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Calcium in PDB 6qs9: Bovine Serum Albumin in Complex with Ketoprofen

Protein crystallography data

The structure of Bovine Serum Albumin in Complex with Ketoprofen, PDB code: 6qs9 was solved by S.Donini, E.Parisini, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.59 / 2.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 212.486, 44.374, 142.715, 90.00, 113.24, 90.00
R / Rfree (%) 21.5 / 27.2

Calcium Binding Sites:

The binding sites of Calcium atom in the Bovine Serum Albumin in Complex with Ketoprofen (pdb code 6qs9). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Bovine Serum Albumin in Complex with Ketoprofen, PDB code: 6qs9:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 6qs9

Go back to Calcium Binding Sites List in 6qs9
Calcium binding site 1 out of 4 in the Bovine Serum Albumin in Complex with Ketoprofen


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Bovine Serum Albumin in Complex with Ketoprofen within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca602

b:67.9
occ:1.00
O A:HOH711 2.6 56.2 1.0
OG A:SER109 2.6 57.3 1.0
OD2 A:ASP111 2.7 87.9 1.0
O A:SER109 2.7 56.3 1.0
CG A:ASP111 3.6 87.2 1.0
CB A:SER109 3.8 46.3 1.0
C A:SER109 3.9 54.4 1.0
OD1 A:ASP111 4.2 88.2 1.0
OD1 A:ASP107 4.2 53.4 1.0
OD2 A:ASP107 4.3 58.5 1.0
CA A:SER109 4.5 49.5 1.0
CB A:ASP111 4.6 69.2 1.0
CG A:ASP107 4.7 53.9 1.0
NZ A:LYS465 4.8 55.7 1.0
N A:PRO110 4.9 54.2 1.0
N A:ASP111 5.0 72.9 1.0

Calcium binding site 2 out of 4 in 6qs9

Go back to Calcium Binding Sites List in 6qs9
Calcium binding site 2 out of 4 in the Bovine Serum Albumin in Complex with Ketoprofen


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Bovine Serum Albumin in Complex with Ketoprofen within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca603

b:91.3
occ:1.00
OE2 A:GLU251 3.3 52.3 1.0
OE1 A:GLU251 3.6 62.6 1.0
CD A:GLU251 3.7 53.5 1.0
O A:HOH725 4.4 50.8 1.0
NH2 A:ARG10 4.4 42.0 1.0
OE2 A:GLU6 4.6 66.3 1.0
O A:HOH719 4.7 30.0 1.0

Calcium binding site 3 out of 4 in 6qs9

Go back to Calcium Binding Sites List in 6qs9
Calcium binding site 3 out of 4 in the Bovine Serum Albumin in Complex with Ketoprofen


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Bovine Serum Albumin in Complex with Ketoprofen within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca602

b:65.0
occ:1.00
OG B:SER109 2.5 55.4 1.0
OD2 B:ASP111 2.7 67.0 1.0
O B:SER109 2.7 56.5 1.0
O B:HOH709 3.0 50.2 1.0
CG B:ASP111 3.5 71.1 1.0
OD1 B:ASP111 3.7 73.3 1.0
CB B:SER109 3.8 43.6 1.0
C B:SER109 3.8 50.9 1.0
OD1 B:ASP107 4.0 41.1 1.0
OD2 B:ASP107 4.2 48.6 1.0
CA B:SER109 4.4 45.9 1.0
CG B:ASP107 4.6 42.0 1.0
CB B:ASP111 4.7 57.1 1.0
N B:PRO110 4.9 48.7 1.0

Calcium binding site 4 out of 4 in 6qs9

Go back to Calcium Binding Sites List in 6qs9
Calcium binding site 4 out of 4 in the Bovine Serum Albumin in Complex with Ketoprofen


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Bovine Serum Albumin in Complex with Ketoprofen within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca603

b:76.7
occ:1.00
OE1 B:GLU251 2.3 62.0 1.0
O B:HOH714 3.2 42.1 1.0
CD B:GLU251 3.2 57.0 1.0
CG B:ASP248 3.6 49.6 1.0
OE2 B:GLU251 3.6 60.7 1.0
CB B:ASP248 3.6 44.9 1.0
OD2 B:ASP248 3.6 48.0 1.0
OE2 B:GLU6 4.0 61.8 1.0
OD1 B:ASP248 4.1 51.1 1.0
O B:HOH720 4.3 30.0 1.0
CG B:GLU251 4.4 47.3 1.0
CB B:GLU251 4.4 45.5 1.0
CA B:ASP248 4.9 39.7 1.0
CG B:GLU243 4.9 42.9 1.0
CD B:GLU6 5.0 64.9 1.0

Reference:

S.Donini, E.Parisini. Bovine Serum Albumin in Complex with Ketoprofen To Be Published.
Page generated: Tue Jul 16 14:00:58 2024

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