Calcium in PDB 6qy3: Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Calcium atom in the Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System
(pdb code 6qy3). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 16 binding sites of Calcium where determined in the
Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System, PDB code: 6qy3:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 16 in 6qy3
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Calcium Binding Sites List in 6qy3
Calcium binding site 1 out
of 16 in the Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca501
b:1.0
occ:1.01
|
O
|
D:ALA132
|
2.7
|
1.0
|
1.0
|
O
|
A:GLU123
|
2.8
|
1.0
|
1.0
|
C
|
D:ALA132
|
3.9
|
1.0
|
1.0
|
C
|
A:GLU123
|
3.9
|
1.0
|
1.0
|
O
|
D:LEU133
|
4.4
|
1.0
|
1.0
|
C
|
D:LEU133
|
4.4
|
1.0
|
1.0
|
N
|
A:GLU123
|
4.6
|
1.0
|
1.0
|
CA
|
D:LEU133
|
4.7
|
1.0
|
1.0
|
CA
|
A:ILE124
|
4.7
|
1.0
|
1.0
|
N
|
A:ILE124
|
4.7
|
1.0
|
1.0
|
N
|
D:LEU133
|
4.8
|
1.0
|
1.0
|
CA
|
D:ALA132
|
4.8
|
1.0
|
1.0
|
N
|
D:GLY134
|
4.9
|
1.0
|
1.0
|
CA
|
A:GLU123
|
4.9
|
1.0
|
1.0
|
CB
|
A:ASP122
|
4.9
|
1.0
|
1.0
|
|
Calcium binding site 2 out
of 16 in 6qy3
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Calcium Binding Sites List in 6qy3
Calcium binding site 2 out
of 16 in the Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca502
b:1.0
occ:1.01
|
O
|
D:GLU123
|
2.6
|
1.0
|
1.0
|
O
|
A:ALA132
|
2.8
|
1.0
|
1.0
|
C
|
D:GLU123
|
3.8
|
1.0
|
1.0
|
C
|
A:ALA132
|
4.0
|
1.0
|
1.0
|
O
|
A:LEU133
|
4.1
|
1.0
|
1.0
|
C
|
A:LEU133
|
4.2
|
1.0
|
1.0
|
N
|
D:GLU123
|
4.3
|
1.0
|
1.0
|
CA
|
A:LEU133
|
4.3
|
1.0
|
1.0
|
CA
|
D:GLU123
|
4.6
|
1.0
|
1.0
|
N
|
A:LEU133
|
4.7
|
1.0
|
1.0
|
N
|
D:ILE124
|
4.7
|
1.0
|
1.0
|
CA
|
D:ILE124
|
4.8
|
1.0
|
1.0
|
N
|
A:GLY134
|
4.8
|
1.0
|
1.0
|
CB
|
D:ASP122
|
5.0
|
1.0
|
1.0
|
|
Calcium binding site 3 out
of 16 in 6qy3
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Calcium Binding Sites List in 6qy3
Calcium binding site 3 out
of 16 in the Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca501
b:1.0
occ:1.01
|
O
|
B:GLU123
|
2.6
|
1.0
|
1.0
|
O
|
C:ALA132
|
2.8
|
1.0
|
1.0
|
C
|
B:GLU123
|
3.8
|
1.0
|
1.0
|
C
|
C:ALA132
|
4.0
|
1.0
|
1.0
|
O
|
C:LEU133
|
4.1
|
1.0
|
1.0
|
C
|
C:LEU133
|
4.2
|
1.0
|
1.0
|
N
|
B:GLU123
|
4.3
|
1.0
|
1.0
|
CA
|
C:LEU133
|
4.4
|
1.0
|
1.0
|
CA
|
B:GLU123
|
4.6
|
1.0
|
1.0
|
N
|
B:ILE124
|
4.7
|
1.0
|
1.0
|
N
|
C:LEU133
|
4.7
|
1.0
|
1.0
|
CA
|
B:ILE124
|
4.8
|
1.0
|
1.0
|
N
|
C:GLY134
|
4.8
|
1.0
|
1.0
|
CB
|
B:ASP122
|
5.0
|
1.0
|
1.0
|
|
Calcium binding site 4 out
of 16 in 6qy3
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Calcium Binding Sites List in 6qy3
Calcium binding site 4 out
of 16 in the Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca502
b:1.0
occ:1.01
|
O
|
B:ALA132
|
2.7
|
1.0
|
1.0
|
O
|
C:GLU123
|
2.8
|
1.0
|
1.0
|
C
|
B:ALA132
|
3.9
|
1.0
|
1.0
|
C
|
C:GLU123
|
3.9
|
1.0
|
1.0
|
O
|
B:LEU133
|
4.5
|
1.0
|
1.0
|
C
|
B:LEU133
|
4.5
|
1.0
|
1.0
|
N
|
C:GLU123
|
4.6
|
1.0
|
1.0
|
CA
|
B:LEU133
|
4.7
|
1.0
|
1.0
|
CA
|
C:ILE124
|
4.7
|
1.0
|
1.0
|
N
|
C:ILE124
|
4.7
|
1.0
|
1.0
|
N
|
B:LEU133
|
4.8
|
1.0
|
1.0
|
CA
|
B:ALA132
|
4.8
|
1.0
|
1.0
|
CA
|
C:GLU123
|
4.9
|
1.0
|
1.0
|
CB
|
C:ASP122
|
4.9
|
1.0
|
1.0
|
N
|
B:GLY134
|
4.9
|
1.0
|
1.0
|
|
Calcium binding site 5 out
of 16 in 6qy3
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Calcium Binding Sites List in 6qy3
Calcium binding site 5 out
of 16 in the Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca501
b:1.0
occ:1.01
|
O
|
H:ALA132
|
2.7
|
1.0
|
1.0
|
O
|
E:GLU123
|
2.8
|
1.0
|
1.0
|
C
|
H:ALA132
|
3.9
|
1.0
|
1.0
|
C
|
E:GLU123
|
3.9
|
1.0
|
1.0
|
O
|
H:LEU133
|
4.4
|
1.0
|
1.0
|
C
|
H:LEU133
|
4.4
|
1.0
|
1.0
|
N
|
E:GLU123
|
4.6
|
1.0
|
1.0
|
CA
|
H:LEU133
|
4.7
|
1.0
|
1.0
|
CA
|
E:ILE124
|
4.7
|
1.0
|
1.0
|
N
|
E:ILE124
|
4.7
|
1.0
|
1.0
|
N
|
H:LEU133
|
4.8
|
1.0
|
1.0
|
CA
|
H:ALA132
|
4.8
|
1.0
|
1.0
|
N
|
H:GLY134
|
4.9
|
1.0
|
1.0
|
CA
|
E:GLU123
|
4.9
|
1.0
|
1.0
|
CB
|
E:ASP122
|
4.9
|
1.0
|
1.0
|
|
Calcium binding site 6 out
of 16 in 6qy3
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Calcium Binding Sites List in 6qy3
Calcium binding site 6 out
of 16 in the Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca502
b:1.0
occ:1.01
|
O
|
H:GLU123
|
2.6
|
1.0
|
1.0
|
O
|
E:ALA132
|
2.8
|
1.0
|
1.0
|
C
|
H:GLU123
|
3.8
|
1.0
|
1.0
|
C
|
E:ALA132
|
4.0
|
1.0
|
1.0
|
O
|
E:LEU133
|
4.1
|
1.0
|
1.0
|
C
|
E:LEU133
|
4.2
|
1.0
|
1.0
|
N
|
H:GLU123
|
4.3
|
1.0
|
1.0
|
CA
|
E:LEU133
|
4.3
|
1.0
|
1.0
|
CA
|
H:GLU123
|
4.6
|
1.0
|
1.0
|
N
|
E:LEU133
|
4.7
|
1.0
|
1.0
|
N
|
H:ILE124
|
4.7
|
1.0
|
1.0
|
CA
|
H:ILE124
|
4.8
|
1.0
|
1.0
|
N
|
E:GLY134
|
4.8
|
1.0
|
1.0
|
CB
|
H:ASP122
|
5.0
|
1.0
|
1.0
|
|
Calcium binding site 7 out
of 16 in 6qy3
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Calcium Binding Sites List in 6qy3
Calcium binding site 7 out
of 16 in the Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca501
b:1.0
occ:1.01
|
O
|
F:GLU123
|
2.6
|
1.0
|
1.0
|
O
|
G:ALA132
|
2.8
|
1.0
|
1.0
|
C
|
F:GLU123
|
3.8
|
1.0
|
1.0
|
C
|
G:ALA132
|
4.0
|
1.0
|
1.0
|
O
|
G:LEU133
|
4.1
|
1.0
|
1.0
|
C
|
G:LEU133
|
4.2
|
1.0
|
1.0
|
N
|
F:GLU123
|
4.3
|
1.0
|
1.0
|
CA
|
G:LEU133
|
4.4
|
1.0
|
1.0
|
CA
|
F:GLU123
|
4.6
|
1.0
|
1.0
|
N
|
F:ILE124
|
4.7
|
1.0
|
1.0
|
N
|
G:LEU133
|
4.7
|
1.0
|
1.0
|
CA
|
F:ILE124
|
4.8
|
1.0
|
1.0
|
N
|
G:GLY134
|
4.8
|
1.0
|
1.0
|
CB
|
F:ASP122
|
5.0
|
1.0
|
1.0
|
|
Calcium binding site 8 out
of 16 in 6qy3
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Calcium Binding Sites List in 6qy3
Calcium binding site 8 out
of 16 in the Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca502
b:1.0
occ:1.01
|
O
|
F:ALA132
|
2.7
|
1.0
|
1.0
|
O
|
G:GLU123
|
2.8
|
1.0
|
1.0
|
C
|
F:ALA132
|
3.9
|
1.0
|
1.0
|
C
|
G:GLU123
|
3.9
|
1.0
|
1.0
|
O
|
F:LEU133
|
4.5
|
1.0
|
1.0
|
C
|
F:LEU133
|
4.5
|
1.0
|
1.0
|
N
|
G:GLU123
|
4.6
|
1.0
|
1.0
|
CA
|
F:LEU133
|
4.7
|
1.0
|
1.0
|
CA
|
G:ILE124
|
4.7
|
1.0
|
1.0
|
N
|
G:ILE124
|
4.7
|
1.0
|
1.0
|
N
|
F:LEU133
|
4.7
|
1.0
|
1.0
|
CA
|
F:ALA132
|
4.8
|
1.0
|
1.0
|
CA
|
G:GLU123
|
4.9
|
1.0
|
1.0
|
CB
|
G:ASP122
|
4.9
|
1.0
|
1.0
|
N
|
F:GLY134
|
4.9
|
1.0
|
1.0
|
|
Calcium binding site 9 out
of 16 in 6qy3
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Calcium Binding Sites List in 6qy3
Calcium binding site 9 out
of 16 in the Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Ca501
b:1.0
occ:1.01
|
O
|
d:ALA132
|
2.7
|
1.0
|
1.0
|
O
|
a:GLU123
|
2.8
|
1.0
|
1.0
|
C
|
d:ALA132
|
3.9
|
1.0
|
1.0
|
C
|
a:GLU123
|
3.9
|
1.0
|
1.0
|
O
|
d:LEU133
|
4.4
|
1.0
|
1.0
|
C
|
d:LEU133
|
4.4
|
1.0
|
1.0
|
N
|
a:GLU123
|
4.6
|
1.0
|
1.0
|
CA
|
d:LEU133
|
4.7
|
1.0
|
1.0
|
CA
|
a:ILE124
|
4.7
|
1.0
|
1.0
|
N
|
a:ILE124
|
4.7
|
1.0
|
1.0
|
N
|
d:LEU133
|
4.8
|
1.0
|
1.0
|
CA
|
d:ALA132
|
4.8
|
1.0
|
1.0
|
N
|
d:GLY134
|
4.9
|
1.0
|
1.0
|
CA
|
a:GLU123
|
4.9
|
1.0
|
1.0
|
CB
|
a:ASP122
|
4.9
|
1.0
|
1.0
|
|
Calcium binding site 10 out
of 16 in 6qy3
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Calcium Binding Sites List in 6qy3
Calcium binding site 10 out
of 16 in the Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Ca502
b:1.0
occ:1.01
|
O
|
d:GLU123
|
3.1
|
1.0
|
1.0
|
O
|
a:ALA132
|
3.1
|
1.0
|
1.0
|
O
|
a:LEU133
|
4.1
|
1.0
|
1.0
|
C
|
d:GLU123
|
4.2
|
1.0
|
1.0
|
C
|
a:LEU133
|
4.2
|
1.0
|
1.0
|
C
|
a:ALA132
|
4.3
|
1.0
|
1.0
|
N
|
d:GLU123
|
4.5
|
1.0
|
1.0
|
CA
|
a:LEU133
|
4.6
|
1.0
|
1.0
|
N
|
a:GLY134
|
4.7
|
1.0
|
1.0
|
CB
|
d:ASP122
|
4.8
|
1.0
|
1.0
|
CA
|
d:GLU123
|
4.9
|
1.0
|
1.0
|
N
|
a:LEU133
|
4.9
|
1.0
|
1.0
|
|
Reference:
M.Wilkinson,
G.Drabavicius,
A.Silanskas,
G.Gasiunas,
V.Siksnys,
D.B.Wigley.
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ISSN: ISSN 1097-2765
PubMed: 31080012
DOI: 10.1016/J.MOLCEL.2019.04.020
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