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Calcium in PDB 6qxf: CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System

Calcium Binding Sites:

The binding sites of Calcium atom in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System (pdb code 6qxf). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System, PDB code: 6qxf:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 6qxf

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Calcium binding site 1 out of 8 in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System


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Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:0.5
occ:1.00
 OE1 A:GLU128 2.6 0.0 1.0
OE2 A:GLU128 2.6 1.0 1.0
OD1 A:ASP122 2.6 0.1 1.0
O D:ALA132 2.7 0.2 1.0
O A:GLU123 2.8 0.2 1.0
CD A:GLU128 2.9 0.9 1.0
CG A:ASP122 3.8 0.6 1.0
C A:GLU123 3.9 0.4 1.0
C D:ALA132 3.9 0.1 1.0
OE2 A:GLU123 4.0 0.6 1.0
OD2 A:ASP122 4.3 0.7 1.0
O D:LEU133 4.3 0.5 1.0
C D:LEU133 4.4 0.1 1.0
CG A:GLU128 4.5 0.3 1.0
N A:GLU123 4.6 0.4 1.0
CD A:GLU123 4.6 0.2 1.0
CA A:ILE124 4.7 97.7 1.0
CA D:LEU133 4.7 75.6 1.0
N A:ILE124 4.7 89.5 1.0
N D:LEU133 4.8 69.0 1.0
CA D:ALA132 4.8 0.1 1.0
CA A:GLU123 4.9 0.8 1.0
N D:GLY134 4.9 0.2 1.0
CG A:GLU123 4.9 0.4 1.0
CB A:ASP122 4.9 0.1 1.0

Calcium binding site 2 out of 8 in 6qxf

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Calcium binding site 2 out of 8 in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca501

b:0.9
occ:1.00
 OE2 B:GLU128 2.5 0.5 1.0
OD1 B:ASP122 2.6 0.7 1.0
O B:GLU123 2.6 0.4 1.0
OE1 B:GLU128 2.7 0.2 1.0
O C:ALA132 2.8 0.3 1.0
CD B:GLU128 3.0 0.2 1.0
CG B:ASP122 3.7 0.7 1.0
C B:GLU123 3.7 0.7 1.0
O C:LEU133 4.0 99.5 1.0
C C:ALA132 4.0 0.9 1.0
C C:LEU133 4.2 0.3 1.0
OD2 B:ASP122 4.2 0.1 1.0
N B:GLU123 4.3 0.1 1.0
CA C:LEU133 4.4 0.6 1.0
CG B:GLU128 4.5 0.7 1.0
OE2 B:GLU123 4.5 0.1 1.0
CG B:GLU123 4.5 0.9 1.0
CA B:GLU123 4.6 0.4 1.0
N B:ILE124 4.7 0.7 1.0
N C:LEU133 4.7 0.4 1.0
CA B:ILE124 4.8 0.3 1.0
CD B:GLU123 4.8 0.9 1.0
N C:GLY134 4.8 0.9 1.0
CB B:ASP122 4.9 0.2 1.0

Calcium binding site 3 out of 8 in 6qxf

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Calcium binding site 3 out of 8 in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca501

b:0.5
occ:1.00
 OE1 C:GLU128 2.6 0.9 1.0
OE2 C:GLU128 2.6 0.8 1.0
OD1 C:ASP122 2.6 1.0 1.0
O B:ALA132 2.7 82.6 1.0
O C:GLU123 2.8 0.8 1.0
CD C:GLU128 2.9 0.8 1.0
CG C:ASP122 3.8 0.5 1.0
C B:ALA132 3.9 98.5 1.0
C C:GLU123 3.9 0.1 1.0
OE2 C:GLU123 4.0 0.5 1.0
OD2 C:ASP122 4.3 0.6 1.0
O B:LEU133 4.4 0.9 1.0
CG C:GLU128 4.5 0.2 1.0
C B:LEU133 4.5 86.5 1.0
N C:GLU123 4.6 0.0 1.0
CD C:GLU123 4.6 0.0 1.0
CA C:ILE124 4.7 96.7 1.0
CA B:LEU133 4.7 55.0 1.0
N C:ILE124 4.7 88.5 1.0
N B:LEU133 4.8 48.5 1.0
CA B:ALA132 4.8 0.5 1.0
CA C:GLU123 4.9 0.4 1.0
CG C:GLU123 4.9 0.2 1.0
CB C:ASP122 4.9 0.0 1.0
N B:GLY134 4.9 0.3 1.0

Calcium binding site 4 out of 8 in 6qxf

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Calcium binding site 4 out of 8 in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca501

b:0.9
occ:1.00
 OE2 D:GLU128 2.5 0.2 1.0
OD1 D:ASP122 2.6 0.8 1.0
O D:GLU123 2.6 0.5 1.0
OE1 D:GLU128 2.7 0.9 1.0
O A:ALA132 2.8 0.5 1.0
CD D:GLU128 3.0 1.0 1.0
CG D:ASP122 3.7 0.8 1.0
C D:GLU123 3.7 0.7 1.0
O A:LEU133 3.9 0.3 1.0
C A:ALA132 4.0 0.1 1.0
C A:LEU133 4.2 0.4 1.0
OD2 D:ASP122 4.2 0.3 1.0
N D:GLU123 4.3 0.2 1.0
CA A:LEU133 4.4 0.7 1.0
CG D:GLU128 4.5 0.4 1.0
OE2 D:GLU123 4.5 0.8 1.0
CG D:GLU123 4.5 0.6 1.0
CA D:GLU123 4.6 0.5 1.0
N D:ILE124 4.7 0.5 1.0
N A:LEU133 4.7 0.5 1.0
CA D:ILE124 4.8 0.1 1.0
N A:GLY134 4.8 0.8 1.0
CD D:GLU123 4.8 0.5 1.0
CB D:ASP122 4.9 0.3 1.0

Calcium binding site 5 out of 8 in 6qxf

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Calcium binding site 5 out of 8 in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca501

b:0.5
occ:1.00
 OE1 E:GLU128 2.6 0.8 1.0
OE2 E:GLU128 2.6 0.7 1.0
OD1 E:ASP122 2.6 0.7 1.0
O H:ALA132 2.6 74.9 1.0
O E:GLU123 2.8 0.4 1.0
CD E:GLU128 2.9 0.6 1.0
CG E:ASP122 3.8 0.2 1.0
C H:ALA132 3.8 90.8 1.0
C E:GLU123 3.9 0.6 1.0
OE2 E:GLU123 4.0 0.3 1.0
OD2 E:ASP122 4.3 0.3 1.0
O H:LEU133 4.4 0.9 1.0
C H:LEU133 4.5 86.5 1.0
CG E:GLU128 4.5 0.0 1.0
N E:GLU123 4.6 0.5 1.0
CA H:LEU133 4.6 55.0 1.0
CD E:GLU123 4.6 0.9 1.0
CA E:ILE124 4.7 0.6 1.0
N H:LEU133 4.7 48.4 1.0
N E:ILE124 4.7 0.4 1.0
CA H:ALA132 4.8 0.9 1.0
CA E:GLU123 4.9 0.9 1.0
CG E:GLU123 4.9 0.1 1.0
CB E:ASP122 4.9 0.7 1.0
N H:GLY134 5.0 0.9 1.0

Calcium binding site 6 out of 8 in 6qxf

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Calcium binding site 6 out of 8 in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca501

b:0.9
occ:1.00
 OE2 F:GLU128 2.5 0.4 1.0
OD1 F:ASP122 2.6 0.9 1.0
O F:GLU123 2.6 0.1 1.0
OE1 F:GLU128 2.7 0.1 1.0
O G:ALA132 2.8 0.1 1.0
CD F:GLU128 3.0 0.1 1.0
CG F:ASP122 3.7 0.9 1.0
C F:GLU123 3.7 0.4 1.0
C G:ALA132 4.0 0.8 1.0
O G:LEU133 4.1 0.8 1.0
OD2 F:ASP122 4.2 0.4 1.0
N F:GLU123 4.3 0.8 1.0
C G:LEU133 4.3 0.8 1.0
CA G:LEU133 4.5 0.1 1.0
CG F:GLU128 4.5 0.6 1.0
OE2 F:GLU123 4.5 0.3 1.0
CG F:GLU123 4.5 0.1 1.0
CA F:GLU123 4.6 0.1 1.0
N F:ILE124 4.7 0.7 1.0
N G:LEU133 4.8 0.9 1.0
CA F:ILE124 4.8 0.3 1.0
CD F:GLU123 4.8 0.1 1.0
N G:GLY134 4.9 0.3 1.0
CB F:ASP122 4.9 0.4 1.0

Calcium binding site 7 out of 8 in 6qxf

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Calcium binding site 7 out of 8 in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca501

b:0.5
occ:1.00
 OE1 G:GLU128 2.6 0.8 1.0
OE2 G:GLU128 2.6 0.7 1.0
OD1 G:ASP122 2.6 0.9 1.0
O F:ALA132 2.6 0.5 1.0
O G:GLU123 2.8 0.3 1.0
CD G:GLU128 2.9 0.7 1.0
CG G:ASP122 3.8 0.4 1.0
C F:ALA132 3.9 0.4 1.0
C G:GLU123 3.9 0.5 1.0
OE2 G:GLU123 4.0 0.8 1.0
OD2 G:ASP122 4.3 0.5 1.0
CG G:GLU128 4.5 0.1 1.0
O F:LEU133 4.5 0.9 1.0
C F:LEU133 4.5 97.5 1.0
N G:GLU123 4.6 0.5 1.0
CD G:GLU123 4.6 0.3 1.0
CA G:ILE124 4.7 0.1 1.0
CA F:LEU133 4.7 66.0 1.0
N G:ILE124 4.7 1.0 1.0
N F:LEU133 4.8 59.4 1.0
CA F:ALA132 4.8 0.5 1.0
CA G:GLU123 4.9 0.9 1.0
CG G:GLU123 4.9 0.5 1.0
CB G:ASP122 4.9 0.9 1.0

Calcium binding site 8 out of 8 in 6qxf

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Calcium binding site 8 out of 8 in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Ca501

b:0.9
occ:1.00
 OE2 H:GLU128 2.5 0.6 1.0
OD1 H:ASP122 2.6 0.4 1.0
O H:GLU123 2.6 0.0 1.0
OE1 H:GLU128 2.7 0.2 1.0
O E:ALA132 2.8 0.7 1.0
CD H:GLU128 3.0 0.3 1.0
CG H:ASP122 3.7 0.5 1.0
C H:GLU123 3.7 0.3 1.0
C E:ALA132 4.0 0.3 1.0
O E:LEU133 4.1 0.9 1.0
OD2 H:ASP122 4.2 0.9 1.0
C E:LEU133 4.2 1.0 1.0
N H:GLU123 4.3 0.8 1.0
CA E:LEU133 4.5 0.3 1.0
CG H:GLU128 4.5 0.7 1.0
OE2 H:GLU123 4.5 0.8 1.0
CG H:GLU123 4.5 0.6 1.0
CA H:GLU123 4.6 0.1 1.0
N H:ILE124 4.7 0.3 1.0
N E:LEU133 4.7 0.1 1.0
CA H:ILE124 4.8 1.0 1.0
N E:GLY134 4.8 0.4 1.0
CD H:GLU123 4.8 0.6 1.0
CB H:ASP122 4.9 0.9 1.0

Reference:

M.Wilkinson, G.Drabavicius, A.Silanskas, G.Gasiunas, V.Siksnys, D.B.Wigley. Structure of the Dna-Bound Spacer Capture Complex of A Type II Crispr-Cas System. Mol.Cell V. 75 90 2019.
ISSN: ISSN 1097-2765
PubMed: 31080012
DOI: 10.1016/J.MOLCEL.2019.04.020
Page generated: Tue Jul 16 14:05:49 2024

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