5
|
59.0
|
1.0
|
N
|
B:PHE390
|
4.6
|
0.5
|
1.0
|
N
|
B:ASN388
|
4.6
|
0.6
|
1.0
|
CA
|
B:ASP387
|
4.7
|
0.0
|
1.0
|
OD1
|
B:ASN389
|
4.7
|
56.0
|
1.0
|
CG
|
B:ASN389
|
4.7
|
79.6
|
1.0
|
N
|
B:GLY382
|
4.8
|
65.4
|
1.0
|
CA
|
B:ASP379
|
4.8
|
60.4
|
1.0
|
O
|
B:ASN381
|
4.8
|
60.1
|
1.0
|
CA
|
B:ASN388
|
4.9
|
0.5
|
1.0
|
C
|
B:ASP379
|
5.0
|
57.0
|
1.0
|
|
Calcium binding site 5 out
of 9 in 6q23
Go back to
Calcium Binding Sites List in 6q23
Calcium binding site 5 out
of 9 in the Crystal Structure of Human 1G01 Fab in Complex with Influenza Virus Neuraminidase From A/California/04/2009 (H1N1)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of Human 1G01 Fab in Complex with Influenza Virus Neuraminidase From A/California/04/2009 (H1N1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca503
b:99.7
occ:1.00
|
O
|
A:GLY297
|
2.5
|
72.7
|
1.0
|
O
|
A:ASN347
|
2.6
|
89.7
|
1.0
|
OD2
|
A:ASP324
|
2.6
|
55.5
|
1.0
|
O
|
A:GLY345
|
2.8
|
93.4
|
1.0
|
O
|
A:ASP293
|
2.8
|
60.2
|
1.0
|
CG
|
A:ASP324
|
3.4
|
53.2
|
1.0
|
C
|
A:GLY297
|
3.6
|
69.1
|
1.0
|
C
|
A:GLY345
|
3.6
|
96.4
|
1.0
|
C
|
A:ASN347
|
3.6
|
86.7
|
1.0
|
CA
|
A:GLY348
|
3.8
|
74.4
|
1.0
|
O
|
A:ALA346
|
4.0
|
0.7
|
1.0
|
CB
|
A:ASP324
|
4.0
|
55.7
|
1.0
|
C
|
A:ASP293
|
4.0
|
60.4
|
1.0
|
CA
|
A:GLY345
|
4.1
|
94.6
|
1.0
|
N
|
A:GLY348
|
4.2
|
74.8
|
1.0
|
OD1
|
A:ASP324
|
4.2
|
51.0
|
1.0
|
O
|
A:ASN344
|
4.3
|
0.2
|
1.0
|
O
|
A:PRO326
|
4.3
|
57.7
|
1.0
|
CA
|
A:SER298
|
4.4
|
64.5
|
1.0
|
C
|
A:ALA346
|
4.4
|
0.5
|
1.0
|
N
|
A:SER298
|
4.4
|
64.4
|
1.0
|
N
|
A:GLY297
|
4.6
|
67.0
|
1.0
|
N
|
A:ALA346
|
4.6
|
0.0
|
1.0
|
CA
|
A:GLY297
|
4.6
|
65.4
|
1.0
|
N
|
A:ASN347
|
4.7
|
0.6
|
1.0
|
CA
|
A:ASN294
|
4.8
|
59.5
|
1.0
|
N
|
A:ASN294
|
4.8
|
59.9
|
1.0
|
CA
|
A:ASN347
|
4.8
|
88.5
|
1.0
|
|
Calcium binding site 6 out
of 9 in 6q23
Go back to
Calcium Binding Sites List in 6q23
Calcium binding site 6 out
of 9 in the Crystal Structure of Human 1G01 Fab in Complex with Influenza Virus Neuraminidase From A/California/04/2009 (H1N1)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of Human 1G01 Fab in Complex with Influenza Virus Neuraminidase From A/California/04/2009 (H1N1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca504
b:1.0
occ:1.00
|
OD2
|
A:ASP379
|
2.5
|
94.8
|
1.0
|
OD1
|
A:ASP379
|
2.7
|
74.9
|
1.0
|
OD1
|
A:ASP387
|
2.7
|
89.5
|
1.0
|
CG
|
A:ASP379
|
2.9
|
84.9
|
1.0
|
O
|
A:ASN389
|
3.1
|
0.0
|
1.0
|
CG
|
A:ASP387
|
3.4
|
91.2
|
1.0
|
O
|
A:ASP387
|
3.4
|
94.6
|
1.0
|
OD2
|
A:ASP387
|
3.7
|
0.7
|
1.0
|
C
|
A:ASP387
|
3.9
|
91.0
|
1.0
|
N
|
A:ASN389
|
4.0
|
0.1
|
1.0
|
C
|
A:ASN389
|
4.1
|
0.2
|
1.0
|
CB
|
A:ASN381
|
4.3
|
80.8
|
1.0
|
C
|
A:ASN381
|
4.3
|
73.2
|
1.0
|
CB
|
A:ASP379
|
4.4
|
72.2
|
1.0
|
CA
|
A:ASN389
|
4.4
|
0.6
|
1.0
|
N
|
A:ASP387
|
4.5
|
71.7
|
1.0
|
CA
|
A:ASP387
|
4.5
|
80.8
|
1.0
|
CB
|
A:ASP387
|
4.5
|
83.8
|
1.0
|
CB
|
A:ASN389
|
4.5
|
0.5
|
1.0
|
N
|
A:GLY382
|
4.5
|
71.6
|
1.0
|
O
|
A:ASN381
|
4.5
|
77.5
|
1.0
|
N
|
A:ASN388
|
4.6
|
95.4
|
1.0
|
O
|
A:GLY385
|
4.6
|
63.6
|
1.0
|
CA
|
A:ASN381
|
4.7
|
79.4
|
1.0
|
CA
|
A:GLY382
|
4.7
|
74.6
|
1.0
|
N
|
A:ASN381
|
4.7
|
82.0
|
1.0
|
C
|
A:ASN388
|
4.8
|
93.2
|
1.0
|
C
|
A:GLY385
|
4.9
|
65.8
|
1.0
|
OG
|
A:SER319
|
4.9
|
52.3
|
1.0
|
CA
|
A:ASN388
|
4.9
|
91.2
|
1.0
|
OD1
|
A:ASN381
|
5.0
|
91.3
|
1.0
|
|
Calcium binding site 7 out
of 9 in 6q23
Go back to
Calcium Binding Sites List in 6q23
Calcium binding site 7 out
of 9 in the Crystal Structure of Human 1G01 Fab in Complex with Influenza Virus Neuraminidase From A/California/04/2009 (H1N1)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of Human 1G01 Fab in Complex with Influenza Virus Neuraminidase From A/California/04/2009 (H1N1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca501
b:68.7
occ:1.00
|
OD1
|
D:ASP113
|
3.1
|
50.5
|
1.0
|
OD2
|
D:ASP113
|
3.4
|
41.7
|
1.0
|
CG
|
D:ASP113
|
3.6
|
48.8
|
1.0
|
OD2
|
C:ASP113
|
3.9
|
45.0
|
1.0
|
OD1
|
C:ASP113
|
4.0
|
53.7
|
1.0
|
CG
|
C:ASP113
|
4.4
|
51.3
|
1.0
|
NZ
|
A:LYS111
|
4.4
|
56.1
|
1.0
|
OD2
|
A:ASP113
|
4.4
|
60.8
|
1.0
|
OD1
|
A:ASP113
|
4.5
|
69.0
|
1.0
|
OD2
|
B:ASP113
|
4.6
|
64.8
|
1.0
|
O
|
D:LYS111
|
4.6
|
50.8
|
1.0
|
OD1
|
B:ASP113
|
4.8
|
55.7
|
1.0
|
CG
|
A:ASP113
|
4.8
|
59.1
|
1.0
|
O
|
A:LYS111
|
5.0
|
45.2
|
1.0
|
|
Calcium binding site 8 out
of 9 in 6q23
Go back to
Calcium Binding Sites List in 6q23
Calcium binding site 8 out
of 9 in the Crystal Structure of Human 1G01 Fab in Complex with Influenza Virus Neuraminidase From A/California/04/2009 (H1N1)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of Human 1G01 Fab in Complex with Influenza Virus Neuraminidase From A/California/04/2009 (H1N1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca503
b:96.0
occ:1.00
|
O
|
D:GLY345
|
2.3
|
0.8
|
1.0
|
O
|
D:ASN347
|
2.3
|
64.9
|
1.0
|
O
|
D:ASP293
|
2.4
|
65.3
|
1.0
|
O
|
D:GLY297
|
2.5
|
80.7
|
1.0
|
OD2
|
D:ASP324
|
2.7
|
60.2
|
1.0
|
C
|
D:GLY345
|
3.4
|
0.3
|
1.0
|
C
|
D:ASN347
|
3.5
|
73.4
|
1.0
|
C
|
D:ASP293
|
3.6
|
74.3
|
1.0
|
C
|
D:GLY297
|
3.7
|
76.0
|
1.0
|
CG
|
D:ASP324
|
3.7
|
59.4
|
1.0
|
CA
|
D:GLY348
|
3.9
|
61.6
|
1.0
|
O
|
D:ALA346
|
4.0
|
0.3
|
1.0
|
C
|
D:ALA346
|
4.1
|
0.9
|
1.0
|
N
|
D:GLY348
|
4.1
|
68.2
|
1.0
|
CA
|
D:GLY345
|
4.2
|
94.2
|
1.0
|
CA
|
D:ASN294
|
4.2
|
73.0
|
1.0
|
N
|
D:GLY297
|
4.3
|
81.7
|
1.0
|
N
|
D:ASN294
|
4.4
|
79.6
|
1.0
|
N
|
D:ALA346
|
4.4
|
0.5
|
1.0
|
N
|
D:ASN347
|
4.4
|
93.5
|
1.0
|
CB
|
D:ASP324
|
4.4
|
59.9
|
1.0
|
CA
|
D:GLY297
|
4.5
|
78.6
|
1.0
|
C
|
D:ASN294
|
4.6
|
68.5
|
1.0
|
OD1
|
D:ASP324
|
4.6
|
49.4
|
1.0
|
N
|
D:SER298
|
4.6
|
72.5
|
1.0
|
CA
|
D:ASN347
|
4.6
|
80.3
|
1.0
|
CA
|
D:ALA346
|
4.6
|
0.4
|
1.0
|
CA
|
D:ASP293
|
4.7
|
73.4
|
1.0
|
CA
|
D:SER298
|
4.8
|
71.5
|
1.0
|
CB
|
D:ASP293
|
4.9
|
85.9
|
1.0
|
N
|
D:ASP293
|
4.9
|
68.7
|
1.0
|
O
|
D:PRO326
|
4.9
|
68.7
|
1.0
|
N
|
D:TRP295
|
4.9
|
69.3
|
1.0
|
O
|
D:ASN294
|
4.9
|
72.2
|
1.0
|
O
|
D:ASN344
|
5.0
|
73.0
|
1.0
|
OD1
|
D:ASN294
|
5.0
|
52.3
|
1.0
|
|
Calcium binding site 9 out
of 9 in 6q23
Go back to
Calcium Binding Sites List in 6q23
Calcium binding site 9 out
of 9 in the Crystal Structure of Human 1G01 Fab in Complex with Influenza Virus Neuraminidase From A/California/04/2009 (H1N1)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Crystal Structure of Human 1G01 Fab in Complex with Influenza Virus Neuraminidase From A/California/04/2009 (H1N1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca504
b:0.7
occ:1.00
|
O
|
D:ASN389
|
2.5
|
0.3
|
1.0
|
OD1
|
D:ASP379
|
2.6
|
90.5
|
1.0
|
OD1
|
D:ASP387
|
2.7
|
0.6
|
1.0
|
C
|
D:ASN389
|
3.3
|
0.4
|
1.0
|
CB
|
D:ASN389
|
3.3
|
0.2
|
1.0
|
CG
|
D:ASP379
|
3.5
|
83.5
|
1.0
|
CA
|
D:ASN389
|
3.6
|
0.2
|
1.0
|
CG
|
D:ASP387
|
3.6
|
0.0
|
1.0
|
OD2
|
D:ASP379
|
3.7
|
86.2
|
1.0
|
N
|
D:ASN389
|
3.7
|
0.6
|
1.0
|
OD2
|
D:ASP387
|
3.8
|
0.5
|
1.0
|
CB
|
D:ASN381
|
3.9
|
90.5
|
1.0
|
ND2
|
D:ASN381
|
3.9
|
0.7
|
1.0
|
CG
|
D:ASN389
|
4.1
|
97.2
|
1.0
|
CG
|
D:ASN381
|
4.2
|
94.2
|
1.0
|
N
|
D:ASN381
|
4.3
|
88.1
|
1.0
|
N
|
D:PHE390
|
4.4
|
0.6
|
1.0
|
OD1
|
D:ASN389
|
4.5
|
73.7
|
1.0
|
CA
|
D:ASN381
|
4.6
|
92.5
|
1.0
|
O
|
D:ASP387
|
4.8
|
0.5
|
1.0
|
CB
|
D:ASP379
|
4.8
|
81.2
|
1.0
|
C
|
D:ASN388
|
4.8
|
0.1
|
1.0
|
CD
|
D:PRO380
|
4.8
|
82.8
|
1.0
|
C
|
D:ASP387
|
4.9
|
0.7
|
1.0
|
C
|
D:ASN381
|
4.9
|
87.8
|
1.0
|
ND2
|
D:ASN389
|
5.0
|
88.3
|
1.0
|
CB
|
D:ASP387
|
5.0
|
0.6
|
1.0
|
CG
|
D:PRO380
|
5.0
|
81.9
|
1.0
|
|
Reference:
D.Stadlbauer,
X.Zhu,
M.Mcmahon,
J.S.Turner,
T.J.Wohlbold,
A.J.Schmitz,
S.Strohmeier,
W.Yu,
R.Nachbagauer,
P.A.Mudd,
I.A.Wilson,
A.H.Ellebedy,
F.Krammer.
Broadly Protective Human Antibodies That Target the Active Site of Influenza Virus Neuraminidase. Science V. 366 499 2019.
ISSN: ESSN 1095-9203
PubMed: 31649200
DOI: 10.1126/SCIENCE.AAY0678
Page generated: Tue Jul 16 13:09:59 2024
|