Atomistry » Calcium » PDB 6qph-6r3m » 6qy3
Atomistry »
  Calcium »
    PDB 6qph-6r3m »
      6qy3 »

Calcium in PDB 6qy3: Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System

Calcium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Calcium atom in the Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System (pdb code 6qy3). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 16 binding sites of Calcium where determined in the Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System, PDB code: 6qy3:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 16 in 6qy3

Go back to Calcium Binding Sites List in 6qy3
Calcium binding site 1 out of 16 in the Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:1.0
occ:1.01
 O D:ALA132 2.7 1.0 1.0
O A:GLU123 2.8 1.0 1.0
C D:ALA132 3.9 1.0 1.0
C A:GLU123 3.9 1.0 1.0
O D:LEU133 4.4 1.0 1.0
C D:LEU133 4.4 1.0 1.0
N A:GLU123 4.6 1.0 1.0
CA D:LEU133 4.7 1.0 1.0
CA A:ILE124 4.7 1.0 1.0
N A:ILE124 4.7 1.0 1.0
N D:LEU133 4.8 1.0 1.0
CA D:ALA132 4.8 1.0 1.0
N D:GLY134 4.9 1.0 1.0
CA A:GLU123 4.9 1.0 1.0
CB A:ASP122 4.9 1.0 1.0

Calcium binding site 2 out of 16 in 6qy3

Go back to Calcium Binding Sites List in 6qy3
Calcium binding site 2 out of 16 in the Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca502

b:1.0
occ:1.01
 O D:GLU123 2.6 1.0 1.0
O A:ALA132 2.8 1.0 1.0
C D:GLU123 3.8 1.0 1.0
C A:ALA132 4.0 1.0 1.0
O A:LEU133 4.1 1.0 1.0
C A:LEU133 4.2 1.0 1.0
N D:GLU123 4.3 1.0 1.0
CA A:LEU133 4.3 1.0 1.0
CA D:GLU123 4.6 1.0 1.0
N A:LEU133 4.7 1.0 1.0
N D:ILE124 4.7 1.0 1.0
CA D:ILE124 4.8 1.0 1.0
N A:GLY134 4.8 1.0 1.0
CB D:ASP122 5.0 1.0 1.0

Calcium binding site 3 out of 16 in 6qy3

Go back to Calcium Binding Sites List in 6qy3
Calcium binding site 3 out of 16 in the Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca501

b:1.0
occ:1.01
 O B:GLU123 2.6 1.0 1.0
O C:ALA132 2.8 1.0 1.0
C B:GLU123 3.8 1.0 1.0
C C:ALA132 4.0 1.0 1.0
O C:LEU133 4.1 1.0 1.0
C C:LEU133 4.2 1.0 1.0
N B:GLU123 4.3 1.0 1.0
CA C:LEU133 4.4 1.0 1.0
CA B:GLU123 4.6 1.0 1.0
N B:ILE124 4.7 1.0 1.0
N C:LEU133 4.7 1.0 1.0
CA B:ILE124 4.8 1.0 1.0
N C:GLY134 4.8 1.0 1.0
CB B:ASP122 5.0 1.0 1.0

Calcium binding site 4 out of 16 in 6qy3

Go back to Calcium Binding Sites List in 6qy3
Calcium binding site 4 out of 16 in the Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca502

b:1.0
occ:1.01
 O B:ALA132 2.7 1.0 1.0
O C:GLU123 2.8 1.0 1.0
C B:ALA132 3.9 1.0 1.0
C C:GLU123 3.9 1.0 1.0
O B:LEU133 4.5 1.0 1.0
C B:LEU133 4.5 1.0 1.0
N C:GLU123 4.6 1.0 1.0
CA B:LEU133 4.7 1.0 1.0
CA C:ILE124 4.7 1.0 1.0
N C:ILE124 4.7 1.0 1.0
N B:LEU133 4.8 1.0 1.0
CA B:ALA132 4.8 1.0 1.0
CA C:GLU123 4.9 1.0 1.0
CB C:ASP122 4.9 1.0 1.0
N B:GLY134 4.9 1.0 1.0

Calcium binding site 5 out of 16 in 6qy3

Go back to Calcium Binding Sites List in 6qy3
Calcium binding site 5 out of 16 in the Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca501

b:1.0
occ:1.01
 O H:ALA132 2.7 1.0 1.0
O E:GLU123 2.8 1.0 1.0
C H:ALA132 3.9 1.0 1.0
C E:GLU123 3.9 1.0 1.0
O H:LEU133 4.4 1.0 1.0
C H:LEU133 4.4 1.0 1.0
N E:GLU123 4.6 1.0 1.0
CA H:LEU133 4.7 1.0 1.0
CA E:ILE124 4.7 1.0 1.0
N E:ILE124 4.7 1.0 1.0
N H:LEU133 4.8 1.0 1.0
CA H:ALA132 4.8 1.0 1.0
N H:GLY134 4.9 1.0 1.0
CA E:GLU123 4.9 1.0 1.0
CB E:ASP122 4.9 1.0 1.0

Calcium binding site 6 out of 16 in 6qy3

Go back to Calcium Binding Sites List in 6qy3
Calcium binding site 6 out of 16 in the Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca502

b:1.0
occ:1.01
 O H:GLU123 2.6 1.0 1.0
O E:ALA132 2.8 1.0 1.0
C H:GLU123 3.8 1.0 1.0
C E:ALA132 4.0 1.0 1.0
O E:LEU133 4.1 1.0 1.0
C E:LEU133 4.2 1.0 1.0
N H:GLU123 4.3 1.0 1.0
CA E:LEU133 4.3 1.0 1.0
CA H:GLU123 4.6 1.0 1.0
N E:LEU133 4.7 1.0 1.0
N H:ILE124 4.7 1.0 1.0
CA H:ILE124 4.8 1.0 1.0
N E:GLY134 4.8 1.0 1.0
CB H:ASP122 5.0 1.0 1.0

Calcium binding site 7 out of 16 in 6qy3

Go back to Calcium Binding Sites List in 6qy3
Calcium binding site 7 out of 16 in the Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca501

b:1.0
occ:1.01
 O F:GLU123 2.6 1.0 1.0
O G:ALA132 2.8 1.0 1.0
C F:GLU123 3.8 1.0 1.0
C G:ALA132 4.0 1.0 1.0
O G:LEU133 4.1 1.0 1.0
C G:LEU133 4.2 1.0 1.0
N F:GLU123 4.3 1.0 1.0
CA G:LEU133 4.4 1.0 1.0
CA F:GLU123 4.6 1.0 1.0
N F:ILE124 4.7 1.0 1.0
N G:LEU133 4.7 1.0 1.0
CA F:ILE124 4.8 1.0 1.0
N G:GLY134 4.8 1.0 1.0
CB F:ASP122 5.0 1.0 1.0

Calcium binding site 8 out of 16 in 6qy3

Go back to Calcium Binding Sites List in 6qy3
Calcium binding site 8 out of 16 in the Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca502

b:1.0
occ:1.01
 O F:ALA132 2.7 1.0 1.0
O G:GLU123 2.8 1.0 1.0
C F:ALA132 3.9 1.0 1.0
C G:GLU123 3.9 1.0 1.0
O F:LEU133 4.5 1.0 1.0
C F:LEU133 4.5 1.0 1.0
N G:GLU123 4.6 1.0 1.0
CA F:LEU133 4.7 1.0 1.0
CA G:ILE124 4.7 1.0 1.0
N G:ILE124 4.7 1.0 1.0
N F:LEU133 4.7 1.0 1.0
CA F:ALA132 4.8 1.0 1.0
CA G:GLU123 4.9 1.0 1.0
CB G:ASP122 4.9 1.0 1.0
N F:GLY134 4.9 1.0 1.0

Calcium binding site 9 out of 16 in 6qy3

Go back to Calcium Binding Sites List in 6qy3
Calcium binding site 9 out of 16 in the Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Ca501

b:1.0
occ:1.01
 O d:ALA132 2.7 1.0 1.0
O a:GLU123 2.8 1.0 1.0
C d:ALA132 3.9 1.0 1.0
C a:GLU123 3.9 1.0 1.0
O d:LEU133 4.4 1.0 1.0
C d:LEU133 4.4 1.0 1.0
N a:GLU123 4.6 1.0 1.0
CA d:LEU133 4.7 1.0 1.0
CA a:ILE124 4.7 1.0 1.0
N a:ILE124 4.7 1.0 1.0
N d:LEU133 4.8 1.0 1.0
CA d:ALA132 4.8 1.0 1.0
N d:GLY134 4.9 1.0 1.0
CA a:GLU123 4.9 1.0 1.0
CB a:ASP122 4.9 1.0 1.0

Calcium binding site 10 out of 16 in 6qy3

Go back to Calcium Binding Sites List in 6qy3
Calcium binding site 10 out of 16 in the Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Segment of the CAS1-CAS2-CSN2-Dna Filament Complex From the Type II-A Crispr-Cas System within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Ca502

b:1.0
occ:1.01
 O d:GLU123 3.1 1.0 1.0
O a:ALA132 3.1 1.0 1.0
O a:LEU133 4.1 1.0 1.0
C d:GLU123 4.2 1.0 1.0
C a:LEU133 4.2 1.0 1.0
C a:ALA132 4.3 1.0 1.0
N d:GLU123 4.5 1.0 1.0
CA a:LEU133 4.6 1.0 1.0
N a:GLY134 4.7 1.0 1.0
CB d:ASP122 4.8 1.0 1.0
CA d:GLU123 4.9 1.0 1.0
N a:LEU133 4.9 1.0 1.0

Reference:

M.Wilkinson, G.Drabavicius, A.Silanskas, G.Gasiunas, V.Siksnys, D.B.Wigley. Structure of the Dna-Bound Spacer Capture Complex of A Type II Crispr-Cas System. Mol.Cell V. 75 90 2019.
ISSN: ISSN 1097-2765
PubMed: 31080012
DOI: 10.1016/J.MOLCEL.2019.04.020
Page generated: Tue Jul 16 14:06:25 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy