Atomistry » Calcium » PDB 6qph-6r3m » 6qxf
Atomistry »
  Calcium »
    PDB 6qph-6r3m »
      6qxf »

Calcium in PDB 6qxf: CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System

Calcium Binding Sites:

The binding sites of Calcium atom in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System (pdb code 6qxf). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System, PDB code: 6qxf:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 6qxf

Go back to Calcium Binding Sites List in 6qxf
Calcium binding site 1 out of 8 in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:0.5
occ:1.00
 OE1 A:GLU128 2.6 0.0 1.0
OE2 A:GLU128 2.6 1.0 1.0
OD1 A:ASP122 2.6 0.1 1.0
O D:ALA132 2.7 0.2 1.0
O A:GLU123 2.8 0.2 1.0
CD A:GLU128 2.9 0.9 1.0
CG A:ASP122 3.8 0.6 1.0
C A:GLU123 3.9 0.4 1.0
C D:ALA132 3.9 0.1 1.0
OE2 A:GLU123 4.0 0.6 1.0
OD2 A:ASP122 4.3 0.7 1.0
O D:LEU133 4.3 0.5 1.0
C D:LEU133 4.4 0.1 1.0
CG A:GLU128 4.5 0.3 1.0
N A:GLU123 4.6 0.4 1.0
CD A:GLU123 4.6 0.2 1.0
CA A:ILE124 4.7 97.7 1.0
CA D:LEU133 4.7 75.6 1.0
N A:ILE124 4.7 89.5 1.0
N D:LEU133 4.8 69.0 1.0
CA D:ALA132 4.8 0.1 1.0
CA A:GLU123 4.9 0.8 1.0
N D:GLY134 4.9 0.2 1.0
CG A:GLU123 4.9 0.4 1.0
CB A:ASP122 4.9 0.1 1.0

Calcium binding site 2 out of 8 in 6qxf

Go back to Calcium Binding Sites List in 6qxf
Calcium binding site 2 out of 8 in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca501

b:0.9
occ:1.00
 OE2 B:GLU128 2.5 0.5 1.0
OD1 B:ASP122 2.6 0.7 1.0
O B:GLU123 2.6 0.4 1.0
OE1 B:GLU128 2.7 0.2 1.0
O C:ALA132 2.8 0.3 1.0
CD B:GLU128 3.0 0.2 1.0
CG B:ASP122 3.7 0.7 1.0
C B:GLU123 3.7 0.7 1.0
O C:LEU133 4.0 99.5 1.0
C C:ALA132 4.0 0.9 1.0
C C:LEU133 4.2 0.3 1.0
OD2 B:ASP122 4.2 0.1 1.0
N B:GLU123 4.3 0.1 1.0
CA C:LEU133 4.4 0.6 1.0
CG B:GLU128 4.5 0.7 1.0
OE2 B:GLU123 4.5 0.1 1.0
CG B:GLU123 4.5 0.9 1.0
CA B:GLU123 4.6 0.4 1.0
N B:ILE124 4.7 0.7 1.0
N C:LEU133 4.7 0.4 1.0
CA B:ILE124 4.8 0.3 1.0
CD B:GLU123 4.8 0.9 1.0
N C:GLY134 4.8 0.9 1.0
CB B:ASP122 4.9 0.2 1.0

Calcium binding site 3 out of 8 in 6qxf

Go back to Calcium Binding Sites List in 6qxf
Calcium binding site 3 out of 8 in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca501

b:0.5
occ:1.00
 OE1 C:GLU128 2.6 0.9 1.0
OE2 C:GLU128 2.6 0.8 1.0
OD1 C:ASP122 2.6 1.0 1.0
O B:ALA132 2.7 82.6 1.0
O C:GLU123 2.8 0.8 1.0
CD C:GLU128 2.9 0.8 1.0
CG C:ASP122 3.8 0.5 1.0
C B:ALA132 3.9 98.5 1.0
C C:GLU123 3.9 0.1 1.0
OE2 C:GLU123 4.0 0.5 1.0
OD2 C:ASP122 4.3 0.6 1.0
O B:LEU133 4.4 0.9 1.0
CG C:GLU128 4.5 0.2 1.0
C B:LEU133 4.5 86.5 1.0
N C:GLU123 4.6 0.0 1.0
CD C:GLU123 4.6 0.0 1.0
CA C:ILE124 4.7 96.7 1.0
CA B:LEU133 4.7 55.0 1.0
N C:ILE124 4.7 88.5 1.0
N B:LEU133 4.8 48.5 1.0
CA B:ALA132 4.8 0.5 1.0
CA C:GLU123 4.9 0.4 1.0
CG C:GLU123 4.9 0.2 1.0
CB C:ASP122 4.9 0.0 1.0
N B:GLY134 4.9 0.3 1.0

Calcium binding site 4 out of 8 in 6qxf

Go back to Calcium Binding Sites List in 6qxf
Calcium binding site 4 out of 8 in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca501

b:0.9
occ:1.00
 OE2 D:GLU128 2.5 0.2 1.0
OD1 D:ASP122 2.6 0.8 1.0
O D:GLU123 2.6 0.5 1.0
OE1 D:GLU128 2.7 0.9 1.0
O A:ALA132 2.8 0.5 1.0
CD D:GLU128 3.0 1.0 1.0
CG D:ASP122 3.7 0.8 1.0
C D:GLU123 3.7 0.7 1.0
O A:LEU133 3.9 0.3 1.0
C A:ALA132 4.0 0.1 1.0
C A:LEU133 4.2 0.4 1.0
OD2 D:ASP122 4.2 0.3 1.0
N D:GLU123 4.3 0.2 1.0
CA A:LEU133 4.4 0.7 1.0
CG D:GLU128 4.5 0.4 1.0
OE2 D:GLU123 4.5 0.8 1.0
CG D:GLU123 4.5 0.6 1.0
CA D:GLU123 4.6 0.5 1.0
N D:ILE124 4.7 0.5 1.0
N A:LEU133 4.7 0.5 1.0
CA D:ILE124 4.8 0.1 1.0
N A:GLY134 4.8 0.8 1.0
CD D:GLU123 4.8 0.5 1.0
CB D:ASP122 4.9 0.3 1.0

Calcium binding site 5 out of 8 in 6qxf

Go back to Calcium Binding Sites List in 6qxf
Calcium binding site 5 out of 8 in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca501

b:0.5
occ:1.00
 OE1 E:GLU128 2.6 0.8 1.0
OE2 E:GLU128 2.6 0.7 1.0
OD1 E:ASP122 2.6 0.7 1.0
O H:ALA132 2.6 74.9 1.0
O E:GLU123 2.8 0.4 1.0
CD E:GLU128 2.9 0.6 1.0
CG E:ASP122 3.8 0.2 1.0
C H:ALA132 3.8 90.8 1.0
C E:GLU123 3.9 0.6 1.0
OE2 E:GLU123 4.0 0.3 1.0
OD2 E:ASP122 4.3 0.3 1.0
O H:LEU133 4.4 0.9 1.0
C H:LEU133 4.5 86.5 1.0
CG E:GLU128 4.5 0.0 1.0
N E:GLU123 4.6 0.5 1.0
CA H:LEU133 4.6 55.0 1.0
CD E:GLU123 4.6 0.9 1.0
CA E:ILE124 4.7 0.6 1.0
N H:LEU133 4.7 48.4 1.0
N E:ILE124 4.7 0.4 1.0
CA H:ALA132 4.8 0.9 1.0
CA E:GLU123 4.9 0.9 1.0
CG E:GLU123 4.9 0.1 1.0
CB E:ASP122 4.9 0.7 1.0
N H:GLY134 5.0 0.9 1.0

Calcium binding site 6 out of 8 in 6qxf

Go back to Calcium Binding Sites List in 6qxf
Calcium binding site 6 out of 8 in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca501

b:0.9
occ:1.00
 OE2 F:GLU128 2.5 0.4 1.0
OD1 F:ASP122 2.6 0.9 1.0
O F:GLU123 2.6 0.1 1.0
OE1 F:GLU128 2.7 0.1 1.0
O G:ALA132 2.8 0.1 1.0
CD F:GLU128 3.0 0.1 1.0
CG F:ASP122 3.7 0.9 1.0
C F:GLU123 3.7 0.4 1.0
C G:ALA132 4.0 0.8 1.0
O G:LEU133 4.1 0.8 1.0
OD2 F:ASP122 4.2 0.4 1.0
N F:GLU123 4.3 0.8 1.0
C G:LEU133 4.3 0.8 1.0
CA G:LEU133 4.5 0.1 1.0
CG F:GLU128 4.5 0.6 1.0
OE2 F:GLU123 4.5 0.3 1.0
CG F:GLU123 4.5 0.1 1.0
CA F:GLU123 4.6 0.1 1.0
N F:ILE124 4.7 0.7 1.0
N G:LEU133 4.8 0.9 1.0
CA F:ILE124 4.8 0.3 1.0
CD F:GLU123 4.8 0.1 1.0
N G:GLY134 4.9 0.3 1.0
CB F:ASP122 4.9 0.4 1.0

Calcium binding site 7 out of 8 in 6qxf

Go back to Calcium Binding Sites List in 6qxf
Calcium binding site 7 out of 8 in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca501

b:0.5
occ:1.00
 OE1 G:GLU128 2.6 0.8 1.0
OE2 G:GLU128 2.6 0.7 1.0
OD1 G:ASP122 2.6 0.9 1.0
O F:ALA132 2.6 0.5 1.0
O G:GLU123 2.8 0.3 1.0
CD G:GLU128 2.9 0.7 1.0
CG G:ASP122 3.8 0.4 1.0
C F:ALA132 3.9 0.4 1.0
C G:GLU123 3.9 0.5 1.0
OE2 G:GLU123 4.0 0.8 1.0
OD2 G:ASP122 4.3 0.5 1.0
CG G:GLU128 4.5 0.1 1.0
O F:LEU133 4.5 0.9 1.0
C F:LEU133 4.5 97.5 1.0
N G:GLU123 4.6 0.5 1.0
CD G:GLU123 4.6 0.3 1.0
CA G:ILE124 4.7 0.1 1.0
CA F:LEU133 4.7 66.0 1.0
N G:ILE124 4.7 1.0 1.0
N F:LEU133 4.8 59.4 1.0
CA F:ALA132 4.8 0.5 1.0
CA G:GLU123 4.9 0.9 1.0
CG G:GLU123 4.9 0.5 1.0
CB G:ASP122 4.9 0.9 1.0

Calcium binding site 8 out of 8 in 6qxf

Go back to Calcium Binding Sites List in 6qxf
Calcium binding site 8 out of 8 in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Ca501

b:0.9
occ:1.00
 OE2 H:GLU128 2.5 0.6 1.0
OD1 H:ASP122 2.6 0.4 1.0
O H:GLU123 2.6 0.0 1.0
OE1 H:GLU128 2.7 0.2 1.0
O E:ALA132 2.8 0.7 1.0
CD H:GLU128 3.0 0.3 1.0
CG H:ASP122 3.7 0.5 1.0
C H:GLU123 3.7 0.3 1.0
C E:ALA132 4.0 0.3 1.0
O E:LEU133 4.1 0.9 1.0
OD2 H:ASP122 4.2 0.9 1.0
C E:LEU133 4.2 1.0 1.0
N H:GLU123 4.3 0.8 1.0
CA E:LEU133 4.5 0.3 1.0
CG H:GLU128 4.5 0.7 1.0
OE2 H:GLU123 4.5 0.8 1.0
CG H:GLU123 4.5 0.6 1.0
CA H:GLU123 4.6 0.1 1.0
N H:ILE124 4.7 0.3 1.0
N E:LEU133 4.7 0.1 1.0
CA H:ILE124 4.8 1.0 1.0
N E:GLY134 4.8 0.4 1.0
CD H:GLU123 4.8 0.6 1.0
CB H:ASP122 4.9 0.9 1.0

Reference:

M.Wilkinson, G.Drabavicius, A.Silanskas, G.Gasiunas, V.Siksnys, D.B.Wigley. Structure of the Dna-Bound Spacer Capture Complex of A Type II Crispr-Cas System. Mol.Cell V. 75 90 2019.
ISSN: ISSN 1097-2765
PubMed: 31080012
DOI: 10.1016/J.MOLCEL.2019.04.020
Page generated: Tue Jul 16 14:05:49 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy