Calcium in PDB 6qxt: CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System

Calcium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Calcium atom in the CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System (pdb code 6qxt). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 16 binding sites of Calcium where determined in the CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System, PDB code: 6qxt:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 16 in 6qxt

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Calcium binding site 1 out of 16 in the CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:0.7
occ:1.00
 O D:ALA132 2.7 0.8 1.0
O A:GLU123 2.8 95.4 1.0
C D:ALA132 3.9 0.8 1.0
C A:GLU123 3.9 95.4 1.0
O D:LEU133 4.4 0.6 1.0
C D:LEU133 4.4 0.6 1.0
N A:GLU123 4.6 95.4 1.0
CA D:LEU133 4.7 0.6 1.0
CA A:ILE124 4.7 0.0 1.0
N A:ILE124 4.7 0.0 1.0
N D:LEU133 4.8 0.6 1.0
CA D:ALA132 4.8 0.8 1.0
CA A:GLU123 4.9 95.4 1.0
N D:GLY134 4.9 0.8 1.0
CB A:ASP122 4.9 0.2 1.0

Calcium binding site 2 out of 16 in 6qxt

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Calcium binding site 2 out of 16 in the CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca502

b:0.7
occ:1.00
 O D:GLU123 2.6 0.0 1.0
O A:ALA132 2.8 0.9 1.0
C D:GLU123 3.7 0.0 1.0
O A:LEU133 4.0 0.0 1.0
C A:ALA132 4.0 0.9 1.0
C A:LEU133 4.2 0.0 1.0
N D:GLU123 4.3 0.0 1.0
CA A:LEU133 4.3 0.0 1.0
CA D:GLU123 4.6 0.0 1.0
N D:ILE124 4.7 0.8 1.0
N A:LEU133 4.7 0.0 1.0
CA D:ILE124 4.8 0.8 1.0
N A:GLY134 4.8 0.3 1.0
CB D:ASP122 5.0 0.9 1.0

Calcium binding site 3 out of 16 in 6qxt

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Calcium binding site 3 out of 16 in the CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca501

b:0.7
occ:1.00
 O B:GLU123 2.6 0.1 1.0
O C:ALA132 2.8 1.0 1.0
C B:GLU123 3.7 0.1 1.0
C C:ALA132 4.0 1.0 1.0
O C:LEU133 4.1 0.0 1.0
C C:LEU133 4.2 0.0 1.0
N B:GLU123 4.3 0.1 1.0
CA C:LEU133 4.4 0.0 1.0
CA B:GLU123 4.6 0.1 1.0
N B:ILE124 4.7 0.6 1.0
N C:LEU133 4.7 0.0 1.0
CA B:ILE124 4.8 0.6 1.0
N C:GLY134 4.8 0.3 1.0
CB B:ASP122 5.0 0.7 1.0

Calcium binding site 4 out of 16 in 6qxt

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Calcium binding site 4 out of 16 in the CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca502

b:0.7
occ:1.00
 O B:ALA132 2.7 0.9 1.0
O C:GLU123 2.8 0.3 1.0
C B:ALA132 3.9 0.9 1.0
C C:GLU123 3.9 0.3 1.0
O B:LEU133 4.4 0.6 1.0
C B:LEU133 4.5 0.6 1.0
N C:GLU123 4.6 0.3 1.0
CA C:ILE124 4.7 0.5 1.0
CA B:LEU133 4.7 0.6 1.0
N C:ILE124 4.7 0.5 1.0
N B:LEU133 4.8 0.6 1.0
CA B:ALA132 4.8 0.9 1.0
CA C:GLU123 4.9 0.3 1.0
CB C:ASP122 4.9 1.0 1.0
N B:GLY134 4.9 0.5 1.0

Calcium binding site 5 out of 16 in 6qxt

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Calcium binding site 5 out of 16 in the CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca501

b:0.7
occ:1.00
 O H:ALA132 2.6 0.2 1.0
O E:GLU123 2.8 0.2 1.0
C H:ALA132 3.8 0.2 1.0
C E:GLU123 3.9 0.2 1.0
O H:LEU133 4.4 0.5 1.0
C H:LEU133 4.5 0.5 1.0
N E:GLU123 4.6 0.2 1.0
CA H:LEU133 4.6 0.5 1.0
CA E:ILE124 4.7 0.8 1.0
N H:LEU133 4.7 0.5 1.0
N E:ILE124 4.7 0.8 1.0
CA H:ALA132 4.8 0.2 1.0
CA E:GLU123 4.9 0.2 1.0
CB E:ASP122 4.9 0.6 1.0
N H:GLY134 5.0 0.2 1.0

Calcium binding site 6 out of 16 in 6qxt

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Calcium binding site 6 out of 16 in the CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca502

b:0.7
occ:1.00
 O H:GLU123 2.6 0.6 1.0
O E:ALA132 2.8 0.7 1.0
C H:GLU123 3.7 0.6 1.0
C E:ALA132 4.0 0.7 1.0
O E:LEU133 4.1 0.2 1.0
C E:LEU133 4.2 0.2 1.0
N H:GLU123 4.3 0.6 1.0
CA E:LEU133 4.4 0.2 1.0
CA H:GLU123 4.6 0.6 1.0
N H:ILE124 4.7 0.1 1.0
N E:LEU133 4.7 0.2 1.0
CA H:ILE124 4.8 0.1 1.0
N E:GLY134 4.8 0.4 1.0
CB H:ASP122 5.0 0.8 1.0

Calcium binding site 7 out of 16 in 6qxt

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Calcium binding site 7 out of 16 in the CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca501

b:0.7
occ:1.00
 O F:GLU123 2.6 0.9 1.0
O G:ALA132 2.8 0.6 1.0
C F:GLU123 3.7 0.9 1.0
C G:ALA132 4.0 0.6 1.0
O G:LEU133 4.2 0.9 1.0
C G:LEU133 4.3 0.9 1.0
N F:GLU123 4.3 0.9 1.0
CA G:LEU133 4.5 0.9 1.0
CA F:GLU123 4.6 0.9 1.0
N F:ILE124 4.7 0.3 1.0
N G:LEU133 4.7 0.9 1.0
CA F:ILE124 4.8 0.3 1.0
N G:GLY134 4.8 1.0 1.0
CB F:ASP122 5.0 0.1 1.0

Calcium binding site 8 out of 16 in 6qxt

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Calcium binding site 8 out of 16 in the CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca502

b:0.7
occ:1.00
 O F:ALA132 2.6 0.1 1.0
O G:GLU123 2.8 0.1 1.0
C F:ALA132 3.9 0.1 1.0
C G:GLU123 3.9 0.1 1.0
O F:LEU133 4.5 0.4 1.0
C F:LEU133 4.5 0.4 1.0
N G:GLU123 4.6 0.1 1.0
CA G:ILE124 4.7 0.9 1.0
CA F:LEU133 4.7 0.4 1.0
N G:ILE124 4.7 0.9 1.0
N F:LEU133 4.7 0.4 1.0
CA F:ALA132 4.8 0.1 1.0
CA G:GLU123 4.9 0.1 1.0
CB G:ASP122 4.9 0.8 1.0

Calcium binding site 9 out of 16 in 6qxt

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Calcium binding site 9 out of 16 in the CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Ca501

b:0.7
occ:1.00
 O d:ALA132 2.7 0.7 1.0
O a:GLU123 2.8 45.5 1.0
C d:ALA132 3.9 0.7 1.0
C a:GLU123 3.9 45.5 1.0
O d:LEU133 4.4 0.2 1.0
C d:LEU133 4.4 0.2 1.0
N a:GLU123 4.6 45.5 1.0
CA d:LEU133 4.7 0.2 1.0
CA a:ILE124 4.7 76.7 1.0
N a:ILE124 4.7 76.7 1.0
N d:LEU133 4.8 0.2 1.0
CA d:ALA132 4.8 0.7 1.0
CA a:GLU123 4.9 45.5 1.0
N d:GLY134 4.9 0.2 1.0
CB a:ASP122 4.9 70.9 1.0

Calcium binding site 10 out of 16 in 6qxt

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Calcium binding site 10 out of 16 in the CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Ca502

b:0.7
occ:1.00
 O d:GLU123 2.6 0.2 1.0
O a:ALA132 2.8 0.4 1.0
C d:GLU123 3.7 0.2 1.0
O a:LEU133 4.0 0.9 1.0
C a:ALA132 4.0 0.4 1.0
C a:LEU133 4.2 0.9 1.0
N d:GLU123 4.3 0.2 1.0
CA a:LEU133 4.3 0.9 1.0
CA d:GLU123 4.6 0.2 1.0
N d:ILE124 4.7 0.4 1.0
N a:LEU133 4.7 0.9 1.0
CA d:ILE124 4.8 0.4 1.0
N a:GLY134 4.8 0.5 1.0
CB d:ASP122 5.0 0.4 1.0

Reference:

M.Wilkinson, G.Drabavicius, A.Silanskas, G.Gasiunas, V.Siksnys, D.B.Wigley. Structure of the Dna-Bound Spacer Capture Complex of A Type II Crispr-Cas System. Mol.Cell V. 75 90 2019.
ISSN: ISSN 1097-2765
PubMed: 31080012
DOI: 10.1016/J.MOLCEL.2019.04.020
Page generated: Sat Dec 12 07:28:16 2020

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