Atomistry » Calcium » PDB 6qph-6r3m » 6qud
Atomistry »
  Calcium »
    PDB 6qph-6r3m »
      6qud »

Calcium in PDB 6qud: 2-Deoxy-Galactose Reaction Intermediate of A Truncated Beta- Galactosidase III From Bifidobacterium Bifidum

Enzymatic activity of 2-Deoxy-Galactose Reaction Intermediate of A Truncated Beta- Galactosidase III From Bifidobacterium Bifidum

All present enzymatic activity of 2-Deoxy-Galactose Reaction Intermediate of A Truncated Beta- Galactosidase III From Bifidobacterium Bifidum:
3.2.1.23;

Protein crystallography data

The structure of 2-Deoxy-Galactose Reaction Intermediate of A Truncated Beta- Galactosidase III From Bifidobacterium Bifidum, PDB code: 6qud was solved by S.S.Thirup, J.A.Nielsen, J.L.Andersen, H.Alsarraf, M.Blaise, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.81 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 70.210, 53.920, 112.620, 90.00, 106.59, 90.00
R / Rfree (%) 16.5 / 20.9

Calcium Binding Sites:

The binding sites of Calcium atom in the 2-Deoxy-Galactose Reaction Intermediate of A Truncated Beta- Galactosidase III From Bifidobacterium Bifidum (pdb code 6qud). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the 2-Deoxy-Galactose Reaction Intermediate of A Truncated Beta- Galactosidase III From Bifidobacterium Bifidum, PDB code: 6qud:

Calcium binding site 1 out of 1 in 6qud

Go back to Calcium Binding Sites List in 6qud
Calcium binding site 1 out of 1 in the 2-Deoxy-Galactose Reaction Intermediate of A Truncated Beta- Galactosidase III From Bifidobacterium Bifidum


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of 2-Deoxy-Galactose Reaction Intermediate of A Truncated Beta- Galactosidase III From Bifidobacterium Bifidum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2002

b:39.4
occ:1.00
 O A:VAL678 2.4 28.7 1.0
O A:ASN675 2.4 22.9 1.0
OD2 A:ASP707 2.4 26.1 1.0
O A:HOH2265 2.5 23.3 1.0
O A:HOH2647 2.5 25.4 1.0
O A:HOH2725 2.5 37.1 1.0
CG A:ASP707 3.3 28.0 1.0
C A:ASN675 3.5 22.5 1.0
C A:VAL678 3.6 26.3 1.0
CA A:ASP676 3.8 30.0 1.0
CB A:ASP707 3.8 25.3 1.0
N A:ASP676 4.1 26.1 1.0
O A:HOH2423 4.2 36.1 1.0
OD1 A:ASP707 4.2 29.9 1.0
ND1 A:HIS679 4.3 37.6 1.0
C A:ASP676 4.3 29.8 1.0
CA A:HIS679 4.3 27.1 1.0
N A:HIS679 4.4 27.3 1.0
N A:VAL678 4.4 29.4 1.0
O A:GLN671 4.5 20.5 1.0
OD1 A:ASP676 4.5 41.8 1.0
CA A:VAL678 4.6 29.3 1.0
CA A:ASN675 4.7 22.1 1.0
O A:ASP676 4.7 31.3 1.0
N A:ASP677 4.8 28.8 1.0
O A:SER672 4.8 22.2 1.0
CG2 A:VAL678 4.9 24.6 1.0

Reference:

J.A.Nielsen, J.L.Andersen, H.Alsarraf, M.Blaise, S.S.Thirup, M.K.Larsen, J.F.Cramer. Truncated Beta-Galactosidase III From Bifidobacterium Bifidum To Be Published.
Page generated: Tue Jul 16 14:05:08 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy