Calcium in PDB 6qxf: CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System
Calcium Binding Sites:
The binding sites of Calcium atom in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System
(pdb code 6qxf). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the
CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System, PDB code: 6qxf:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Calcium binding site 1 out
of 8 in 6qxf
Go back to
Calcium Binding Sites List in 6qxf
Calcium binding site 1 out
of 8 in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca501
b:0.5
occ:1.00
|
OE1
|
A:GLU128
|
2.6
|
0.0
|
1.0
|
OE2
|
A:GLU128
|
2.6
|
1.0
|
1.0
|
OD1
|
A:ASP122
|
2.6
|
0.1
|
1.0
|
O
|
D:ALA132
|
2.7
|
0.2
|
1.0
|
O
|
A:GLU123
|
2.8
|
0.2
|
1.0
|
CD
|
A:GLU128
|
2.9
|
0.9
|
1.0
|
CG
|
A:ASP122
|
3.8
|
0.6
|
1.0
|
C
|
A:GLU123
|
3.9
|
0.4
|
1.0
|
C
|
D:ALA132
|
3.9
|
0.1
|
1.0
|
OE2
|
A:GLU123
|
4.0
|
0.6
|
1.0
|
OD2
|
A:ASP122
|
4.3
|
0.7
|
1.0
|
O
|
D:LEU133
|
4.3
|
0.5
|
1.0
|
C
|
D:LEU133
|
4.4
|
0.1
|
1.0
|
CG
|
A:GLU128
|
4.5
|
0.3
|
1.0
|
N
|
A:GLU123
|
4.6
|
0.4
|
1.0
|
CD
|
A:GLU123
|
4.6
|
0.2
|
1.0
|
CA
|
A:ILE124
|
4.7
|
97.7
|
1.0
|
CA
|
D:LEU133
|
4.7
|
75.6
|
1.0
|
N
|
A:ILE124
|
4.7
|
89.5
|
1.0
|
N
|
D:LEU133
|
4.8
|
69.0
|
1.0
|
CA
|
D:ALA132
|
4.8
|
0.1
|
1.0
|
CA
|
A:GLU123
|
4.9
|
0.8
|
1.0
|
N
|
D:GLY134
|
4.9
|
0.2
|
1.0
|
CG
|
A:GLU123
|
4.9
|
0.4
|
1.0
|
CB
|
A:ASP122
|
4.9
|
0.1
|
1.0
|
|
Calcium binding site 2 out
of 8 in 6qxf
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Calcium Binding Sites List in 6qxf
Calcium binding site 2 out
of 8 in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca501
b:0.9
occ:1.00
|
OE2
|
B:GLU128
|
2.5
|
0.5
|
1.0
|
OD1
|
B:ASP122
|
2.6
|
0.7
|
1.0
|
O
|
B:GLU123
|
2.6
|
0.4
|
1.0
|
OE1
|
B:GLU128
|
2.7
|
0.2
|
1.0
|
O
|
C:ALA132
|
2.8
|
0.3
|
1.0
|
CD
|
B:GLU128
|
3.0
|
0.2
|
1.0
|
CG
|
B:ASP122
|
3.7
|
0.7
|
1.0
|
C
|
B:GLU123
|
3.7
|
0.7
|
1.0
|
O
|
C:LEU133
|
4.0
|
99.5
|
1.0
|
C
|
C:ALA132
|
4.0
|
0.9
|
1.0
|
C
|
C:LEU133
|
4.2
|
0.3
|
1.0
|
OD2
|
B:ASP122
|
4.2
|
0.1
|
1.0
|
N
|
B:GLU123
|
4.3
|
0.1
|
1.0
|
CA
|
C:LEU133
|
4.4
|
0.6
|
1.0
|
CG
|
B:GLU128
|
4.5
|
0.7
|
1.0
|
OE2
|
B:GLU123
|
4.5
|
0.1
|
1.0
|
CG
|
B:GLU123
|
4.5
|
0.9
|
1.0
|
CA
|
B:GLU123
|
4.6
|
0.4
|
1.0
|
N
|
B:ILE124
|
4.7
|
0.7
|
1.0
|
N
|
C:LEU133
|
4.7
|
0.4
|
1.0
|
CA
|
B:ILE124
|
4.8
|
0.3
|
1.0
|
CD
|
B:GLU123
|
4.8
|
0.9
|
1.0
|
N
|
C:GLY134
|
4.8
|
0.9
|
1.0
|
CB
|
B:ASP122
|
4.9
|
0.2
|
1.0
|
|
Calcium binding site 3 out
of 8 in 6qxf
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Calcium Binding Sites List in 6qxf
Calcium binding site 3 out
of 8 in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca501
b:0.5
occ:1.00
|
OE1
|
C:GLU128
|
2.6
|
0.9
|
1.0
|
OE2
|
C:GLU128
|
2.6
|
0.8
|
1.0
|
OD1
|
C:ASP122
|
2.6
|
1.0
|
1.0
|
O
|
B:ALA132
|
2.7
|
82.6
|
1.0
|
O
|
C:GLU123
|
2.8
|
0.8
|
1.0
|
CD
|
C:GLU128
|
2.9
|
0.8
|
1.0
|
CG
|
C:ASP122
|
3.8
|
0.5
|
1.0
|
C
|
B:ALA132
|
3.9
|
98.5
|
1.0
|
C
|
C:GLU123
|
3.9
|
0.1
|
1.0
|
OE2
|
C:GLU123
|
4.0
|
0.5
|
1.0
|
OD2
|
C:ASP122
|
4.3
|
0.6
|
1.0
|
O
|
B:LEU133
|
4.4
|
0.9
|
1.0
|
CG
|
C:GLU128
|
4.5
|
0.2
|
1.0
|
C
|
B:LEU133
|
4.5
|
86.5
|
1.0
|
N
|
C:GLU123
|
4.6
|
0.0
|
1.0
|
CD
|
C:GLU123
|
4.6
|
0.0
|
1.0
|
CA
|
C:ILE124
|
4.7
|
96.7
|
1.0
|
CA
|
B:LEU133
|
4.7
|
55.0
|
1.0
|
N
|
C:ILE124
|
4.7
|
88.5
|
1.0
|
N
|
B:LEU133
|
4.8
|
48.5
|
1.0
|
CA
|
B:ALA132
|
4.8
|
0.5
|
1.0
|
CA
|
C:GLU123
|
4.9
|
0.4
|
1.0
|
CG
|
C:GLU123
|
4.9
|
0.2
|
1.0
|
CB
|
C:ASP122
|
4.9
|
0.0
|
1.0
|
N
|
B:GLY134
|
4.9
|
0.3
|
1.0
|
|
Calcium binding site 4 out
of 8 in 6qxf
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Calcium Binding Sites List in 6qxf
Calcium binding site 4 out
of 8 in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca501
b:0.9
occ:1.00
|
OE2
|
D:GLU128
|
2.5
|
0.2
|
1.0
|
OD1
|
D:ASP122
|
2.6
|
0.8
|
1.0
|
O
|
D:GLU123
|
2.6
|
0.5
|
1.0
|
OE1
|
D:GLU128
|
2.7
|
0.9
|
1.0
|
O
|
A:ALA132
|
2.8
|
0.5
|
1.0
|
CD
|
D:GLU128
|
3.0
|
1.0
|
1.0
|
CG
|
D:ASP122
|
3.7
|
0.8
|
1.0
|
C
|
D:GLU123
|
3.7
|
0.7
|
1.0
|
O
|
A:LEU133
|
3.9
|
0.3
|
1.0
|
C
|
A:ALA132
|
4.0
|
0.1
|
1.0
|
C
|
A:LEU133
|
4.2
|
0.4
|
1.0
|
OD2
|
D:ASP122
|
4.2
|
0.3
|
1.0
|
N
|
D:GLU123
|
4.3
|
0.2
|
1.0
|
CA
|
A:LEU133
|
4.4
|
0.7
|
1.0
|
CG
|
D:GLU128
|
4.5
|
0.4
|
1.0
|
OE2
|
D:GLU123
|
4.5
|
0.8
|
1.0
|
CG
|
D:GLU123
|
4.5
|
0.6
|
1.0
|
CA
|
D:GLU123
|
4.6
|
0.5
|
1.0
|
N
|
D:ILE124
|
4.7
|
0.5
|
1.0
|
N
|
A:LEU133
|
4.7
|
0.5
|
1.0
|
CA
|
D:ILE124
|
4.8
|
0.1
|
1.0
|
N
|
A:GLY134
|
4.8
|
0.8
|
1.0
|
CD
|
D:GLU123
|
4.8
|
0.5
|
1.0
|
CB
|
D:ASP122
|
4.9
|
0.3
|
1.0
|
|
Calcium binding site 5 out
of 8 in 6qxf
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Calcium Binding Sites List in 6qxf
Calcium binding site 5 out
of 8 in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca501
b:0.5
occ:1.00
|
OE1
|
E:GLU128
|
2.6
|
0.8
|
1.0
|
OE2
|
E:GLU128
|
2.6
|
0.7
|
1.0
|
OD1
|
E:ASP122
|
2.6
|
0.7
|
1.0
|
O
|
H:ALA132
|
2.6
|
74.9
|
1.0
|
O
|
E:GLU123
|
2.8
|
0.4
|
1.0
|
CD
|
E:GLU128
|
2.9
|
0.6
|
1.0
|
CG
|
E:ASP122
|
3.8
|
0.2
|
1.0
|
C
|
H:ALA132
|
3.8
|
90.8
|
1.0
|
C
|
E:GLU123
|
3.9
|
0.6
|
1.0
|
OE2
|
E:GLU123
|
4.0
|
0.3
|
1.0
|
OD2
|
E:ASP122
|
4.3
|
0.3
|
1.0
|
O
|
H:LEU133
|
4.4
|
0.9
|
1.0
|
C
|
H:LEU133
|
4.5
|
86.5
|
1.0
|
CG
|
E:GLU128
|
4.5
|
0.0
|
1.0
|
N
|
E:GLU123
|
4.6
|
0.5
|
1.0
|
CA
|
H:LEU133
|
4.6
|
55.0
|
1.0
|
CD
|
E:GLU123
|
4.6
|
0.9
|
1.0
|
CA
|
E:ILE124
|
4.7
|
0.6
|
1.0
|
N
|
H:LEU133
|
4.7
|
48.4
|
1.0
|
N
|
E:ILE124
|
4.7
|
0.4
|
1.0
|
CA
|
H:ALA132
|
4.8
|
0.9
|
1.0
|
CA
|
E:GLU123
|
4.9
|
0.9
|
1.0
|
CG
|
E:GLU123
|
4.9
|
0.1
|
1.0
|
CB
|
E:ASP122
|
4.9
|
0.7
|
1.0
|
N
|
H:GLY134
|
5.0
|
0.9
|
1.0
|
|
Calcium binding site 6 out
of 8 in 6qxf
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Calcium Binding Sites List in 6qxf
Calcium binding site 6 out
of 8 in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca501
b:0.9
occ:1.00
|
OE2
|
F:GLU128
|
2.5
|
0.4
|
1.0
|
OD1
|
F:ASP122
|
2.6
|
0.9
|
1.0
|
O
|
F:GLU123
|
2.6
|
0.1
|
1.0
|
OE1
|
F:GLU128
|
2.7
|
0.1
|
1.0
|
O
|
G:ALA132
|
2.8
|
0.1
|
1.0
|
CD
|
F:GLU128
|
3.0
|
0.1
|
1.0
|
CG
|
F:ASP122
|
3.7
|
0.9
|
1.0
|
C
|
F:GLU123
|
3.7
|
0.4
|
1.0
|
C
|
G:ALA132
|
4.0
|
0.8
|
1.0
|
O
|
G:LEU133
|
4.1
|
0.8
|
1.0
|
OD2
|
F:ASP122
|
4.2
|
0.4
|
1.0
|
N
|
F:GLU123
|
4.3
|
0.8
|
1.0
|
C
|
G:LEU133
|
4.3
|
0.8
|
1.0
|
CA
|
G:LEU133
|
4.5
|
0.1
|
1.0
|
CG
|
F:GLU128
|
4.5
|
0.6
|
1.0
|
OE2
|
F:GLU123
|
4.5
|
0.3
|
1.0
|
CG
|
F:GLU123
|
4.5
|
0.1
|
1.0
|
CA
|
F:GLU123
|
4.6
|
0.1
|
1.0
|
N
|
F:ILE124
|
4.7
|
0.7
|
1.0
|
N
|
G:LEU133
|
4.8
|
0.9
|
1.0
|
CA
|
F:ILE124
|
4.8
|
0.3
|
1.0
|
CD
|
F:GLU123
|
4.8
|
0.1
|
1.0
|
N
|
G:GLY134
|
4.9
|
0.3
|
1.0
|
CB
|
F:ASP122
|
4.9
|
0.4
|
1.0
|
|
Calcium binding site 7 out
of 8 in 6qxf
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Calcium Binding Sites List in 6qxf
Calcium binding site 7 out
of 8 in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Ca501
b:0.5
occ:1.00
|
OE1
|
G:GLU128
|
2.6
|
0.8
|
1.0
|
OE2
|
G:GLU128
|
2.6
|
0.7
|
1.0
|
OD1
|
G:ASP122
|
2.6
|
0.9
|
1.0
|
O
|
F:ALA132
|
2.6
|
0.5
|
1.0
|
O
|
G:GLU123
|
2.8
|
0.3
|
1.0
|
CD
|
G:GLU128
|
2.9
|
0.7
|
1.0
|
CG
|
G:ASP122
|
3.8
|
0.4
|
1.0
|
C
|
F:ALA132
|
3.9
|
0.4
|
1.0
|
C
|
G:GLU123
|
3.9
|
0.5
|
1.0
|
OE2
|
G:GLU123
|
4.0
|
0.8
|
1.0
|
OD2
|
G:ASP122
|
4.3
|
0.5
|
1.0
|
CG
|
G:GLU128
|
4.5
|
0.1
|
1.0
|
O
|
F:LEU133
|
4.5
|
0.9
|
1.0
|
C
|
F:LEU133
|
4.5
|
97.5
|
1.0
|
N
|
G:GLU123
|
4.6
|
0.5
|
1.0
|
CD
|
G:GLU123
|
4.6
|
0.3
|
1.0
|
CA
|
G:ILE124
|
4.7
|
0.1
|
1.0
|
CA
|
F:LEU133
|
4.7
|
66.0
|
1.0
|
N
|
G:ILE124
|
4.7
|
1.0
|
1.0
|
N
|
F:LEU133
|
4.8
|
59.4
|
1.0
|
CA
|
F:ALA132
|
4.8
|
0.5
|
1.0
|
CA
|
G:GLU123
|
4.9
|
0.9
|
1.0
|
CG
|
G:GLU123
|
4.9
|
0.5
|
1.0
|
CB
|
G:ASP122
|
4.9
|
0.9
|
1.0
|
|
Calcium binding site 8 out
of 8 in 6qxf
Go back to
Calcium Binding Sites List in 6qxf
Calcium binding site 8 out
of 8 in the CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of CAS1-CAS2-CSN2-Dna Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Ca501
b:0.9
occ:1.00
|
OE2
|
H:GLU128
|
2.5
|
0.6
|
1.0
|
OD1
|
H:ASP122
|
2.6
|
0.4
|
1.0
|
O
|
H:GLU123
|
2.6
|
0.0
|
1.0
|
OE1
|
H:GLU128
|
2.7
|
0.2
|
1.0
|
O
|
E:ALA132
|
2.8
|
0.7
|
1.0
|
CD
|
H:GLU128
|
3.0
|
0.3
|
1.0
|
CG
|
H:ASP122
|
3.7
|
0.5
|
1.0
|
C
|
H:GLU123
|
3.7
|
0.3
|
1.0
|
C
|
E:ALA132
|
4.0
|
0.3
|
1.0
|
O
|
E:LEU133
|
4.1
|
0.9
|
1.0
|
OD2
|
H:ASP122
|
4.2
|
0.9
|
1.0
|
C
|
E:LEU133
|
4.2
|
1.0
|
1.0
|
N
|
H:GLU123
|
4.3
|
0.8
|
1.0
|
CA
|
E:LEU133
|
4.5
|
0.3
|
1.0
|
CG
|
H:GLU128
|
4.5
|
0.7
|
1.0
|
OE2
|
H:GLU123
|
4.5
|
0.8
|
1.0
|
CG
|
H:GLU123
|
4.5
|
0.6
|
1.0
|
CA
|
H:GLU123
|
4.6
|
0.1
|
1.0
|
N
|
H:ILE124
|
4.7
|
0.3
|
1.0
|
N
|
E:LEU133
|
4.7
|
0.1
|
1.0
|
CA
|
H:ILE124
|
4.8
|
1.0
|
1.0
|
N
|
E:GLY134
|
4.8
|
0.4
|
1.0
|
CD
|
H:GLU123
|
4.8
|
0.6
|
1.0
|
CB
|
H:ASP122
|
4.9
|
0.9
|
1.0
|
|
Reference:
M.Wilkinson,
G.Drabavicius,
A.Silanskas,
G.Gasiunas,
V.Siksnys,
D.B.Wigley.
Structure of the Dna-Bound Spacer Capture Complex of A Type II Crispr-Cas System. Mol.Cell V. 75 90 2019.
ISSN: ISSN 1097-2765
PubMed: 31080012
DOI: 10.1016/J.MOLCEL.2019.04.020
Page generated: Tue Jul 16 14:05:49 2024
|