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Calcium in PDB 6qxt: CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System

Calcium Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Calcium atom in the CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System (pdb code 6qxt). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 16 binding sites of Calcium where determined in the CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System, PDB code: 6qxt:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 16 in 6qxt

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Calcium binding site 1 out of 16 in the CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:0.7
occ:1.00
 O D:ALA132 2.7 0.8 1.0
O A:GLU123 2.8 95.4 1.0
C D:ALA132 3.9 0.8 1.0
C A:GLU123 3.9 95.4 1.0
O D:LEU133 4.4 0.6 1.0
C D:LEU133 4.4 0.6 1.0
N A:GLU123 4.6 95.4 1.0
CA D:LEU133 4.7 0.6 1.0
CA A:ILE124 4.7 0.0 1.0
N A:ILE124 4.7 0.0 1.0
N D:LEU133 4.8 0.6 1.0
CA D:ALA132 4.8 0.8 1.0
CA A:GLU123 4.9 95.4 1.0
N D:GLY134 4.9 0.8 1.0
CB A:ASP122 4.9 0.2 1.0

Calcium binding site 2 out of 16 in 6qxt

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Calcium binding site 2 out of 16 in the CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca502

b:0.7
occ:1.00
 O D:GLU123 2.6 0.0 1.0
O A:ALA132 2.8 0.9 1.0
C D:GLU123 3.7 0.0 1.0
O A:LEU133 4.0 0.0 1.0
C A:ALA132 4.0 0.9 1.0
C A:LEU133 4.2 0.0 1.0
N D:GLU123 4.3 0.0 1.0
CA A:LEU133 4.3 0.0 1.0
CA D:GLU123 4.6 0.0 1.0
N D:ILE124 4.7 0.8 1.0
N A:LEU133 4.7 0.0 1.0
CA D:ILE124 4.8 0.8 1.0
N A:GLY134 4.8 0.3 1.0
CB D:ASP122 5.0 0.9 1.0

Calcium binding site 3 out of 16 in 6qxt

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Calcium binding site 3 out of 16 in the CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca501

b:0.7
occ:1.00
 O B:GLU123 2.6 0.1 1.0
O C:ALA132 2.8 1.0 1.0
C B:GLU123 3.7 0.1 1.0
C C:ALA132 4.0 1.0 1.0
O C:LEU133 4.1 0.0 1.0
C C:LEU133 4.2 0.0 1.0
N B:GLU123 4.3 0.1 1.0
CA C:LEU133 4.4 0.0 1.0
CA B:GLU123 4.6 0.1 1.0
N B:ILE124 4.7 0.6 1.0
N C:LEU133 4.7 0.0 1.0
CA B:ILE124 4.8 0.6 1.0
N C:GLY134 4.8 0.3 1.0
CB B:ASP122 5.0 0.7 1.0

Calcium binding site 4 out of 16 in 6qxt

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Calcium binding site 4 out of 16 in the CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca502

b:0.7
occ:1.00
 O B:ALA132 2.7 0.9 1.0
O C:GLU123 2.8 0.3 1.0
C B:ALA132 3.9 0.9 1.0
C C:GLU123 3.9 0.3 1.0
O B:LEU133 4.4 0.6 1.0
C B:LEU133 4.5 0.6 1.0
N C:GLU123 4.6 0.3 1.0
CA C:ILE124 4.7 0.5 1.0
CA B:LEU133 4.7 0.6 1.0
N C:ILE124 4.7 0.5 1.0
N B:LEU133 4.8 0.6 1.0
CA B:ALA132 4.8 0.9 1.0
CA C:GLU123 4.9 0.3 1.0
CB C:ASP122 4.9 1.0 1.0
N B:GLY134 4.9 0.5 1.0

Calcium binding site 5 out of 16 in 6qxt

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Calcium binding site 5 out of 16 in the CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca501

b:0.7
occ:1.00
 O H:ALA132 2.6 0.2 1.0
O E:GLU123 2.8 0.2 1.0
C H:ALA132 3.8 0.2 1.0
C E:GLU123 3.9 0.2 1.0
O H:LEU133 4.4 0.5 1.0
C H:LEU133 4.5 0.5 1.0
N E:GLU123 4.6 0.2 1.0
CA H:LEU133 4.6 0.5 1.0
CA E:ILE124 4.7 0.8 1.0
N H:LEU133 4.7 0.5 1.0
N E:ILE124 4.7 0.8 1.0
CA H:ALA132 4.8 0.2 1.0
CA E:GLU123 4.9 0.2 1.0
CB E:ASP122 4.9 0.6 1.0
N H:GLY134 5.0 0.2 1.0

Calcium binding site 6 out of 16 in 6qxt

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Calcium binding site 6 out of 16 in the CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca502

b:0.7
occ:1.00
 O H:GLU123 2.6 0.6 1.0
O E:ALA132 2.8 0.7 1.0
C H:GLU123 3.7 0.6 1.0
C E:ALA132 4.0 0.7 1.0
O E:LEU133 4.1 0.2 1.0
C E:LEU133 4.2 0.2 1.0
N H:GLU123 4.3 0.6 1.0
CA E:LEU133 4.4 0.2 1.0
CA H:GLU123 4.6 0.6 1.0
N H:ILE124 4.7 0.1 1.0
N E:LEU133 4.7 0.2 1.0
CA H:ILE124 4.8 0.1 1.0
N E:GLY134 4.8 0.4 1.0
CB H:ASP122 5.0 0.8 1.0

Calcium binding site 7 out of 16 in 6qxt

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Calcium binding site 7 out of 16 in the CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca501

b:0.7
occ:1.00
 O F:GLU123 2.6 0.9 1.0
O G:ALA132 2.8 0.6 1.0
C F:GLU123 3.7 0.9 1.0
C G:ALA132 4.0 0.6 1.0
O G:LEU133 4.2 0.9 1.0
C G:LEU133 4.3 0.9 1.0
N F:GLU123 4.3 0.9 1.0
CA G:LEU133 4.5 0.9 1.0
CA F:GLU123 4.6 0.9 1.0
N F:ILE124 4.7 0.3 1.0
N G:LEU133 4.7 0.9 1.0
CA F:ILE124 4.8 0.3 1.0
N G:GLY134 4.8 1.0 1.0
CB F:ASP122 5.0 0.1 1.0

Calcium binding site 8 out of 16 in 6qxt

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Calcium binding site 8 out of 16 in the CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca502

b:0.7
occ:1.00
 O F:ALA132 2.6 0.1 1.0
O G:GLU123 2.8 0.1 1.0
C F:ALA132 3.9 0.1 1.0
C G:GLU123 3.9 0.1 1.0
O F:LEU133 4.5 0.4 1.0
C F:LEU133 4.5 0.4 1.0
N G:GLU123 4.6 0.1 1.0
CA G:ILE124 4.7 0.9 1.0
CA F:LEU133 4.7 0.4 1.0
N G:ILE124 4.7 0.9 1.0
N F:LEU133 4.7 0.4 1.0
CA F:ALA132 4.8 0.1 1.0
CA G:GLU123 4.9 0.1 1.0
CB G:ASP122 4.9 0.8 1.0

Calcium binding site 9 out of 16 in 6qxt

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Calcium binding site 9 out of 16 in the CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Ca501

b:0.7
occ:1.00
 O d:ALA132 2.7 0.7 1.0
O a:GLU123 2.8 45.5 1.0
C d:ALA132 3.9 0.7 1.0
C a:GLU123 3.9 45.5 1.0
O d:LEU133 4.4 0.2 1.0
C d:LEU133 4.4 0.2 1.0
N a:GLU123 4.6 45.5 1.0
CA d:LEU133 4.7 0.2 1.0
CA a:ILE124 4.7 76.7 1.0
N a:ILE124 4.7 76.7 1.0
N d:LEU133 4.8 0.2 1.0
CA d:ALA132 4.8 0.7 1.0
CA a:GLU123 4.9 45.5 1.0
N d:GLY134 4.9 0.2 1.0
CB a:ASP122 4.9 70.9 1.0

Calcium binding site 10 out of 16 in 6qxt

Go back to Calcium Binding Sites List in 6qxt
Calcium binding site 10 out of 16 in the CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of CAS1-CAS2-CSN2-Dna Dimer Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Ca502

b:0.7
occ:1.00
 O d:GLU123 2.6 0.2 1.0
O a:ALA132 2.8 0.4 1.0
C d:GLU123 3.7 0.2 1.0
O a:LEU133 4.0 0.9 1.0
C a:ALA132 4.0 0.4 1.0
C a:LEU133 4.2 0.9 1.0
N d:GLU123 4.3 0.2 1.0
CA a:LEU133 4.3 0.9 1.0
CA d:GLU123 4.6 0.2 1.0
N d:ILE124 4.7 0.4 1.0
N a:LEU133 4.7 0.9 1.0
CA d:ILE124 4.8 0.4 1.0
N a:GLY134 4.8 0.5 1.0
CB d:ASP122 5.0 0.4 1.0

Reference:

M.Wilkinson, G.Drabavicius, A.Silanskas, G.Gasiunas, V.Siksnys, D.B.Wigley. Structure of the Dna-Bound Spacer Capture Complex of A Type II Crispr-Cas System. Mol.Cell V. 75 90 2019.
ISSN: ISSN 1097-2765
PubMed: 31080012
DOI: 10.1016/J.MOLCEL.2019.04.020
Page generated: Tue Jul 16 14:06:22 2024

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